Rroxscaffold_1G00039610

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000494
Physical Location & Seq
Reverse (-)
57244137 .. 57246406
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039610.1

Sequence Viewer

Length: 2004 bp
ATGCAACAAAATCAAATCCAGGACAGTCATCTAACCGATCACTCAAAATTGTACCATCAGTTGTACAGGTATGCTAGTGTGGGAAGGCAAACTGACTTTATCACAGCTATTCAGAACGTTGCAAATTGTGATCAAAATGCTTCGATTAAGCTCCTGTCCCGACTGAGCCCGCTGAATAACTCATTTCTTCACACAGCAGTGACTTTCGGGCATGTAAGTCTAGCCATCAAGATCATGAAGCTTCACCCGCCACTTTTGTTGGTTAAAAACTTTGAAGGTGACACTGCACTCCACGTTGCGGCCAAAACCGGAGGGGTTGATGATAACCTGATAAGGTGCATTATGGAGCATGTGAATCCGGATTCTGGTGAAGGTCAAGCGACGGACATTGAAAAGGTTGATATATCAGTGTTCAGAATGAAAAATGATGAGGAAAATACTCCCTTGCATGAGGCCCTGATAAATGGTAATCAATTGGAGGCAAAGTATTTGATCAAGGCTGATCCTTCAGTTTCATTTTGTGCTAACAAGGAGAGAAAGTCCCCTTTGTATCTAGCTGCAGAAGCTGGGCTCGTTGAAATTGTGAAGCTAATAAATGACACTACTGCAGTTCAGAATAACACAGGTGATCAAGGTAATGGCGTGCCGCCTGTGAACTTGGTGGTGGAGGGCAAGTCCCCGTTGCATGCTGCGATTCTCAGCCAGAAGGAAGATGTCCTAGGCATAATATCAAGAATGCGATTTACCGTAGAGCATTTAGAAGACGAGAAAGGGAGGACTCCACTTCATTGTGCAGCATCAACAGGTTATCTCGAAGGGCTTCGCTTCCTATTAAAAAGATGTTTATCCGATTCTCATCGAGCAGATAGTGGTGGCACCTTTCCAATCCATTCTGCATCAAGCAAAGGTCATGTTCCTATAGTTAAGCTGCTTCTTGAACATTATCCCGATTTAAAGGAATTGAGGAACTCGAGTGGAGATAACATTCTTCATGTTGCAGCAAAGTGTGGCAGGGACAATCTTGTGAAATATTTTCTCGACAAAGGTGAATTTAAGATGTTGATAAACCAAAAAAACAAAGCTGGAAATACTCCTTTACATTTGGCTACAATTTACCAACATCCAGCAGTTGTGAACATCCTGACTTGGGATAAAAGGACCAATTTGAAGCTCTTGAATGTAAGAGGCATGACAGCTCTTGATATTGCAGAAAATACTCTGGAAACTACTGCATCGTTCCACGGGAGGCTAGCATGGATAGCACTGAAATCAGCAGGTGCACAGCAAGCTCAAAGTTCGAATATTCCACTAAGGAAAACAGGACAGAATACACAGCAAGAGTTGTTAGTTTCGGCAACTAAACCACTAGGAGGCAACGGTGGAGATGTCAGAACTAAAATTGAAGATGTTAGGGACAGAGTTATAAATTCTTGTAACAATATTCAGCTAGTGTTACCAAACAAGCAAAGCAATAAGGACACAGTCAATACTCTTTTGGTGGTGACTACACTCATTGCCACAGTGTCGTTTGCAGCTGGTTTCACAATGCCAGGCGGCTACAATAACTCCGGCCCTCATGAGGGCACGGCAACTTTGCTAAATAAAGAAATGTTCCAAGTCTTCGTGATCTGCAACACACTTGCTATGTATAATTCTGTCCTTGTTGCAATCACTCTCATTTGGGCACAACTAGGGGATTTAAGCTTGGTGCCTCTTCGTATAGCATTGCCACTGTTGGGGCTCGCCCTTACAATGCTGTCCTTAGCATTCATGGCTGGAGTGTTTGTAGTAGTTAGTAGTCTTCAGTGGCTAGCTAGCGTTGTGATGATCATGGGTGTAGTTTTTCTTTTCACCGTGATAGCACTATTCACTCCACTCTTCTTCCCTTCCAAACTATTCCCAACTACCTCCACTTTCCGTGTACGTCGTTACATCATCTATTATCCTTTCCGTTTGGTAGTACTGGTTTCTGGAAGTCACAAAGACTTTGAAGAAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

667

Amino Acids

73.36

Weight (kDa)

8.27

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 140 - 199 1.9e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 220 - 279 4.2e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 289 - 350 3.5e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 296 - 385 2.6e-14 Ankyrin repeats (3 copies)
Ank_4 PF13637 296 - 346 3.6e-06 Ankyrin repeats (many copies)
Ank_5 PF13857 323 - 369 2.5e-07 Ankyrin repeats (many copies)
PGG PF13962 490 - 597 3.4e-29 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1424
AarI CACCTGC 1 cut(s) 1265
Acc36I ACCTGC 1 cut(s) 1265
AccB1I GGYRCC 2 cut(s) 875, 1708
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 5 cut(s) 170, 248, 299, 647, 1554
AclI AACGTT 1 cut(s) 117
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 1049, 1426
AcuI CTGAAG 2 cut(s) 492, 1787
AfaI GTAC 4 cut(s) 53, 65, 1923, 1962
AfiI CCNNNNNNNGG 7 cut(s) 298, 365, 1147, 1370, 1579, 1580, 1736
AgsI TTSAA 8 cut(s) 275, 392, 578, 938, 1168, 1177, 1403, 1991
AjnI CCWGG 2 cut(s) 18, 1549
AleI CACNNNNGTG 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 1282
Alw44I GTGCAC 1 cut(s) 1278
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 970
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 3 cut(s) 300, 453, 1570
ApaLI GTGCAC 1 cut(s) 1278
ApeKI GCWGC 6 cut(s) 557, 689, 794, 928, 998, 1532
ApoI RAATTY 2 cut(s) 1049, 1426
Asp700I GAANNNNTTC 1 cut(s) 819
AspA2I CCTAGG 1 cut(s) 718
AspS9I GGNCC 3 cut(s) 454, 1158, 1571
AsuHPI GGTGA 7 cut(s) 236, 290, 380, 638, 1058, 1513, 1843
AsuII TTCGAA 1 cut(s) 1298
AsuNHI GCTAGC 3 cut(s) 1249, 1810, 1814
AvaI CYCGRG 1 cut(s) 970
AvaII GGWCC 1 cut(s) 1158
AvrII CCTAGG 1 cut(s) 718
BaeGI GKGCMC 3 cut(s) 1282, 1586, 1687
BanI GGYRCC 2 cut(s) 875, 1708
BanII GRGCYC 3 cut(s) 170, 573, 1743
BbsI GAAGAC 3 cut(s) 768, 1612, 1793
Bbv12I GWGCWC 1 cut(s) 1282
BbvI GCAGC 6 cut(s) 544, 676, 806, 915, 1010, 1544
BccI CCATC 2 cut(s) 63, 233
BceAI ACGGC 1 cut(s) 1602
BciT130I CCWGG 2 cut(s) 20, 1551
BclI TGATCA 4 cut(s) 130, 492, 628, 1827
BfmI CTRYAG 3 cut(s) 558, 606, 918
BfuAI ACCTGC 1 cut(s) 1265
BisI GCNGC 9 cut(s) 300, 558, 647, 690, 795, 929, 999, 1533, 1555
BlnI CCTAGG 1 cut(s) 718
BlsI GCNGC 9 cut(s) 301, 559, 648, 691, 796, 930, 1000, 1534, 1556
BmcAI AGTACT 1 cut(s) 1962
Bme1390I CCNGG 2 cut(s) 20, 1551
Bme18I GGWCC 1 cut(s) 1158
BmeT110I CYCGRG 1 cut(s) 970
BmgT120I GGNCC 3 cut(s) 454, 1158, 1571
BmiI GGNNCC 2 cut(s) 877, 1710
BmrFI CCNGG 2 cut(s) 20, 1551
BmsI GCATC 3 cut(s) 806, 905, 1241
BmtI GCTAGC 3 cut(s) 1253, 1814, 1818
BpiI GAAGAC 3 cut(s) 768, 1612, 1793
BpmI CTGGAG 1 cut(s) 1797
Bpu10I CCTNAGC 1 cut(s) 1762
Bpu14I TTCGAA 1 cut(s) 1298
BsaBI GATNNNNATC 2 cut(s) 844, 855
BsaJI CCNNGG 2 cut(s) 718, 1240
BsaWI WCCGGW 2 cut(s) 308, 358
Bsc4I CCNNNNNNNGG 7 cut(s) 298, 365, 1147, 1370, 1579, 1580, 1736
Bse1I ACTGG 1 cut(s) 1968
Bse3DI GCAATG 2 cut(s) 1512, 1724
Bse8I GATNNNNATC 2 cut(s) 844, 855
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 2 cut(s) 20, 1551
BseDI CCNNGG 2 cut(s) 718, 1240
BseGI GGATG 2 cut(s) 1120, 1137
BseJI GATNNNNATC 2 cut(s) 844, 855
BseLI CCNNNNNNNGG 7 cut(s) 298, 365, 1147, 1370, 1579, 1580, 1736
BseMI GCAATG 2 cut(s) 1512, 1724
BseMII CTCAG 2 cut(s) 155, 712
BseNI ACTGG 1 cut(s) 1968
BseSI GKGCMC 3 cut(s) 1282, 1586, 1687
BseXI GCAGC 6 cut(s) 544, 676, 806, 915, 1010, 1544
BseYI CCCAGC 1 cut(s) 566
BsgI GTGCAG 2 cut(s) 270, 813
BshFI GGCC 3 cut(s) 302, 455, 1572
BshNI GGYRCC 2 cut(s) 875, 1708
BsiHKAI GWGCWC 1 cut(s) 1282
BsiHKCI CYCGRG 1 cut(s) 970
BsiSI CCGG 3 cut(s) 309, 359, 1569
BslFI GGGAC 5 cut(s) 142, 526, 661, 1028, 1427
BslI CCNNNNNNNGG 7 cut(s) 298, 365, 1147, 1370, 1579, 1580, 1736
BsmFI GGGAC 5 cut(s) 142, 526, 661, 1028, 1427
BsmI GAATGC 2 cut(s) 741, 1766
BsnI GGCC 3 cut(s) 302, 455, 1572
BsoBI CYCGRG 1 cut(s) 970
Bsp119I TTCGAA 1 cut(s) 1298
Bsp1286I GDGCHC 6 cut(s) 170, 573, 1282, 1586, 1687, 1743
Bsp13I TCCGGA 1 cut(s) 358
Bsp1407I TGTACA 1 cut(s) 63
Bsp143I GATC 8 cut(s) 37, 130, 231, 492, 502, 628, 1626, 1827
BspACI CCGC 5 cut(s) 170, 248, 299, 647, 1554
BspANI GGCC 3 cut(s) 302, 455, 1572
BspCNI CTCAG 2 cut(s) 156, 711
BspEI TCCGGA 1 cut(s) 358
BspHI TCATGA 2 cut(s) 234, 1576
BspLI GGNNCC 2 cut(s) 877, 1710
BspMAI CTGCAG 2 cut(s) 562, 610
BspMI ACCTGC 1 cut(s) 1265
BspOI GCTAGC 3 cut(s) 1253, 1814, 1818
BspPI GGATC 1 cut(s) 497
BspT104I TTCGAA 1 cut(s) 1298
BspT107I GGYRCC 2 cut(s) 875, 1708
BsrDI GCAATG 2 cut(s) 1512, 1724
BsrGI TGTACA 1 cut(s) 63
BsrI ACTGG 1 cut(s) 1968
BssECI CCNNGG 2 cut(s) 718, 1240
BssMI GATC 8 cut(s) 37, 130, 231, 492, 502, 628, 1626, 1827
BssT1I CCWWGG 1 cut(s) 718
Bst2UI CCWGG 2 cut(s) 20, 1551
Bst4CI ACNGT 7 cut(s) 26, 748, 1379, 1483, 1522, 1734, 1855
Bst6I CTCTTC 2 cut(s) 1719, 1883
BstAUI TGTACA 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 1298
BstC8I GCNNGC 8 cut(s) 170, 644, 687, 1251, 1287, 1743, 1812, 1816
BstDEI CTNAG 4 cut(s) 164, 698, 1310, 1762
BstDSI CCRYGG 1 cut(s) 1240
BstF5I GGATG 2 cut(s) 1120, 1137
BstKTI GATC 8 cut(s) 40, 133, 234, 495, 505, 631, 1629, 1830
BstMBI GATC 8 cut(s) 37, 130, 231, 492, 502, 628, 1626, 1827
BstMWI GCNNNNNNNGC 5 cut(s) 247, 563, 1259, 1286, 1772
BstNI CCWGG 2 cut(s) 20, 1551
BstNSI RCATGY 3 cut(s) 215, 353, 689
BstSCI CCNGG 2 cut(s) 18, 1549
BstSFI CTRYAG 3 cut(s) 558, 606, 918
BstSLI GKGCMC 3 cut(s) 1282, 1586, 1687
BstV1I GCAGC 6 cut(s) 544, 676, 806, 915, 1010, 1544
BstV2I GAAGAC 3 cut(s) 768, 1612, 1793
BsuRI GGCC 3 cut(s) 302, 455, 1572
BtgI CCRYGG 1 cut(s) 1240
BtsCI GGATG 2 cut(s) 1120, 1137
BtsI GCAGTG 2 cut(s) 204, 282
BtsIMutI CAGTG 7 cut(s) 204, 282, 414, 1262, 1527, 1730, 1811
BveI ACCTGC 1 cut(s) 1265
Cac8I GCNNGC 8 cut(s) 170, 644, 687, 1251, 1287, 1743, 1812, 1816
CaiI CAGNNNCTG 1 cut(s) 566
CciI TCATGA 2 cut(s) 234, 1576
Cfr13I GGNCC 3 cut(s) 454, 1158, 1571
Csp6I GTAC 4 cut(s) 52, 64, 1922, 1961
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviQI GTAC 4 cut(s) 52, 64, 1922, 1961
DdeI CTNAG 4 cut(s) 164, 698, 1310, 1762
DpnI GATC 8 cut(s) 39, 132, 233, 494, 504, 630, 1628, 1829
DpnII GATC 8 cut(s) 37, 130, 231, 492, 502, 628, 1626, 1827
DraI TTTAAA 1 cut(s) 954
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 1719, 1883
EarI CTCTTC 2 cut(s) 1719, 1883
Eco130I CCWWGG 1 cut(s) 718
Eco24I GRGCYC 3 cut(s) 170, 573, 1743
Eco47I GGWCC 1 cut(s) 1158
Eco57I CTGAAG 2 cut(s) 492, 1787
Eco88I CYCGRG 1 cut(s) 970
EcoO109I RGGNCCY 1 cut(s) 454
EcoRII CCWGG 2 cut(s) 18, 1549
EcoT14I CCWWGG 1 cut(s) 718
EcoT38I GRGCYC 3 cut(s) 170, 573, 1743
ErhI CCWWGG 1 cut(s) 718
FaqI GGGAC 5 cut(s) 142, 526, 661, 1028, 1427
FauI CCCGC 2 cut(s) 177, 255
FbaI TGATCA 4 cut(s) 130, 492, 628, 1827
Fnu4HI GCNGC 9 cut(s) 300, 558, 647, 690, 795, 929, 999, 1533, 1555
FokI GGATG 2 cut(s) 1107, 1124
FriOI GRGCYC 3 cut(s) 170, 573, 1743
Fsp4HI GCNGC 9 cut(s) 300, 558, 647, 690, 795, 929, 999, 1533, 1555
GluI GCNGC 9 cut(s) 300, 558, 647, 690, 795, 929, 999, 1533, 1555
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 1797
HaeIII GGCC 3 cut(s) 302, 455, 1572
HapII CCGG 3 cut(s) 309, 359, 1569
HindIII AAGCTT 2 cut(s) 239, 1702
HinfI GANTC 5 cut(s) 355, 362, 694, 778, 851
HpaII CCGG 3 cut(s) 309, 359, 1569
HphI GGTGA 7 cut(s) 236, 290, 380, 638, 1058, 1513, 1843
Hpy166II GTNNAC 4 cut(s) 655, 1135, 1280, 1922
Hpy188I TCNGA 5 cut(s) 114, 416, 615, 850, 1391
Hpy8I GTNNAC 4 cut(s) 655, 1135, 1280, 1922
Hpy99I CGWCG 2 cut(s) 385, 1929
HpyAV CCTTC 7 cut(s) 78, 269, 365, 516, 700, 809, 1896
HpyCH4III ACNGT 7 cut(s) 26, 748, 1379, 1483, 1522, 1734, 1855
HpyCH4IV ACGT 3 cut(s) 117, 294, 1924
HpyF10VI GCNNNNNNNGC 5 cut(s) 247, 563, 1259, 1286, 1772
HpyF3I CTNAG 4 cut(s) 164, 698, 1310, 1762
HpySE526I ACGT 3 cut(s) 117, 294, 1924
Kpn2I TCCGGA 1 cut(s) 358
Ksp22I TGATCA 4 cut(s) 130, 492, 628, 1827
Kzo9I GATC 8 cut(s) 37, 130, 231, 492, 502, 628, 1626, 1827
LmnI GCTCC 2 cut(s) 156, 346
Lsp1109I GCAGC 6 cut(s) 544, 676, 806, 915, 1010, 1544
LweI GCATC 3 cut(s) 806, 905, 1241
MaeII ACGT 3 cut(s) 117, 294, 1924
MaeIII GTNAC 7 cut(s) 199, 278, 1433, 1452, 1501, 1928, 1976
MalI GATC 8 cut(s) 39, 132, 233, 494, 504, 630, 1628, 1829
MboI GATC 8 cut(s) 37, 130, 231, 492, 502, 628, 1626, 1827
MfeI CAATTG 1 cut(s) 473
MhlI GDGCHC 6 cut(s) 170, 573, 1282, 1586, 1687, 1743
MlyI GAGTC 1 cut(s) 772
MroI TCCGGA 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 7 cut(s) 147, 264, 833, 924, 953, 1053, 1700
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 172, 1535
MspI CCGG 3 cut(s) 309, 359, 1569
MspR9I CCNGG 2 cut(s) 20, 1551
MunI CAATTG 1 cut(s) 473
Mva1269I GAATGC 2 cut(s) 741, 1766
MvaI CCWGG 2 cut(s) 20, 1551
MwoI GCNNNNNNNGC 5 cut(s) 247, 563, 1259, 1286, 1772
NdeII GATC 8 cut(s) 37, 130, 231, 492, 502, 628, 1626, 1827
NheI GCTAGC 3 cut(s) 1249, 1810, 1814
NlaIV GGNNCC 2 cut(s) 877, 1710
NmuCI GTSAC 4 cut(s) 199, 278, 1501, 1976
NspI RCATGY 3 cut(s) 215, 353, 689
NspV TTCGAA 1 cut(s) 1298
OliI CACNNNNGTG 1 cut(s) 197
PaeI GCATGC 1 cut(s) 689
PaeR7I CTCGAG 1 cut(s) 970
PagI TCATGA 2 cut(s) 234, 1576
PaqCI CACCTGC 1 cut(s) 1265
PctI GAATGC 2 cut(s) 741, 1766
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 4 cut(s) 355, 362, 694, 851
PflFI GACNNNGTC 1 cut(s) 1481
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 9 cut(s) 301, 559, 648, 691, 796, 930, 1000, 1534, 1556
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
PsiI TTATAA 1 cut(s) 1424
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 18, 1549
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 2 cut(s) 18, 1549
PspN4I GGNNCC 2 cut(s) 877, 1710
PspPI GGNCC 3 cut(s) 454, 1158, 1571
PspXI VCTCGAGB 1 cut(s) 970
PstI CTGCAG 2 cut(s) 562, 610
PstNI CAGNNNCTG 1 cut(s) 566
PsyI GACNNNGTC 1 cut(s) 1481
PvuII CAGCTG 1 cut(s) 1535
RsaI GTAC 4 cut(s) 53, 65, 1923, 1962
RsaNI GTAC 4 cut(s) 52, 64, 1922, 1961
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 7 cut(s) 147, 264, 833, 924, 953, 1053, 1700
SatI GCNGC 9 cut(s) 300, 558, 647, 690, 795, 929, 999, 1533, 1555
Sau3AI GATC 8 cut(s) 37, 130, 231, 492, 502, 628, 1626, 1827
Sau96I GGNCC 3 cut(s) 454, 1158, 1571
ScaI AGTACT 1 cut(s) 1962
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 2 cut(s) 20, 1551
SduI GDGCHC 6 cut(s) 170, 573, 1282, 1586, 1687, 1743
SfaNI GCATC 3 cut(s) 806, 905, 1241
SfcI CTRYAG 3 cut(s) 558, 606, 918
Sfr274I CTCGAG 1 cut(s) 970
SfuI TTCGAA 1 cut(s) 1298
SinI GGWCC 1 cut(s) 1158
SlaI CTCGAG 1 cut(s) 970
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 970
SmoI CTYRAG 1 cut(s) 970
SphI GCATGC 1 cut(s) 689
SsiI CCGC 5 cut(s) 170, 248, 299, 647, 1554
SspI AATATT 3 cut(s) 1031, 1303, 1441
StyD4I CCNGG 2 cut(s) 18, 1549
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 7 cut(s) 26, 748, 1379, 1483, 1522, 1734, 1855
TaiI ACGT 3 cut(s) 120, 297, 1927
TaqI TCGA 6 cut(s) 143, 813, 859, 971, 1038, 1298
TatI WGTACW 2 cut(s) 63, 1960
TauI GCSGC 3 cut(s) 302, 649, 1557
TfiI GAWTC 4 cut(s) 355, 362, 694, 851
Tru1I TTAA 7 cut(s) 147, 264, 833, 924, 953, 1053, 1700
Tru9I TTAA 7 cut(s) 147, 264, 833, 924, 953, 1053, 1700
TscAI CASTG 7 cut(s) 204, 289, 414, 1269, 1527, 1737, 1811
TseFI GTSAC 4 cut(s) 199, 278, 1501, 1976
TseI GCWGC 6 cut(s) 557, 689, 794, 928, 998, 1532
Tsp45I GTSAC 4 cut(s) 199, 278, 1501, 1976
TspDTI ATGAA 6 cut(s) 251, 434, 504, 776, 980, 1759
TspGWI ACGGA 3 cut(s) 398, 1907, 1940
TspRI CASTG 7 cut(s) 204, 289, 414, 1269, 1527, 1737, 1811
Tth111I GACNNNGTC 1 cut(s) 1481
VneI GTGCAC 1 cut(s) 1278
VpaK11BI GGWCC 1 cut(s) 1158
XapI RAATTY 2 cut(s) 1049, 1426
XceI RCATGY 3 cut(s) 215, 353, 689
XhoI CTCGAG 1 cut(s) 970
XmaJI CCTAGG 1 cut(s) 718
XmnI GAANNNNTTC 1 cut(s) 819
ZrmI AGTACT 1 cut(s) 1962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.