AT4G03505

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000494
Physical Location & Seq
Reverse (-)
1556888 .. 1557319
432 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03505.1

Sequence Viewer

Length: 432 bp
ATGTCTCGTGACCAACTGAGACGAAGATCCTTCCCTATGAATCTGATAAACAACAGCTTATGCTCACTCAATTCACAAGATTCCCTTCAAGCTGGAGGAGACTCTGTGGCAGAGTTCTTTATCAATCTCAGGTTTACCGATATTTTTGACCTTCCTGGTGAATATTTTCAAATGATTCCAGAGATGTTTAGCGCACTGAGTGATGGGGACAAAGAATGGCTTGGGAAATTGAGAAGCCATGGAACACTGCTGCCTGCTGGCATGTTTCAAGAACGATCGAGGAGATTATATTCTTCGTCTTGCTGCTACATGGGGTCTGGAACGAGTGAAGAGCATTGTCTCACTCTTTCCATGTCTTCTATTGGAGCCAAACTCAAAGGCTCAGCTTACAATCCATGTGGAGGCTCGTGCGGGTCAGTCAACTATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04750 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04750
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5

Protein Analysis

143

Amino Acids

15.78

Weight (kDa)

6.08

Isoelectric Point (pI)

70.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 411
AclWI GGATC 1 cut(s) 21
AdeI CACNNNGTG 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 3 cut(s) 89, 170, 269
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 3 cut(s) 57, 92, 386
AluI AGCT 3 cut(s) 57, 92, 386
Alw26I GTCTC 4 cut(s) 9, 13, 93, 344
AlwI GGATC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 250, 303
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 170
BauI CACGAG 2 cut(s) 6, 406
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 237, 290
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 4 cut(s) 9, 13, 93, 344
BisI GCNGC 2 cut(s) 251, 304
BlpI GCTNAGC 1 cut(s) 382
BlsI GCNGC 2 cut(s) 252, 305
Bme1390I CCNGG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 357, 389
BpmI CTGGAG 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 4 cut(s) 8, 142, 188, 396
BseRI GAGGAG 2 cut(s) 111, 295
BseXI GCAGC 2 cut(s) 237, 290
Bsh1285I CGRYCG 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 4 cut(s) 9, 13, 93, 344
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 221
Bsp143I GATC 2 cut(s) 26, 275
Bsp1720I GCTNAGC 1 cut(s) 382
Bsp19I CCATGG 1 cut(s) 238
BspACI CCGC 1 cut(s) 411
BspCNI CTCAG 4 cut(s) 9, 141, 189, 395
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 26, 275
BssSI CACGAG 2 cut(s) 6, 406
BssT1I CCWWGG 1 cut(s) 238
Bst2BI CACGAG 2 cut(s) 6, 406
Bst2UI CCWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 2 cut(s) 255, 259
BstDEI CTNAG 4 cut(s) 17, 128, 197, 382
BstDSI CCRYGG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 2 cut(s) 29, 278
BstMAI GTCTC 4 cut(s) 9, 13, 93, 344
BstMBI GATC 2 cut(s) 26, 275
BstMCI CGRYCG 1 cut(s) 278
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 237, 290
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 194, 245
Cac8I GCNNGC 2 cut(s) 255, 259
CfoI GCGC 1 cut(s) 194
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 5 cut(s) 239, 262, 310, 352, 396
CviJI RGCY 8 cut(s) 57, 92, 220, 237, 368, 381, 386, 405
CviKI_1 RGCY 8 cut(s) 57, 92, 220, 237, 368, 381, 386, 405
DdeI CTNAG 4 cut(s) 17, 128, 197, 382
DpnI GATC 2 cut(s) 28, 277
DpnII GATC 2 cut(s) 26, 275
DraIII CACNNNGTG 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 5 cut(s) 242, 265, 313, 355, 399
FaiI YATR 8 cut(s) 38, 61, 240, 263, 289, 311, 353, 397
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 204, 236
FaqI GGGAC 1 cut(s) 221
FatI CATG 5 cut(s) 238, 261, 309, 351, 395
FauI CCCGC 1 cut(s) 404
Fnu4HI GCNGC 2 cut(s) 251, 304
Fsp4HI GCNGC 2 cut(s) 251, 304
GlaI GCGC 1 cut(s) 193
GluI GCNGC 2 cut(s) 251, 304
GsuI CTGGAG 1 cut(s) 114
HhaI GCGC 1 cut(s) 194
Hin1II CATG 5 cut(s) 242, 265, 313, 355, 399
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 4 cut(s) 40, 80, 101, 175
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 135, 421
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 4 cut(s) 8, 179, 269, 318
Hpy8I GTNNAC 2 cut(s) 135, 421
HpyAV CCTTC 3 cut(s) 40, 95, 161
HpyF3I CTNAG 4 cut(s) 17, 128, 197, 382
Hsp92II CATG 5 cut(s) 242, 265, 313, 355, 399
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 2 cut(s) 26, 275
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 8 cut(s) 78, 115, 141, 168, 192, 243, 267, 303
Lsp1109I GCAGC 2 cut(s) 237, 290
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 28, 277
MboI GATC 2 cut(s) 26, 275
MboII GAAGA 4 cut(s) 36, 285, 341, 348
MflI RGATCY 1 cut(s) 26
MluCI AATT 2 cut(s) 70, 227
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 3 cut(s) 89, 273, 395
MroXI GAANNNNTTC 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 238
NdeII GATC 2 cut(s) 26, 275
NlaIII CATG 5 cut(s) 242, 265, 313, 355, 399
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 8
NspI RCATGY 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 3 cut(s) 40, 80, 175
PkrI GCNGC 2 cut(s) 252, 305
Ple19I CGATCG 1 cut(s) 278
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 367
PsuI RGATCY 1 cut(s) 26
PvuI CGATCG 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 324
SatI GCNGC 2 cut(s) 251, 304
Sau3AI GATC 2 cut(s) 26, 275
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 156
SetI ASST 5 cut(s) 59, 94, 134, 153, 388
Sse9I AATT 2 cut(s) 70, 227
SsiI CCGC 1 cut(s) 411
SspI AATATT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 238
TaqI TCGA 1 cut(s) 278
TasI AATT 2 cut(s) 70, 227
TfiI GAWTC 3 cut(s) 40, 80, 175
TscAI CASTG 2 cut(s) 201, 252
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 250, 303
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 2 cut(s) 201, 252
XceI RCATGY 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.