Rmu_co8126040.1_g000001

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8126040.1
OG0000494
Physical Location & Seq
Forward (+)
4 .. 625
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8126040.1_g000001.1.cds

Sequence Viewer

Length: 622 bp
atgtatacaacctactgttattccggcttcagcattccctctgaagtagaattactgttacaaataaatggagacaaagtaagccctggccagaatacagtgcttcaccttgcggcaagtgtaggcaatacccatctcgtcacactgatactggatcgttttccgaatcttgtcaaagtaaaaaactatcgtggagattctccgcttcatgttgcagcacacggtgggcatctatctacggtgcgctgtttggttgaaaagttgaagacactgattggtgaagagaatgcggttggtgaagagaatggtgaaaagactgcggttggtgaacagaatgcggaaggaaacacagcgctacacattgccttagaaaatcaccacaaaaaagtggccaagtttttagtcgaacaagatggattgatctcgcattcccaaaataaaagcaaaaagataccgttgtgcatggctgcggaagctggaaatcttgaccttgttcaagttatggtggtcaagacaccagctgacagggcttctgtttggaaagagtccagtggctgctcaattttgcgtgctgctatcgtgggaaggaataatggtaattctcatctgccaccaatcatta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0002831 GO:0002833 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016567 GO:0019538 GO:0023051 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0032446 GO:0032870 GO:0035690 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0098827 GO:1900150 GO:1900424 GO:1900426 GO:1901564 GO:1901700 GO:1901701 GO:1902288 GO:1902290 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

207

Amino Acids

22.29

Weight (kDa)

7.15

Isoelectric Point (pI)

27.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 6 cut(s) 113, 203, 290, 320, 338, 470
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 2 cut(s) 88, 390
AcuI CTGAAG 2 cut(s) 13, 63
AdeI CACNNNGTG 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 354
AgsI TTSAA 3 cut(s) 257, 265, 497
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 2 cut(s) 476, 521
AluI AGCT 2 cut(s) 476, 521
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 555
Aor51HI AGCGCT 1 cut(s) 354
AoxI GGCC 2 cut(s) 88, 390
ApeKI GCWGC 4 cut(s) 215, 467, 555, 572
AspLEI GCGC 2 cut(s) 246, 355
AsuHPI GGTGA 6 cut(s) 98, 290, 308, 320, 338, 368
BaeI ACNNNNGTAYC 2 cut(s) 443, 476
BalI TGGCCA 2 cut(s) 90, 392
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 227, 454, 542, 559
BccI CCATC 2 cut(s) 141, 407
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 356
BisI GCNGC 5 cut(s) 114, 216, 468, 556, 573
BlsI GCNGC 5 cut(s) 115, 217, 469, 557, 574
Bme1390I CCNGG 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bse1I ACTGG 2 cut(s) 156, 549
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 156, 549
BseXI GCAGC 4 cut(s) 227, 454, 542, 559
BshFI GGCC 2 cut(s) 90, 392
BsiSI CCGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 66
BsmI GAATGC 4 cut(s) 33, 292, 340, 427
BsnI GGCC 2 cut(s) 90, 392
Bsp143I GATC 2 cut(s) 154, 420
BspACI CCGC 6 cut(s) 113, 203, 290, 320, 338, 470
BspANI GGCC 2 cut(s) 90, 392
BspPI GGATC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 2 cut(s) 156, 549
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 154, 420
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 6 cut(s) 17, 57, 100, 224, 241, 456
Bst6I CTCTTC 2 cut(s) 276, 294
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 2 cut(s) 246, 355
BstKTI GATC 2 cut(s) 157, 423
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 154, 420
BstMWI GCNNNNNNNGC 2 cut(s) 473, 527
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstV1I GCAGC 4 cut(s) 227, 454, 542, 559
BstV2I GAAGAC 1 cut(s) 272
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 2 cut(s) 90, 392
BtsIMutI CAGTG 4 cut(s) 105, 143, 269, 556
Cac8I GCNNGC 1 cut(s) 570
CaiI CAGNNNCTG 1 cut(s) 555
CfoI GCGC 2 cut(s) 246, 355
CviAII CATG 2 cut(s) 209, 463
CviJI RGCY 9 cut(s) 27, 84, 90, 392, 467, 476, 521, 530, 555
CviKI_1 RGCY 9 cut(s) 27, 84, 90, 392, 467, 476, 521, 530, 555
DdeI CTNAG 1 cut(s) 367
DpnI GATC 2 cut(s) 156, 422
DpnII GATC 2 cut(s) 154, 420
DraIII CACNNNGTG 1 cut(s) 224
EaeI YGGCCR 2 cut(s) 88, 390
Eam1104I CTCTTC 2 cut(s) 276, 294
EarI CTCTTC 2 cut(s) 276, 294
Eco47III AGCGCT 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 13, 63
EcoRII CCWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 212, 466
FaiI YATR 4 cut(s) 6, 210, 464, 503
FatI CATG 2 cut(s) 208, 462
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 114, 216, 468, 556, 573
Fsp4HI GCNGC 5 cut(s) 114, 216, 468, 556, 573
GlaI GCGC 2 cut(s) 245, 354
GluI GCNGC 5 cut(s) 114, 216, 468, 556, 573
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 2 cut(s) 90, 392
HapII CCGG 1 cut(s) 24
HhaI GCGC 2 cut(s) 246, 355
Hin1II CATG 2 cut(s) 212, 466
Hin6I GCGC 2 cut(s) 244, 353
HinP1I GCGC 2 cut(s) 244, 353
HinfI GANTC 3 cut(s) 166, 197, 545
HpaII CCGG 1 cut(s) 24
HphI GGTGA 6 cut(s) 98, 290, 308, 320, 338, 368
Hpy166II GTNNAC 2 cut(s) 6, 329
Hpy188I TCNGA 2 cut(s) 43, 165
Hpy188III TCNNGA 2 cut(s) 485, 511
Hpy8I GTNNAC 2 cut(s) 6, 329
HpyAV CCTTC 2 cut(s) 335, 579
HpyCH4III ACNGT 6 cut(s) 17, 57, 100, 224, 241, 456
HpyCH4V TGCA 2 cut(s) 215, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 527
HpyF3I CTNAG 1 cut(s) 367
Hsp92II CATG 2 cut(s) 212, 466
HspAI GCGC 2 cut(s) 244, 353
Kzo9I GATC 2 cut(s) 154, 420
LpnPI CCDG 9 cut(s) 37, 72, 99, 104, 137, 462, 511, 531, 562
Lsp1109I GCAGC 4 cut(s) 227, 454, 542, 559
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 57, 139
MalI GATC 2 cut(s) 156, 422
MboI GATC 2 cut(s) 154, 420
MboII GAAGA 3 cut(s) 277, 293, 311
MlsI TGGCCA 2 cut(s) 90, 392
MluCI AATT 3 cut(s) 50, 561, 598
MluNI TGGCCA 2 cut(s) 90, 392
MlyI GAGTC 1 cut(s) 554
MnlI CCTC 1 cut(s) 49
Mox20I TGGCCA 2 cut(s) 90, 392
MscI TGGCCA 2 cut(s) 90, 392
Msp20I TGGCCA 2 cut(s) 90, 392
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 87
Mva1269I GAATGC 4 cut(s) 33, 292, 340, 427
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 473, 527
NdeII GATC 2 cut(s) 154, 420
NlaIII CATG 2 cut(s) 212, 466
NmuCI GTSAC 1 cut(s) 139
PctI GAATGC 4 cut(s) 33, 292, 340, 427
PfeI GAWTC 2 cut(s) 166, 197
PkrI GCNGC 5 cut(s) 115, 217, 469, 557, 574
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 521
SatI GCNGC 5 cut(s) 114, 216, 468, 556, 573
Sau3AI GATC 2 cut(s) 154, 420
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 87
SetI ASST 5 cut(s) 14, 111, 478, 492, 523
SfaNI GCATC 1 cut(s) 238
Sse9I AATT 3 cut(s) 50, 561, 598
SsiI CCGC 6 cut(s) 113, 203, 290, 320, 338, 470
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 6 cut(s) 17, 57, 100, 224, 241, 456
TaqI TCGA 1 cut(s) 405
TasI AATT 3 cut(s) 50, 561, 598
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 166, 197
TscAI CASTG 4 cut(s) 105, 150, 276, 556
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 4 cut(s) 215, 467, 555, 572
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 4 cut(s) 105, 150, 276, 556
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.