pycom03g07700

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000494
Physical Location & Seq
Reverse (-)
6110136 .. 6111134
999 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07700.2

Sequence Viewer

Length: 672 bp
ATGACGGCATTGGACCTTGTAGAGAAGACCGAGGTAGATAAAGAGATGTTCCTTCGGAGAAAACTGACACTTATGGCCTTGAACTTTGCTAATGCTCCACGATCTGAAGAGCTAACAGCCGCCAAAGCAAAGCTAGTGATAGAGGATTCTGTTCTGAAGTCTTTGCACAATTCTGATAACTTAATGTTTTCGAAAGAGAGTGTCAATACTCTCCTATTGGTGTCAACGCTGGTGGTTGGTATAACGTTTGTTCAAGGCTTCACAATACCAGGTGGATACAGTAGCTCTGGAAATGATGTGGGCACCCCAATTTTTCTTACGCATAGCCTATTCAAAATTTTCTTGATATGCAATACCGTGGCGATGTGTGGCTCCATTACCGCTTCAATTGCCCTTACGTGGGCACAAACGCATGACCCTAATATAATCTATGCTGCCATGAGATTTACCTTACCGGTGCAAGGTGTGACGCTTACCATGTTGTCCTCGTCATTCCTAGCTGGTGTTGCACTGACAGAGTATCACGTTTTATGGCTTCGCATCTTTGTTTATGCCATGGGATTTTTCTTCACGGTCTTCATAGTAGGGTTCCTTGCTCCTCTCATGGATGTTCCAGTTTCCTACGTACCTGGCCCAACACGCGCCTTCTTATTCTTAGCTTTTATCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0002831 GO:0002833 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016567 GO:0019538 GO:0023051 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0032446 GO:0032870 GO:0035690 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0098827 GO:1900150 GO:1900424 GO:1900426 GO:1901564 GO:1901700 GO:1901701 GO:1902288 GO:1902290 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

224

Amino Acids

24.56

Weight (kDa)

6.41

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccII CGCG 1 cut(s) 642
AciI CCGC 2 cut(s) 120, 381
AclI AACGTT 1 cut(s) 245
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 2 cut(s) 126, 176
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 3 cut(s) 399, 400, 461
AgeI ACCGGT 1 cut(s) 454
AgsI TTSAA 4 cut(s) 82, 254, 334, 387
AjnI CCWGG 2 cut(s) 268, 628
AluBI AGCT 5 cut(s) 112, 133, 285, 500, 659
AluI AGCT 5 cut(s) 112, 133, 285, 500, 659
AoxI GGCC 2 cut(s) 75, 631
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 1 cut(s) 336
AsiGI ACCGGT 1 cut(s) 454
AspLEI GCGC 1 cut(s) 644
AspS9I GGNCC 2 cut(s) 13, 632
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 13
BaeGI GKGCMC 2 cut(s) 305, 406
BanI GGYRCC 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 32, 568
BbvI GCAGC 1 cut(s) 421
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 2 cut(s) 270, 630
BciVI GTATCC 1 cut(s) 269
BfaI CTAG 2 cut(s) 134, 497
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 2 cut(s) 120, 435
BlsI GCNGC 2 cut(s) 121, 436
Bme1390I CCNGG 2 cut(s) 270, 630
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 13, 632
BmiI GGNNCC 3 cut(s) 304, 373, 590
BmrFI CCNGG 2 cut(s) 270, 630
BmsI GCATC 1 cut(s) 549
BpiI GAAGAC 2 cut(s) 32, 568
Bpu14I TTCGAA 1 cut(s) 191
BsaAI YACGTR 2 cut(s) 399, 625
BsaJI CCNNGG 3 cut(s) 30, 357, 555
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 400, 461
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 614
BseBI CCWGG 2 cut(s) 270, 630
BseDI CCNNGG 3 cut(s) 30, 357, 555
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 3 cut(s) 399, 400, 461
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 1 cut(s) 588
BseSI GKGCMC 2 cut(s) 305, 406
BseXI GCAGC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 2 cut(s) 77, 633
BshNI GGYRCC 1 cut(s) 302
BshTI ACCGGT 1 cut(s) 454
BsiSI CCGG 1 cut(s) 455
BslI CCNNNNNNNGG 3 cut(s) 399, 400, 461
BsnI GGCC 2 cut(s) 77, 633
Bsp119I TTCGAA 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 305, 406
Bsp143I GATC 1 cut(s) 101
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 2 cut(s) 120, 381
BspANI GGCC 2 cut(s) 77, 633
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 3 cut(s) 304, 373, 590
BspQI GCTCTTC 1 cut(s) 102
BspT104I TTCGAA 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 1 cut(s) 614
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 3 cut(s) 30, 357, 555
BssMI GATC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 270, 630
Bst4CI ACNGT 3 cut(s) 281, 358, 574
Bst6I CTCTTC 1 cut(s) 102
BstBAI YACGTR 2 cut(s) 399, 625
BstBI TTCGAA 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 655
BstDSI CCRYGG 2 cut(s) 357, 555
BstF5I GGATG 1 cut(s) 613
BstFNI CGCG 1 cut(s) 642
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 1 cut(s) 104
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 4 cut(s) 125, 389, 506, 639
BstNI CCWGG 2 cut(s) 270, 630
BstSCI CCNGG 2 cut(s) 268, 628
BstSLI GKGCMC 2 cut(s) 305, 406
BstSNI TACGTA 1 cut(s) 625
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 2 cut(s) 32, 568
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 77, 633
BtgI CCRYGG 2 cut(s) 357, 555
BtgZI GCGATG 1 cut(s) 377
BtsCI GGATG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 509
CfoI GCGC 1 cut(s) 644
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 13, 632
CseI GACGC 1 cut(s) 478
CsiI ACCWGGT 1 cut(s) 268
Csp6I GTAC 1 cut(s) 626
CspAI ACCGGT 1 cut(s) 454
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 5 cut(s) 413, 439, 478, 556, 604
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 1 cut(s) 655
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco105I TACGTA 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 126, 176
EcoRII CCWGG 2 cut(s) 268, 628
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 5 cut(s) 416, 442, 481, 559, 607
FatI CATG 5 cut(s) 412, 438, 477, 555, 603
Fnu4HI GCNGC 2 cut(s) 120, 435
FokI GGATG 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 120, 435
FspBI CTAG 2 cut(s) 134, 497
GlaI GCGC 1 cut(s) 643
GluI GCNGC 2 cut(s) 120, 435
HaeIII GGCC 2 cut(s) 77, 633
HapII CCGG 1 cut(s) 455
HgaI GACGC 1 cut(s) 478
HhaI GCGC 1 cut(s) 644
Hin1II CATG 5 cut(s) 416, 442, 481, 559, 607
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 455
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 4 cut(s) 57, 106, 156, 175
Hpy188III TCNNGA 2 cut(s) 288, 343
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 62, 655
HpyCH4III ACNGT 3 cut(s) 281, 358, 574
HpyCH4IV ACGT 4 cut(s) 245, 398, 525, 624
HpyCH4V TGCA 4 cut(s) 166, 351, 460, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 389, 506, 639
HpyF3I CTNAG 1 cut(s) 655
HpySE526I ACGT 4 cut(s) 245, 398, 525, 624
Hsp92II CATG 5 cut(s) 416, 442, 481, 559, 607
HspAI GCGC 1 cut(s) 642
Kzo9I GATC 1 cut(s) 101
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 100, 377, 601
LpnPI CCDG 9 cut(s) 215, 255, 273, 282, 468, 486, 615, 627, 642
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 1 cut(s) 549
MabI ACCWGGT 1 cut(s) 268
MaeI CTAG 2 cut(s) 134, 497
MaeII ACGT 4 cut(s) 245, 398, 525, 624
MaeIII GTNAC 1 cut(s) 466
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 4 cut(s) 37, 119, 559, 568
MfeI CAATTG 1 cut(s) 387
MhlI GDGCHC 2 cut(s) 305, 406
MluCI AATT 4 cut(s) 169, 309, 336, 387
MnlI CCTC 4 cut(s) 25, 136, 496, 609
MseI TTAA 1 cut(s) 182
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 270, 630
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 2 cut(s) 270, 630
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 4 cut(s) 125, 389, 506, 639
NcoI CCATGG 1 cut(s) 555
NdeII GATC 1 cut(s) 101
NlaIII CATG 5 cut(s) 416, 442, 481, 559, 607
NlaIV GGNNCC 3 cut(s) 304, 373, 590
NmuCI GTSAC 1 cut(s) 466
NspV TTCGAA 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 454
PkrI GCNGC 2 cut(s) 121, 436
Ppu21I YACGTR 2 cut(s) 399, 625
Psp1406I AACGTT 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 268, 628
PspGI CCWGG 2 cut(s) 268, 628
PspN4I GGNNCC 3 cut(s) 304, 373, 590
PspPI GGNCC 2 cut(s) 13, 632
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 2 cut(s) 120, 435
Sau3AI GATC 1 cut(s) 101
Sau96I GGNCC 2 cut(s) 13, 632
ScrFI CCNGG 2 cut(s) 270, 630
SduI GDGCHC 2 cut(s) 305, 406
SexAI ACCWGGT 1 cut(s) 268
SfaNI GCATC 1 cut(s) 549
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 13
SnaBI TACGTA 1 cut(s) 625
Sse9I AATT 4 cut(s) 169, 309, 336, 387
SsiI CCGC 2 cut(s) 120, 381
SspMI CTAG 2 cut(s) 134, 497
StyD4I CCNGG 2 cut(s) 268, 628
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 3 cut(s) 281, 358, 574
TaiI ACGT 4 cut(s) 248, 401, 528, 627
TaqI TCGA 1 cut(s) 191
TaqII GACCGA 1 cut(s) 44
TasI AATT 4 cut(s) 169, 309, 336, 387
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 1 cut(s) 568
TspRI CASTG 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 336
XspI CTAG 2 cut(s) 134, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.