pycom03g07280

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
5792687 .. 5794063
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07280.1

Sequence Viewer

Length: 963 bp
ATGGCTGCTTCCAGTTTAAGACAAGGTGAAATAGCAATGGAGGATGTTGGCTGGAGTTCAAGACAAGATGATCAAATAACTGGCGAGGGTGCTCATGAGAACGCTGCAGGAGACACCGAGGCAGGCGACACGCGCATGGATCCTAAACTATACAGGTATGCAACGATGCCTAAATCAGGACGTCAAGAGTTTATATGGGCTATGCGCACAAAGTATTTTGCCAGAGCCACATGTGCAATACCTATATGTAATATTCCTGATCAAATAGTATCGCTGGTCCTAAGTAGTGAAAACAAAGTAAGCACCCGTGGGAACACGGTGCTTCACCTTGCTGCAAATACAGGCCACGTGCAGCTTATCCAACTAATTACCCTAAATTTCCCGGGGCTTCTCCGCAAACAAAATGATGATGGACAACTTCCGCTACATGTAGCCGCATCCGCTGGCCATCTATCCGCAGTTCGTTGTTTGGTAGACACGGCTCAAGGTAATACGTTTAATGAAAAGGACGGGAGAGGGAACACTGCGTTGCATGTCGCTGTGGAAAATAATCACCAAGATGTGGCTATGTTTTTGGTTGGCAAAGATGGATCCACGTCGCATTCTACAAATAACTCCGGTAAGAATCCCTTGTGCATGGCCGCTGAAACTGCCAATCTTGAACTCGTTAAAGCAATGGTAGCCAACACGCCAAATAGAACAGCAGACGCTAATTCTGGTAATTTTTGGCAAGGATCGAACGGCAACTCAATTCTTCTTAGTGCGATCATATGGAGGAAACAGGCAAAAAGTGGACTCAAGAAAATTAATGCAGTGTTAGTGTTGGCCCTGCTCATGTCATGCACTCTCATCAATCCACTCTTTTTCCTGGCGGGGGTTGTATGCTTGATGTATTTTAAGCGTATAGTTTCTCAATGGTGGCTGCCCAGAATCAACAGAAAGAAGTATACAAATCGATCATAG
Functional Annotation

Protein Analysis

321

Amino Acids

34.94

Weight (kDa)

9.25

Isoelectric Point (pI)

24.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 89 - 158 6e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 108 - 195 1.2e-15 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 184
Acc16I TGCGCA 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 562
AccI GTMKAC 2 cut(s) 474, 947
AccII CGCG 1 cut(s) 133
AciI CCGC 7 cut(s) 394, 422, 435, 441, 456, 642, 872
AclWI GGATC 5 cut(s) 134, 147, 585, 598, 742
AcoI YGGCCR 2 cut(s) 445, 639
AcsI RAATTY 1 cut(s) 376
AcvI CACGTG 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 176, 562, 874
AflIII ACRYGT 2 cut(s) 230, 427
AgsI TTSAA 2 cut(s) 60, 662
AjiI CACGTC 1 cut(s) 597
AjnI CCWGG 1 cut(s) 867
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 5 cut(s) 134, 147, 585, 598, 742
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 4 cut(s) 343, 445, 639, 825
ApeKI GCWGC 5 cut(s) 5, 104, 332, 352, 922
ApoI RAATTY 1 cut(s) 376
AseI ATTAAT 1 cut(s) 807
AspLEI GCGC 2 cut(s) 135, 207
AspS9I GGNCC 2 cut(s) 277, 826
AsuC2I CCSGG 2 cut(s) 383, 384
AsuHPI GGTGA 3 cut(s) 38, 317, 545
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 447
BamHI GGATCC 2 cut(s) 139, 590
BbrPI CACGTG 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 4 cut(s) 91, 319, 364, 909
BccI CCATC 3 cut(s) 404, 456, 581
BceAI ACGGC 2 cut(s) 495, 757
BciT130I CCWGG 1 cut(s) 869
BclI TGATCA 2 cut(s) 70, 259
BcnI CCSGG 2 cut(s) 383, 384
BcoDI GTCTC 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 7 cut(s) 6, 105, 333, 353, 435, 642, 923
BlsI GCNGC 7 cut(s) 7, 106, 334, 354, 436, 643, 924
Bme1390I CCNGG 3 cut(s) 383, 384, 869
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 382
BmgBI CACGTC 1 cut(s) 597
BmgT120I GGNCC 2 cut(s) 277, 826
BmiI GGNNCC 2 cut(s) 141, 592
BmrFI CCNGG 3 cut(s) 383, 384, 869
BmsI GCATC 2 cut(s) 156, 446
BpmI CTGGAG 1 cut(s) 73
BpuEI CTTGAG 2 cut(s) 468, 782
BpuMI CCSGG 2 cut(s) 383, 384
Bsa29I ATCGAT 1 cut(s) 955
BsaAI YACGTR 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 181
BsaJI CCNNGG 4 cut(s) 117, 307, 382, 383
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 562, 874
Bse1I ACTGG 2 cut(s) 12, 85
Bse3DI GCAATG 2 cut(s) 42, 681
BseBI CCWGG 1 cut(s) 869
BseCI ATCGAT 1 cut(s) 955
BseDI CCNNGG 4 cut(s) 117, 307, 382, 383
BseGI GGATG 2 cut(s) 49, 437
BseLI CCNNNNNNNGG 3 cut(s) 176, 562, 874
BseMI GCAATG 2 cut(s) 42, 681
BseNI ACTGG 2 cut(s) 12, 85
BseXI GCAGC 4 cut(s) 91, 319, 364, 909
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 4 cut(s) 345, 447, 641, 827
BshVI ATCGAT 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 383, 618
BslI CCNNNNNNNGG 3 cut(s) 176, 562, 874
BsmAI GTCTC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 4 cut(s) 345, 447, 641, 827
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 7 cut(s) 70, 139, 259, 590, 734, 765, 956
BspACI CCGC 7 cut(s) 394, 422, 435, 441, 456, 642, 872
BspANI GGCC 4 cut(s) 345, 447, 641, 827
BspDI ATCGAT 1 cut(s) 955
BspFNI CGCG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 141, 592
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 5 cut(s) 134, 147, 585, 598, 742
BsrDI GCAATG 2 cut(s) 42, 681
BsrI ACTGG 2 cut(s) 12, 85
BssECI CCNNGG 4 cut(s) 117, 307, 382, 383
BssMI GATC 7 cut(s) 70, 139, 259, 590, 734, 765, 956
BssNAI GTATAC 1 cut(s) 948
BssNI GRCGYC 1 cut(s) 181
Bst1107I GTATAC 1 cut(s) 948
Bst2UI CCWGG 1 cut(s) 869
Bst4CI ACNGT 1 cut(s) 319
BstACI GRCGYC 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 124, 445
BstDEI CTNAG 2 cut(s) 281, 758
BstDSI CCRYGG 1 cut(s) 307
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 49, 437
BstFNI CGCG 1 cut(s) 133
BstHHI GCGC 2 cut(s) 135, 207
BstKTI GATC 7 cut(s) 73, 142, 262, 593, 737, 768, 959
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 7 cut(s) 70, 139, 259, 590, 734, 765, 956
BstMWI GCNNNNNNNGC 5 cut(s) 132, 233, 440, 650, 680
BstNI CCWGG 1 cut(s) 869
BstNSI RCATGY 3 cut(s) 234, 431, 536
BstSCI CCNGG 3 cut(s) 381, 382, 867
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 4 cut(s) 91, 319, 364, 909
BstX2I RGATCY 2 cut(s) 139, 590
BstYI RGATCY 2 cut(s) 139, 590
BstZ17I GTATAC 1 cut(s) 948
Bsu15I ATCGAT 1 cut(s) 955
BsuRI GGCC 4 cut(s) 345, 447, 641, 827
BsuTUI ATCGAT 1 cut(s) 955
BtgI CCRYGG 1 cut(s) 307
BtrI CACGTC 1 cut(s) 597
BtsCI GGATG 2 cut(s) 49, 437
BtsI GCAGTG 2 cut(s) 522, 819
BtsIMutI CAGTG 2 cut(s) 522, 819
Cac8I GCNNGC 2 cut(s) 124, 445
CciI TCATGA 1 cut(s) 94
CfoI GCGC 2 cut(s) 135, 207
Cfr13I GGNCC 2 cut(s) 277, 826
Cfr9I CCCGGG 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 955
CseI GACGC 1 cut(s) 716
CviAII CATG 8 cut(s) 95, 136, 231, 428, 533, 637, 835, 840
DdeI CTNAG 2 cut(s) 281, 758
DpnI GATC 7 cut(s) 72, 141, 261, 592, 736, 767, 958
DpnII GATC 7 cut(s) 70, 139, 259, 590, 734, 765, 956
EaeI YGGCCR 2 cut(s) 445, 639
Eco47I GGWCC 1 cut(s) 277
Eco72I CACGTG 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 382
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 867
FaeI CATG 8 cut(s) 98, 139, 234, 431, 536, 640, 838, 843
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FatI CATG 8 cut(s) 94, 135, 230, 427, 532, 636, 834, 839
FauI CCCGC 1 cut(s) 865
FauNDI CATATG 1 cut(s) 770
FbaI TGATCA 2 cut(s) 70, 259
FblI GTMKAC 2 cut(s) 474, 947
Fnu4HI GCNGC 7 cut(s) 6, 105, 333, 353, 435, 642, 923
FokI GGATG 2 cut(s) 56, 424
Fsp4HI GCNGC 7 cut(s) 6, 105, 333, 353, 435, 642, 923
FspAI RTGCGCAY 1 cut(s) 206
FspI TGCGCA 1 cut(s) 206
GlaI GCGC 2 cut(s) 134, 206
GluI GCNGC 7 cut(s) 6, 105, 333, 353, 435, 642, 923
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 4 cut(s) 345, 447, 641, 827
HapII CCGG 2 cut(s) 383, 618
HgaI GACGC 1 cut(s) 716
HhaI GCGC 2 cut(s) 135, 207
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 8 cut(s) 98, 139, 234, 431, 536, 640, 838, 843
Hin6I GCGC 2 cut(s) 133, 205
HinP1I GCGC 2 cut(s) 133, 205
HinfI GANTC 3 cut(s) 625, 795, 930
HpaII CCGG 2 cut(s) 383, 618
HphI GGTGA 3 cut(s) 38, 317, 545
Hpy166II GTNNAC 3 cut(s) 475, 794, 948
Hpy188III TCNNGA 7 cut(s) 60, 95, 177, 185, 257, 659, 799
Hpy8I GTNNAC 3 cut(s) 475, 794, 948
Hpy99I CGWCG 1 cut(s) 601
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 4 cut(s) 181, 348, 494, 596
HpyCH4V TGCA 9 cut(s) 107, 161, 236, 335, 352, 532, 636, 812, 843
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 233, 440, 650, 680
HpyF3I CTNAG 2 cut(s) 281, 758
HpySE526I ACGT 4 cut(s) 181, 348, 494, 596
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 8 cut(s) 98, 139, 234, 431, 536, 640, 838, 843
HspAI GCGC 2 cut(s) 133, 205
Ksp22I TGATCA 2 cut(s) 70, 259
Kzo9I GATC 7 cut(s) 70, 139, 259, 590, 734, 765, 956
Lsp1109I GCAGC 4 cut(s) 91, 319, 364, 909
LweI GCATC 2 cut(s) 156, 446
MaeII ACGT 4 cut(s) 181, 348, 494, 596
MalI GATC 7 cut(s) 72, 141, 261, 592, 736, 767, 958
MboI GATC 7 cut(s) 70, 139, 259, 590, 734, 765, 956
MboII GAAGA 1 cut(s) 746
MflI RGATCY 2 cut(s) 139, 590
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 447
MluCI AATT 6 cut(s) 366, 376, 712, 721, 750, 804
MluNI TGGCCA 1 cut(s) 447
MlyI GAGTC 1 cut(s) 789
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 5 cut(s) 34, 79, 112, 509, 768
Mox20I TGGCCA 1 cut(s) 447
MscI TGGCCA 1 cut(s) 447
MseI TTAA 5 cut(s) 17, 498, 669, 807, 897
MslI CAYNNNNRTG 2 cut(s) 134, 558
Msp20I TGGCCA 1 cut(s) 447
MspA1I CMGCKG 2 cut(s) 443, 644
MspI CCGG 2 cut(s) 383, 618
MspR9I CCNGG 3 cut(s) 383, 384, 869
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 1 cut(s) 869
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 5 cut(s) 132, 233, 440, 650, 680
NciI CCSGG 2 cut(s) 383, 384
NdeI CATATG 1 cut(s) 770
NdeII GATC 7 cut(s) 70, 139, 259, 590, 734, 765, 956
NlaIII CATG 8 cut(s) 98, 139, 234, 431, 536, 640, 838, 843
NlaIV GGNNCC 2 cut(s) 141, 592
NsbI TGCGCA 1 cut(s) 206
NspI RCATGY 3 cut(s) 234, 431, 536
PagI TCATGA 1 cut(s) 94
PciI ACATGT 2 cut(s) 230, 427
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 2 cut(s) 625, 930
PflMI CCANNNNNTGG 1 cut(s) 562
PkrI GCNGC 7 cut(s) 7, 106, 334, 354, 436, 643, 924
PleI GAGTC 1 cut(s) 789
PmaCI CACGTG 1 cut(s) 349
PmlI CACGTG 1 cut(s) 349
PpsI GAGTC 1 cut(s) 789
Ppu21I YACGTR 1 cut(s) 349
PscI ACATGT 2 cut(s) 230, 427
PshBI ATTAAT 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 867
PspCI CACGTG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 141, 592
PspPI GGNCC 2 cut(s) 277, 826
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 139, 590
RseI CAYNNNNRTG 2 cut(s) 134, 558
SaqAI TTAA 5 cut(s) 17, 498, 669, 807, 897
SatI GCNGC 7 cut(s) 6, 105, 333, 353, 435, 642, 923
Sau3AI GATC 7 cut(s) 70, 139, 259, 590, 734, 765, 956
Sau96I GGNCC 2 cut(s) 277, 826
SchI GAGTC 1 cut(s) 789
ScrFI CCNGG 3 cut(s) 383, 384, 869
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 2 cut(s) 156, 446
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 134, 558
SmlI CTYRAG 2 cut(s) 483, 797
SmoI CTYRAG 2 cut(s) 483, 797
Sse9I AATT 6 cut(s) 366, 376, 712, 721, 750, 804
SsiI CCGC 7 cut(s) 394, 422, 435, 441, 456, 642, 872
SspI AATATT 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 381, 382, 867
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 4 cut(s) 184, 351, 497, 599
TaqI TCGA 2 cut(s) 737, 955
TasI AATT 6 cut(s) 366, 376, 712, 721, 750, 804
TauI GCSGC 2 cut(s) 437, 644
TfiI GAWTC 2 cut(s) 625, 930
Tru1I TTAA 5 cut(s) 17, 498, 669, 807, 897
Tru9I TTAA 5 cut(s) 17, 498, 669, 807, 897
TscAI CASTG 2 cut(s) 529, 819
TseI GCWGC 5 cut(s) 5, 104, 332, 352, 922
TspDTI ATGAA 1 cut(s) 516
TspMI CCCGGG 1 cut(s) 382
TspRI CASTG 2 cut(s) 529, 819
Van91I CCANNNNNTGG 1 cut(s) 562
VpaK11BI GGWCC 1 cut(s) 277
VspI ATTAAT 1 cut(s) 807
XagI CCTNNNNNAGG 1 cut(s) 174
XapI RAATTY 1 cut(s) 376
XceI RCATGY 3 cut(s) 234, 431, 536
XmaI CCCGGG 1 cut(s) 382
XmiI GTMKAC 2 cut(s) 474, 947
ZraI GACGTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.