RchiOBHm_Chr3g0461161

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000494
Physical Location & Seq
Forward (+)
9230324 .. 9231549
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42760

Sequence Viewer

Length: 1086 bp
ATGCCTCCTCTTGCACTTGCAGCATATATAGGTAACTTTGATGCCGTACGCTGCTTGTTAGACAAATGCAGTAACGATGCATACAGGCAGGACACAAATGGATTCTTTCCGATACACATAGCGTCCCGAAACGGCAACATCAAGATAGTTCAAGAATTCCTCAATCATTGCCCAGACTTGAAGGAGTTACATGACAAGCAAGGCCGGAACATTCTTCATGTGGCAGCTGCGTATGGACGAGCTAAGCTGGTTGAATATATGCTTGGAACGACCAAGCTTGAAATGCTTCTCAACGAAAGAGATAATTTCGGAAACACCCCTCTACACGTAGCTGTTCAGAACTGGCATCCTAGGATTGTCAAAATTCTGACCCGGGATAAGAGAGTTCACCAAAAGATTCTCAACAATAAGGGCATGACAGCATTTGATATTGCAGAGAAGTCCGAGAAACTAACTTTGATGGCCTTGAGATTAGCTAATGCTCCCCGATCTGAGATACAAAGAGTTGCAAAAGAAAGTGGAGCAAATGATTATGGTGAGAAGACCAAGAATAATCCTGATTATCTACTATTCTCAAGAGAAAATATGAATACTCTCCTTATAGTGTCGACACTGGTGGCTGCTATAACTTTTGCTGCTGGCTTCACTGTGCCGGGAGGATATAAGAACTCTGGAACTGACGAAGGCATGGCAACCTTGCGTAATACAGCTCTATTCCAAATATTCCTGATATGCAACACCATTTCAATGTACAGCTCTATTACCGTTGCGATTGCGCTTATCTGGGCACAGGCAGGTGATCTTAAAATGATTTGTGTTGCTGTGAGGACTATACTACCCATGTTAGGCCTAGCTCTTATAATGATGTCCGTGGCATTCCTAGCTGGTGTTGATCTCGTAGCGAATAACCTTACTTGCGGCTACGTTGTCGTGGCCCTGGGCTCGTTTTTCATCGTCCAAGTAGTTGTGTTCATTCTTCCGCTCACAATCCCACTTTCCTCCAAGAATTGCATTACACACTTCATTTTACGTGGTAACCTTCGTTTGCTGATGATGGTAACTAGATATGAGGTTGAGAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0002831 GO:0002833 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016567 GO:0019538 GO:0023051 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0032446 GO:0032870 GO:0035690 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0098827 GO:1900150 GO:1900424 GO:1900426 GO:1901564 GO:1901700 GO:1901701 GO:1902288 GO:1902290 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

361

Amino Acids

39.97

Weight (kDa)

9.1

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 4 - 88 1.1e-14 Ankyrin repeats (3 copies)
Ank_4 PF13637 72 - 123 2.2e-06 Ankyrin repeats (many copies)
Ank_5 PF13857 95 - 145 2.2e-06 Ankyrin repeats (many copies)
PGG PF13962 194 - 297 7.8e-27 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 860
AarI CACCTGC 1 cut(s) 785
Acc36I ACCTGC 1 cut(s) 785
AccBSI CCGCTC 1 cut(s) 982
AccI GTMKAC 1 cut(s) 608
AciI CCGC 2 cut(s) 918, 980
AcsI RAATTY 2 cut(s) 155, 363
AfaI GTAC 2 cut(s) 48, 752
AfiI CCNNNNNNNGG 1 cut(s) 845
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 5 cut(s) 152, 181, 254, 281, 747
AjnI CCWGG 1 cut(s) 936
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 4 cut(s) 202, 462, 847, 933
ApeKI GCWGC 6 cut(s) 20, 51, 224, 227, 620, 635
ApoI RAATTY 2 cut(s) 155, 363
Asp700I GAANNNNTTC 1 cut(s) 285
AspA2I CCTAGG 1 cut(s) 350
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 1 cut(s) 934
AsuC2I CCSGG 3 cut(s) 373, 374, 654
AsuHPI GGTGA 3 cut(s) 380, 548, 809
AvaI CYCGRG 1 cut(s) 372
AvrII CCTAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 944
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 6 cut(s) 32, 38, 214, 236, 607, 622
BccI CCATC 2 cut(s) 454, 1048
BceAI ACGGC 2 cut(s) 29, 148
BciT130I CCWGG 1 cut(s) 938
BcnI CCSGG 3 cut(s) 373, 374, 654
BfaI CTAG 4 cut(s) 351, 851, 881, 1062
BfuAI ACCTGC 1 cut(s) 785
BisI GCNGC 7 cut(s) 21, 52, 225, 228, 621, 636, 919
BlnI CCTAGG 1 cut(s) 350
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 7 cut(s) 22, 53, 226, 229, 622, 637, 920
Bme1390I CCNGG 4 cut(s) 373, 374, 654, 938
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 934
BmrFI CCNGG 4 cut(s) 373, 374, 654, 938
BmsI GCATC 3 cut(s) 31, 67, 355
BpiI GAAGAC 1 cut(s) 548
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 2 cut(s) 487, 559
BpuMI CCSGG 3 cut(s) 373, 374, 654
BsaAI YACGTR 2 cut(s) 328, 1031
BsaJI CCNNGG 5 cut(s) 350, 372, 870, 936, 937
Bsc4I CCNNNNNNNGG 1 cut(s) 845
Bse1I ACTGG 2 cut(s) 347, 618
Bse3DI GCAATG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 5 cut(s) 350, 372, 870, 936, 937
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 845
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 2 cut(s) 347, 618
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 6 cut(s) 32, 38, 214, 236, 607, 622
BshFI GGCC 4 cut(s) 204, 464, 849, 935
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 3 cut(s) 205, 373, 653
BsiWI CGTACG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 845
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 875
BsnI GGCC 4 cut(s) 204, 464, 849, 935
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 790, 944
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 3 cut(s) 488, 799, 892
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 2 cut(s) 918, 980
BspANI GGCC 4 cut(s) 204, 464, 849, 935
BspCNI CTCAG 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 982
BsrDI GCAATG 1 cut(s) 166
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 2 cut(s) 347, 618
BssECI CCNNGG 5 cut(s) 350, 372, 870, 936, 937
BssMI GATC 3 cut(s) 488, 799, 892
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 938
Bst4CI ACNGT 2 cut(s) 649, 766
BstAUI TGTACA 1 cut(s) 750
BstBAI YACGTR 2 cut(s) 328, 1031
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 2 cut(s) 243, 492
BstDSI CCRYGG 1 cut(s) 870
BstEII GGTNACC 1 cut(s) 1034
BstF5I GGATG 1 cut(s) 346
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 3 cut(s) 491, 802, 895
BstMBI GATC 3 cut(s) 488, 799, 892
BstMWI GCNNNNNNNGC 3 cut(s) 20, 283, 881
BstNI CCWGG 1 cut(s) 938
BstPI GGTNACC 1 cut(s) 1034
BstSCI CCNGG 4 cut(s) 371, 372, 652, 936
BstSLI GKGCMC 1 cut(s) 790
BstV1I GCAGC 6 cut(s) 32, 38, 214, 236, 607, 622
BstV2I GAAGAC 1 cut(s) 548
BsuRI GGCC 4 cut(s) 204, 464, 849, 935
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 611, 645
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 1 cut(s) 640
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 934
Cfr9I CCCGGG 1 cut(s) 372
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 47, 751
CviAII CATG 5 cut(s) 191, 218, 415, 688, 841
CviQI GTAC 2 cut(s) 47, 751
DdeI CTNAG 2 cut(s) 243, 492
DpnI GATC 3 cut(s) 490, 801, 894
DpnII GATC 3 cut(s) 488, 799, 892
Eco130I CCWWGG 1 cut(s) 350
Eco147I AGGCCT 1 cut(s) 849
Eco24I GRGCYC 1 cut(s) 944
Eco88I CYCGRG 1 cut(s) 372
Eco91I GGTNACC 1 cut(s) 1034
EcoO65I GGTNACC 1 cut(s) 1034
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 944
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 5 cut(s) 194, 221, 418, 691, 844
FaqI GGGAC 1 cut(s) 109
FatI CATG 5 cut(s) 190, 217, 414, 687, 840
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 7 cut(s) 21, 52, 225, 228, 621, 636, 919
FokI GGATG 1 cut(s) 333
FriOI GRGCYC 1 cut(s) 944
Fsp4HI GCNGC 7 cut(s) 21, 52, 225, 228, 621, 636, 919
FspBI CTAG 4 cut(s) 351, 851, 881, 1062
GlaI GCGC 1 cut(s) 777
GluI GCNGC 7 cut(s) 21, 52, 225, 228, 621, 636, 919
HaeIII GGCC 4 cut(s) 204, 464, 849, 935
HapII CCGG 3 cut(s) 205, 373, 653
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 778
Hin1II CATG 5 cut(s) 194, 221, 418, 691, 844
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 2 cut(s) 102, 397
HpaII CCGG 3 cut(s) 205, 373, 653
HphI GGTGA 3 cut(s) 380, 548, 809
Hpy166II GTNNAC 2 cut(s) 388, 609
Hpy188I TCNGA 6 cut(s) 111, 311, 339, 369, 445, 493
Hpy188III TCNNGA 7 cut(s) 126, 142, 152, 557, 576, 672, 727
Hpy8I GTNNAC 2 cut(s) 388, 609
HpyAV CCTTC 3 cut(s) 175, 677, 1049
HpyCH4III ACNGT 2 cut(s) 649, 766
HpyCH4IV ACGT 3 cut(s) 327, 924, 1030
HpyCH4V TGCA 8 cut(s) 14, 20, 69, 80, 434, 509, 735, 1011
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 283, 881
HpyF3I CTNAG 2 cut(s) 243, 492
HpySE526I ACGT 3 cut(s) 327, 924, 1030
Hsp92II CATG 5 cut(s) 194, 221, 418, 691, 844
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 3 cut(s) 488, 799, 892
LmnI GCTCC 2 cut(s) 487, 521
Lsp1109I GCAGC 6 cut(s) 32, 38, 214, 236, 607, 622
LweI GCATC 3 cut(s) 31, 67, 355
MaeI CTAG 4 cut(s) 351, 851, 881, 1062
MaeII ACGT 3 cut(s) 327, 924, 1030
MaeIII GTNAC 5 cut(s) 32, 71, 186, 1034, 1057
MalI GATC 3 cut(s) 490, 801, 894
MbiI CCGCTC 1 cut(s) 982
MboI GATC 3 cut(s) 488, 799, 892
MboII GAAGA 3 cut(s) 206, 553, 968
MhlI GDGCHC 2 cut(s) 790, 944
MluCI AATT 4 cut(s) 155, 304, 363, 1006
MnlI CCTC 8 cut(s) 15, 18, 170, 330, 650, 819, 1009, 1063
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 3 cut(s) 205, 373, 653
MspR9I CCNGG 4 cut(s) 373, 374, 654, 938
Mva1269I GAATGC 1 cut(s) 875
MvaI CCWGG 1 cut(s) 938
MwoI GCNNNNNNNGC 3 cut(s) 20, 283, 881
NciI CCSGG 3 cut(s) 373, 374, 654
NdeII GATC 3 cut(s) 488, 799, 892
NlaIII CATG 5 cut(s) 194, 221, 418, 691, 844
NsiI ATGCAT 1 cut(s) 82
PaqCI CACCTGC 1 cut(s) 785
PasI CCCWGGG 1 cut(s) 937
PceI AGGCCT 1 cut(s) 849
PctI GAATGC 1 cut(s) 875
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 102, 397
Pfl23II CGTACG 1 cut(s) 46
PkrI GCNGC 7 cut(s) 22, 53, 226, 229, 622, 637, 920
Ppu21I YACGTR 2 cut(s) 328, 1031
PsiI TTATAA 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 936
PspEI GGTNACC 1 cut(s) 1034
PspGI CCWGG 1 cut(s) 936
PspLI CGTACG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 934
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 2 cut(s) 48, 752
RsaNI GTAC 2 cut(s) 47, 751
RseI CAYNNNNRTG 1 cut(s) 746
SalI GTCGAC 1 cut(s) 607
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 7 cut(s) 21, 52, 225, 228, 621, 636, 919
Sau3AI GATC 3 cut(s) 488, 799, 892
Sau96I GGNCC 1 cut(s) 934
ScrFI CCNGG 4 cut(s) 373, 374, 654, 938
SduI GDGCHC 2 cut(s) 790, 944
SfaNI GCATC 3 cut(s) 31, 67, 355
SmaI CCCGGG 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 2 cut(s) 466, 574
SmoI CTYRAG 2 cut(s) 466, 574
Sse9I AATT 4 cut(s) 155, 304, 363, 1006
SseBI AGGCCT 1 cut(s) 849
SsiI CCGC 2 cut(s) 918, 980
SspI AATATT 1 cut(s) 723
SspMI CTAG 4 cut(s) 351, 851, 881, 1062
StuI AGGCCT 1 cut(s) 849
StyD4I CCNGG 4 cut(s) 371, 372, 652, 936
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 649, 766
TaiI ACGT 3 cut(s) 330, 927, 1033
TaqI TCGA 1 cut(s) 608
TasI AATT 4 cut(s) 155, 304, 363, 1006
TatI WGTACW 1 cut(s) 750
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 2 cut(s) 102, 397
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 2 cut(s) 618, 652
TseI GCWGC 6 cut(s) 20, 51, 224, 227, 620, 635
TspDTI ATGAA 5 cut(s) 206, 602, 940, 961, 1012
TspGWI ACGGA 1 cut(s) 859
TspMI CCCGGG 1 cut(s) 372
TspRI CASTG 2 cut(s) 618, 652
XapI RAATTY 2 cut(s) 155, 363
XmaI CCCGGG 1 cut(s) 372
XmaJI CCTAGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 4 cut(s) 351, 851, 881, 1062
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.