RLG00000034025

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000494
Physical Location & Seq
Forward (+)
35515847 .. 35517377
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034025

Sequence Viewer

Length: 600 bp
ATGGCGGCTTGTAACAGAATAGACTTGCAGATCGGGAAGGACTGGTATGCTAGTGAGGGAAGGCAAACTGACTTTATCACAGCTATTCAGAAGGTTGCAAATTGTGATCAAAATGCTTCGATTCAGCTCCTGTCGCGACTGAGCCCGCTGAATAACTCATTTCTTCACACAGCAGTGACTTTCGGGCATGTAAGTCTAGCCATCAAGATCATGAAGCTTCACCCGCCACTTTTGTTGGTTAAAAACTTTGAAGGTGACACTGCACTCCACGTTGCCGCCAAAACCGGAGGGGGTGATGATAATATGATAAGGTGCATTATGGAGCATTTGAATCTGGATTCCGGTGAACGTCAAGCAACGGACATTGAAAAGGTTGATATATCAGTGTTCAGAATGAAAAATAATGAGGAAAATACTCCCTTGCATGAGGCCCTGATAAATGGTAATCACTTGGGAGGCAAAAAAGCCATATTCAGTAAGGATTTAGCGATTTATCTTACCATGGCAAATGCTCTAATAAATGGCACTACTGCAGTTAAAAATAACACAGGTGATCAAGGTAATGGCGTGCCGCCCAAAAACTTGTTGATGGAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

200

Amino Acids

21.66

Weight (kDa)

6.37

Isoelectric Point (pI)

20.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 55 - 149 5e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 136
AciI CCGC 5 cut(s) 5, 146, 224, 276, 572
AgsI TTSAA 3 cut(s) 251, 331, 368
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 3 cut(s) 83, 127, 217
AluI AGCT 3 cut(s) 83, 127, 217
AlwNI CAGNNNCTG 1 cut(s) 130
AoxI GGCC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 5 cut(s) 212, 266, 305, 356, 563
BanII GRGCYC 1 cut(s) 146
BccI CCATC 2 cut(s) 209, 583
BclI TGATCA 2 cut(s) 106, 553
BfaI CTAG 3 cut(s) 51, 197, 598
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 3 cut(s) 6, 276, 572
BlsI GCNGC 3 cut(s) 7, 277, 573
BmgT120I GGNCC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 501
BsaWI WCCGGW 2 cut(s) 284, 341
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 501
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 431
BsiSI CCGG 2 cut(s) 285, 342
BsnI GGCC 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 4 cut(s) 30, 106, 207, 553
Bsp19I CCATGG 1 cut(s) 501
Bsp68I TCGCGA 1 cut(s) 136
BspACI CCGC 5 cut(s) 5, 146, 224, 276, 572
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 535
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 4 cut(s) 30, 106, 207, 553
BssT1I CCWWGG 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 146, 569
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 501
BstFNI CGCG 1 cut(s) 136
BstKTI GATC 4 cut(s) 33, 109, 210, 556
BstMBI GATC 4 cut(s) 30, 106, 207, 553
BstMWI GCNNNNNNNGC 2 cut(s) 133, 223
BstNSI RCATGY 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 1 cut(s) 136
BsuRI GGCC 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 501
BtsI GCAGTG 2 cut(s) 180, 258
BtsIMutI CAGTG 3 cut(s) 180, 258, 390
BtuMI TCGCGA 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 146, 569
CaiI CAGNNNCTG 1 cut(s) 130
CciI TCATGA 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 430
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 4 cut(s) 188, 211, 425, 502
CviJI RGCY 9 cut(s) 8, 83, 127, 144, 200, 217, 431, 467, 597
CviKI_1 RGCY 9 cut(s) 8, 83, 127, 144, 200, 217, 431, 467, 597
DdeI CTNAG 1 cut(s) 140
DpnI GATC 4 cut(s) 32, 108, 209, 555
DpnII GATC 4 cut(s) 30, 106, 207, 553
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 4 cut(s) 191, 214, 428, 505
FaiI YATR 9 cut(s) 48, 189, 212, 305, 320, 380, 426, 470, 503
FatI CATG 4 cut(s) 187, 210, 424, 501
FauI CCCGC 2 cut(s) 153, 231
FbaI TGATCA 2 cut(s) 106, 553
Fnu4HI GCNGC 3 cut(s) 6, 276, 572
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 3 cut(s) 6, 276, 572
FspBI CTAG 3 cut(s) 51, 197, 598
GluI GCNGC 3 cut(s) 6, 276, 572
HaeIII GGCC 1 cut(s) 431
HapII CCGG 2 cut(s) 285, 342
Hin1II CATG 4 cut(s) 191, 214, 428, 505
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 3 cut(s) 121, 331, 338
HpaII CCGG 2 cut(s) 285, 342
HphI GGTGA 5 cut(s) 212, 266, 305, 356, 563
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 2 cut(s) 90, 392
Hpy188III TCNNGA 5 cut(s) 34, 135, 205, 211, 335
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 4 cut(s) 31, 54, 85, 245
HpyCH4IV ACGT 2 cut(s) 270, 349
HpyCH4V TGCA 6 cut(s) 28, 98, 263, 315, 424, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 223
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 270, 349
Hsp92II CATG 4 cut(s) 191, 214, 428, 505
Ksp22I TGATCA 2 cut(s) 106, 553
Kzo9I GATC 4 cut(s) 30, 106, 207, 553
LmnI GCTCC 2 cut(s) 132, 322
LpnPI CCDG 7 cut(s) 28, 143, 298, 320, 355, 446, 534
MaeI CTAG 3 cut(s) 51, 197, 598
MaeII ACGT 2 cut(s) 270, 349
MaeIII GTNAC 3 cut(s) 11, 175, 254
MalI GATC 4 cut(s) 32, 108, 209, 555
MboI GATC 4 cut(s) 30, 106, 207, 553
MboII GAAGA 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 1 cut(s) 100
MnlI CCTC 6 cut(s) 49, 281, 400, 421, 449, 586
MseI TTAA 2 cut(s) 240, 537
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 2 cut(s) 285, 342
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 2 cut(s) 133, 223
NcoI CCATGG 1 cut(s) 501
NdeII GATC 4 cut(s) 30, 106, 207, 553
NlaIII CATG 4 cut(s) 191, 214, 428, 505
NmuCI GTSAC 2 cut(s) 175, 254
NruI TCGCGA 1 cut(s) 136
NspI RCATGY 1 cut(s) 191
OliI CACNNNNGTG 1 cut(s) 173
PagI TCATGA 1 cut(s) 210
PfeI GAWTC 3 cut(s) 121, 331, 338
PkrI GCNGC 3 cut(s) 7, 277, 573
PspPI GGNCC 1 cut(s) 430
PstI CTGCAG 1 cut(s) 535
PstNI CAGNNNCTG 1 cut(s) 130
RruI TCGCGA 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 2 cut(s) 240, 537
SatI GCNGC 3 cut(s) 6, 276, 572
Sau3AI GATC 4 cut(s) 30, 106, 207, 553
Sau96I GGNCC 1 cut(s) 430
SduI GDGCHC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 1 cut(s) 100
SsiI CCGC 5 cut(s) 5, 146, 224, 276, 572
SspMI CTAG 3 cut(s) 51, 197, 598
StyI CCWWGG 1 cut(s) 501
TaiI ACGT 2 cut(s) 273, 352
TaqI TCGA 1 cut(s) 119
TasI AATT 1 cut(s) 100
TauI GCSGC 3 cut(s) 8, 278, 574
TfiI GAWTC 3 cut(s) 121, 331, 338
Tru1I TTAA 2 cut(s) 240, 537
Tru9I TTAA 2 cut(s) 240, 537
TscAI CASTG 3 cut(s) 180, 265, 390
TseFI GTSAC 2 cut(s) 175, 254
Tsp45I GTSAC 2 cut(s) 175, 254
TspDTI ATGAA 2 cut(s) 227, 410
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 3 cut(s) 180, 265, 390
XceI RCATGY 1 cut(s) 191
XspI CTAG 3 cut(s) 51, 197, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.