Prupe.3G155200_v2.0.a1

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000494
Physical Location & Seq
Forward (+)
17306506 .. 17307141
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G155200.1

Sequence Viewer

Length: 636 bp
ATGGAGCTGTTAACTAATAGGGAGGTATGGGCTGTAACGAAACTACCATCACAGGAAATGGAAGCGCATCATCAAATACAGGACTCTGAGGAAACAGATGGTGATGCTGATAACTTGTGCTTGTACCAGCAGCTGTATAGCTATGCTACTCAGGGCAAAACAAATCAATTTCACGATACTATTGAAAAGAAACTTCGGGATCCCAATATCCGAGTTCAGTTTCTGTCTCGACGAAGCTCCCAGAATAACACATTCATTCACATAGCTGTGAGCTCCGGCCATGTCGAACTAGCAGCCAAGATCTTACAACAACACAAGCCCCTTTTGTTAGAGAAAAACTTTGAAAGCGACACCGCGCTTCACATTGCAGCCAAAGCTGGGGATGTAGATACGACAACAAACACTCTTCTGCGTGAAGCACGAGGAACAACAGACGTTGAAAATACTGGTGATGTATTGACATTGCTGAGGATGAAAAATAATGAGGAAAACACTGCCTTGCACGAGGCCCTGATTCGAGGTCACCAATTAGTAGCCAAGTGTTTGATAGAGGCCGATCCTGCCGTTTCACTTTACATTAATAAAGAACAAAAGTCCCCTTTGTATTTGGCCGCTGAACAAGGGCTTGTTGAGATA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

212

Amino Acids

23.86

Weight (kDa)

5.35

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 356
AciI CCGC 2 cut(s) 354, 612
AclWI GGATC 3 cut(s) 194, 207, 551
AcoI YGGCCR 2 cut(s) 277, 609
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 3 cut(s) 185, 344, 440
AluBI AGCT 7 cut(s) 7, 133, 141, 237, 266, 273, 377
AluI AGCT 7 cut(s) 7, 133, 141, 237, 266, 273, 377
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 3 cut(s) 194, 207, 551
AlwNI CAGNNNCTG 2 cut(s) 133, 223
AoxI GGCC 4 cut(s) 277, 507, 552, 609
ApeKI GCWGC 3 cut(s) 130, 293, 368
AseI ATTAAT 1 cut(s) 579
AspLEI GCGC 2 cut(s) 67, 358
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 3 cut(s) 113, 461, 515
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 275
BauI CACGAG 2 cut(s) 420, 503
Bbv12I GWGCWC 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 142, 305, 380
BccI CCATC 2 cut(s) 55, 92
BceAI ACGGC 1 cut(s) 548
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 290
BglII AGATCT 1 cut(s) 300
BisI GCNGC 4 cut(s) 131, 294, 369, 612
BlsI GCNGC 4 cut(s) 132, 295, 370, 613
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 2 cut(s) 76, 94
Bpu10I CCTNAGC 1 cut(s) 467
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 2 cut(s) 363, 461
BseGI GGATG 2 cut(s) 388, 477
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMI GCAATG 2 cut(s) 363, 461
BseMII CTCAG 3 cut(s) 78, 164, 458
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 3 cut(s) 142, 305, 380
BseYI CCCAGC 1 cut(s) 377
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 4 cut(s) 279, 509, 554, 611
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 580
BsnI GGCC 4 cut(s) 279, 509, 554, 611
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 199, 300, 556
BspACI CCGC 2 cut(s) 354, 612
BspANI GGCC 4 cut(s) 279, 509, 554, 611
BspCNI CTCAG 3 cut(s) 79, 163, 459
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 3 cut(s) 194, 207, 551
BsrDI GCAATG 2 cut(s) 363, 461
BsrI ACTGG 1 cut(s) 451
BssMI GATC 3 cut(s) 199, 300, 556
BssSI CACGAG 2 cut(s) 420, 503
Bst2BI CACGAG 2 cut(s) 420, 503
Bst6I CTCTTC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 87, 150, 467
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 2 cut(s) 388, 477
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 2 cut(s) 67, 358
BstKTI GATC 3 cut(s) 202, 303, 559
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 199, 300, 556
BstMWI GCNNNNNNNGC 2 cut(s) 374, 560
BstPI GGTNACC 1 cut(s) 521
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 3 cut(s) 142, 305, 380
BstX2I RGATCY 2 cut(s) 199, 300
BstYI RGATCY 2 cut(s) 199, 300
BsuRI GGCC 4 cut(s) 279, 509, 554, 611
BtsCI GGATG 2 cut(s) 388, 477
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
CaiI CAGNNNCTG 2 cut(s) 133, 223
CfoI GCGC 2 cut(s) 67, 358
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 281
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 3 cut(s) 87, 150, 467
DpnI GATC 3 cut(s) 201, 302, 558
DpnII GATC 3 cut(s) 199, 300, 556
EaeI YGGCCR 2 cut(s) 277, 609
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 508
EcoO65I GGTNACC 1 cut(s) 521
EcoT38I GRGCYC 1 cut(s) 275
FaeI CATG 1 cut(s) 284
FaiI YATR 5 cut(s) 28, 138, 144, 263, 282
FaqI GGGAC 1 cut(s) 580
FatI CATG 1 cut(s) 280
Fnu4HI GCNGC 4 cut(s) 131, 294, 369, 612
FokI GGATG 2 cut(s) 395, 484
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 131, 294, 369, 612
FspBI CTAG 1 cut(s) 290
GlaI GCGC 2 cut(s) 66, 357
GluI GCNGC 4 cut(s) 131, 294, 369, 612
GsaI CCCAGC 1 cut(s) 381
HaeIII GGCC 4 cut(s) 279, 509, 554, 611
HapII CCGG 1 cut(s) 276
HhaI GCGC 2 cut(s) 67, 358
Hin1II CATG 1 cut(s) 284
Hin6I GCGC 2 cut(s) 65, 356
HinP1I GCGC 2 cut(s) 65, 356
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 2 cut(s) 83, 514
HpaI GTTAAC 1 cut(s) 12
HpaII CCGG 1 cut(s) 276
HphI GGTGA 3 cut(s) 113, 461, 515
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 88, 212
Hpy188III TCNNGA 3 cut(s) 173, 197, 228
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 234
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 368, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 560
HpyF3I CTNAG 3 cut(s) 87, 150, 467
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 1 cut(s) 284
HspAI GCGC 2 cut(s) 65, 356
KspAI GTTAAC 1 cut(s) 12
Kzo9I GATC 3 cut(s) 199, 300, 556
LmnI GCTCC 3 cut(s) 4, 242, 278
Lsp1109I GCAGC 3 cut(s) 142, 305, 380
LweI GCATC 2 cut(s) 76, 94
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 34, 521
MalI GATC 3 cut(s) 201, 302, 558
MboI GATC 3 cut(s) 199, 300, 556
MboII GAAGA 1 cut(s) 398
MflI RGATCY 2 cut(s) 199, 300
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 2 cut(s) 167, 527
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 8 cut(s) 16, 82, 416, 462, 478, 499, 512, 544
MseI TTAA 2 cut(s) 11, 579
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 2 cut(s) 133, 614
MspI CCGG 1 cut(s) 276
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 374, 560
NdeII GATC 3 cut(s) 199, 300, 556
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 4 cut(s) 132, 295, 370, 613
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PshBI ATTAAT 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 275
PspEI GGTNACC 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 508
PstNI CAGNNNCTG 2 cut(s) 133, 223
PsuI RGATCY 2 cut(s) 199, 300
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 11, 579
SatI GCNGC 4 cut(s) 131, 294, 369, 612
Sau3AI GATC 3 cut(s) 199, 300, 556
Sau96I GGNCC 1 cut(s) 508
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 2 cut(s) 76, 94
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 2 cut(s) 167, 527
SsiI CCGC 2 cut(s) 354, 612
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 275
TaiI ACGT 1 cut(s) 438
TaqI TCGA 3 cut(s) 229, 285, 517
TasI AATT 2 cut(s) 167, 527
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 2 cut(s) 11, 579
Tru9I TTAA 2 cut(s) 11, 579
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 3 cut(s) 130, 293, 368
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 2 cut(s) 244, 488
TspRI CASTG 1 cut(s) 499
VspI ATTAAT 1 cut(s) 579
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.