AT4G03440

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000494
Physical Location & Seq
Reverse (-)
1523947 .. 1527628
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03440.1

Sequence Viewer

Length: 2256 bp
ATGGCACGACGAGGATTAAGGATGGACAACTCTGAAGCACATCTAGATAGAATTGAGGCACAGAGGTCAACAGATGACCAACATAAACGAAGATGCTTCCCTGTGAATGTGATAAAAAATCTAGGCACACTCAGTTCACGCAGTTTCCTTCGACGCAGAGGAGATGAAGCCACACCACCTACGACTACGATAGACATTGAATCTGTGCCAAAGTTCCTTACCACTCTCAGATTGTTGGATCTTTACAACCACCCCGGTGAATATGTGGCAATGAATTCAGAGATCTCCAGCGCAATGCGAGCTGGGAACAAAGAATTTCTGGAGAAGATGGAAAGCTACGAAACACCAATGTCATGCTTCAAGAACAACAAAGGAGATTCCATTCTTCACCTTGCTGCTGCTTTTGGTCATCTTGAGCTAGTAAAGAGCATAGTCTCTAAATTCCCATCTCTTCTGTTGGAGTTAAATTTTAAGGATCAGCTTCCGCTTCATGTGGCTGCTCGTGATGGTCATTTAACAGTTGTTAAAGCTCTTGTAGCATCGGTAACATTTTGTTCAGATAGACTGGCTGAAGAAGATAGGGAGAGGCTGAATCCATATATTCTAAAGGACAAAAATGGAGATACTGCTCTCCACTCAGCCTTGAAAGACCTCCATGAAAAAACAAAAGAACTCCATGAAAAAACAAAGGATATGCATTGGCTACGACGTAGCAAATCCAAGTCACTTTCTAATGAATCTACACACCTAATGGAGACAGCTGCTTGTCTAGTCAATGCGAACCAAGATGTTTCGTTTCTTGCAAATAAAGATGAAATCTCCCCCTTGTATTTGGCAGTTGAAGCTGGTAACGTATCACTTGTAAATGCAATGTTGAACAGCCATGTTAATAACGTTCAAGACAAAACCTTTAACTTAGCCACACAATTGAAAGGGAGAAAATCGCTTGTGCATGCAGCTTTAAAGGCAAAGAATACAGATGTTCTTGATGTTATTCTCGGTAAATACCCGAGTCTTGTCAAAGAGCGAGACGAAAAAGGACGAACTTGTCTTTCGGTTGGAGCATCTGTAGGGTTTTATCAAGGCATATGCAAGCTGTTAGACACATCAACGCTAAGCATCTTTGATTGCGACGATGATGGTTCATTTCCCATCCATAAGGCAGTGGAGAAAGGTCATGAGAATGTTGTTAAAGAGCTTCTAAAACGTTTTCCGGATTCAGTAGAGCAGCTTAACAAAGAAGGTCAGAACATTTTCCACATATCAGCAAAGAGTGGCAAATCCACATTGTTTCTTATGGAACATATCAATAAAGTCGATACGAAGAATCATCTTATGGAGGAGCAAGATATGGATGGGAATACACCTTTGCACCTGGCCACCATAAATTGGCGCCCTAAAACTGTTCGTATGCTTACTAAATTTCTTTCCATCAGAAAAAAACTCTTGGATAAACATAACTCCGTTGGCTTGAGACCTCTGGATATCGCAGAGATAAATCTGCAGTCTGACTACGTTTTTCGAGAGAGAATGACTTTGATGGTCTTGCTAGGCGTTTACAATCTAAGACAGAGAGGTATTTCTTTGCTACCGACTAGCGGGATGACACTAAGAAGTAGATCAGAAAAACTAGGTGATGGTGAAAAATACAAAGACCGTGTCAACATTCTTCTACTGGTGGCAGCTCTTGTAGCCACTATGACGTTTGCTGCAGGTTTTACAATGCCCGGTGGCTTTAGCAGCTCTGCTCCAAACACTGGCATGGCTATTTTGGTCGATGACCGTTACCTCACAACATTTATTATGAATGACACTATTGCAATGCTTACCTCAGTTTTAGCAATAGTTGCTCTTATCTGGGCACAGTTAGGAGATCCAGAACTCGCGCACAGAGCGTTTCATTTGGCTTTACCAGCACTCTTCGTTGCTCTACTCTTCATGTGTTTCACATTCTTTTATGGCGTTCTGGCTACAATACAGCATAACATCGTGCTTTCACGCATCATAAGCTTTGTATTTATTATCTTATTTATTATGACCGGAACCCTCCTTACCCCTTACGTGATCCCGCAGGTTTACGGCCTTCCTATTATTGGAGTTTTGACTAGTTCATATCTTGATTTTCTATTGCTGTTTGTTAATGAAGATGATGATGAAAAACATTACACCACCGGCTCATCTCACACGTGTGTGAAGAGTGGGGAGTCCATGGGATCTTCAAGCGGGGTCCAAGCGGAAAAGTCGAAAGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0002831 GO:0002833 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016567 GO:0019538 GO:0023051 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0032446 GO:0032870 GO:0035690 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0098827 GO:1900150 GO:1900424 GO:1900426 GO:1901564 GO:1901700 GO:1901701 GO:1902288 GO:1902290 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

751

Amino Acids

83.85

Weight (kDa)

8.19

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 101 - 180 1.7e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 363 - 436 1.1e-06 Ankyrin repeats (3 copies)
PGG PF13962 548 - 657 2e-27 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1047
Acc36I ACCTGC 2 cut(s) 1703, 2062
AccB1I GGYRCC 1 cut(s) 1392
AccB7I CCANNNNNTGG 2 cut(s) 1389, 1757
AccII CGCG 1 cut(s) 1886
AccIII TCCGGA 1 cut(s) 1213
AciI CCGC 5 cut(s) 485, 1599, 2069, 2223, 2234
AclI AACGTT 2 cut(s) 894, 1207
AclWI GGATC 5 cut(s) 246, 483, 1868, 2059, 2221
AcoI YGGCCR 1 cut(s) 1377
AcsI RAATTY 5 cut(s) 274, 314, 440, 466, 1421
AcuI CTGAAG 2 cut(s) 54, 591
AcvI CACGTG 1 cut(s) 2187
AcyI GRCGYC 1 cut(s) 1393
AfiI CCNNNNNNNGG 4 cut(s) 1389, 1598, 1757, 2093
AflIII ACRYGT 2 cut(s) 2184, 2186
AgsI TTSAA 8 cut(s) 200, 361, 646, 842, 877, 899, 931, 2220
AhlI ACTAGT 1 cut(s) 2105
AjnI CCWGG 1 cut(s) 1374
AleI CACNNNNGTG 3 cut(s) 255, 2187, 2189
Alw26I GTCTC 4 cut(s) 439, 749, 1023, 1468
AlwI GGATC 5 cut(s) 246, 483, 1868, 2059, 2221
Ama87I CYCGRG 1 cut(s) 1009
Aor13HI TCCGGA 1 cut(s) 1213
AoxI GGCC 2 cut(s) 1377, 2080
ApeKI GCWGC 9 cut(s) 395, 398, 497, 761, 956, 1228, 1682, 1709, 1740
ApoI RAATTY 5 cut(s) 274, 314, 440, 466, 1421
ArsI GACNNNNNNTTYG 2 cut(s) 1644, 1676
Asp700I GAANNNNTTC 1 cut(s) 1253
AspLEI GCGC 3 cut(s) 293, 1395, 1888
AspS9I GGNCC 1 cut(s) 2227
AsuC2I CCSGG 2 cut(s) 255, 1728
AsuHPI GGTGA 4 cut(s) 269, 380, 1646, 1652
AvaI CYCGRG 1 cut(s) 1009
AvaII GGWCC 1 cut(s) 2227
BaeGI GKGCMC 1 cut(s) 1864
BalI TGGCCA 1 cut(s) 1379
BanI GGYRCC 1 cut(s) 1392
BauI CACGAG 1 cut(s) 501
BbrPI CACGTG 1 cut(s) 2187
BbvI GCAGC 9 cut(s) 382, 385, 484, 748, 968, 1240, 1694, 1696, 1752
BceAI ACGGC 1 cut(s) 2095
BciT130I CCWGG 1 cut(s) 1376
BcnI CCSGG 2 cut(s) 255, 1728
BcoDI GTCTC 4 cut(s) 439, 749, 1023, 1468
BcuI ACTAGT 1 cut(s) 2105
BfaI CTAG 8 cut(s) 44, 122, 419, 770, 1550, 1596, 1631, 2106
BfmI CTRYAG 3 cut(s) 1068, 1502, 1710
BfoI RGCGCY 1 cut(s) 1396
BfuAI ACCTGC 2 cut(s) 1703, 2062
BglII AGATCT 1 cut(s) 282
BisI GCNGC 9 cut(s) 396, 399, 498, 762, 957, 1229, 1683, 1710, 1741
BlpI GCTNAGC 1 cut(s) 1115
BlsI GCNGC 9 cut(s) 397, 400, 499, 763, 958, 1230, 1684, 1711, 1742
Bme1390I CCNGG 3 cut(s) 255, 1376, 1728
Bme18I GGWCC 1 cut(s) 2227
BmeT110I CYCGRG 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 2227
BmiI GGNNCC 3 cut(s) 1394, 2044, 2228
BmrFI CCNGG 3 cut(s) 255, 1376, 1728
BmsI GCATC 5 cut(s) 83, 548, 1073, 1128, 2010
BpmI CTGGAG 2 cut(s) 271, 341
Bpu1102I GCTNAGC 1 cut(s) 1115
BpuEI CTTGAG 2 cut(s) 434, 1492
BpuMI CCSGG 2 cut(s) 255, 1728
BsaAI YACGTR 2 cut(s) 2062, 2187
BsaHI GRCGYC 1 cut(s) 1393
BsaI GGTCTC 1 cut(s) 1468
BsaJI CCNNGG 2 cut(s) 253, 2208
BsaWI WCCGGW 2 cut(s) 1213, 2039
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 4 cut(s) 1389, 1598, 1757, 2093
Bse118I RCCGGY 1 cut(s) 2171
Bse1I ACTGG 3 cut(s) 570, 1680, 1762
Bse3DI GCAATG 4 cut(s) 276, 300, 876, 1827
BseAI TCCGGA 1 cut(s) 1213
BseBI CCWGG 1 cut(s) 1376
BseDI CCNNGG 2 cut(s) 253, 2208
BseGI GGATG 4 cut(s) 27, 1152, 1360, 1608
BseLI CCNNNNNNNGG 4 cut(s) 1389, 1598, 1757, 2093
BseMI GCAATG 4 cut(s) 276, 300, 876, 1827
BseMII CTCAG 4 cut(s) 145, 241, 651, 1845
BseNI ACTGG 3 cut(s) 570, 1680, 1762
BseRI GAGGAG 2 cut(s) 174, 1355
BseSI GKGCMC 1 cut(s) 1864
BseXI GCAGC 9 cut(s) 382, 385, 484, 748, 968, 1240, 1694, 1696, 1752
BseYI CCCAGC 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 1886
BshFI GGCC 2 cut(s) 1379, 2082
BshNI GGYRCC 1 cut(s) 1392
BsiHKCI CYCGRG 1 cut(s) 1009
BsiSI CCGG 5 cut(s) 255, 1214, 1728, 2040, 2172
BslI CCNNNNNNNGG 4 cut(s) 1389, 1598, 1757, 2093
BsmAI GTCTC 4 cut(s) 439, 749, 1023, 1468
BsmBI CGTCTC 1 cut(s) 1023
BsnI GGCC 2 cut(s) 1379, 2082
Bso31I GGTCTC 1 cut(s) 1468
BsoBI CYCGRG 1 cut(s) 1009
Bsp1286I GDGCHC 1 cut(s) 1864
Bsp13I TCCGGA 1 cut(s) 1213
Bsp143I GATC 7 cut(s) 238, 282, 475, 1619, 1873, 2064, 2213
Bsp1720I GCTNAGC 1 cut(s) 1115
Bsp19I CCATGG 1 cut(s) 2208
BspACI CCGC 5 cut(s) 485, 1599, 2069, 2223, 2234
BspANI GGCC 2 cut(s) 1379, 2082
BspCNI CTCAG 4 cut(s) 144, 240, 650, 1844
BspEI TCCGGA 1 cut(s) 1213
BspFNI CGCG 1 cut(s) 1886
BspHI TCATGA 1 cut(s) 1177
BspLI GGNNCC 3 cut(s) 1394, 2044, 2228
BspMAI CTGCAG 2 cut(s) 1506, 1714
BspMI ACCTGC 2 cut(s) 1703, 2062
BspPI GGATC 5 cut(s) 246, 483, 1868, 2059, 2221
BspT107I GGYRCC 1 cut(s) 1392
BspTNI GGTCTC 1 cut(s) 1468
BsrDI GCAATG 4 cut(s) 276, 300, 876, 1827
BsrFI RCCGGY 1 cut(s) 2171
BsrI ACTGG 3 cut(s) 570, 1680, 1762
BssAI RCCGGY 1 cut(s) 2171
BssECI CCNNGG 2 cut(s) 253, 2208
BssMI GATC 7 cut(s) 238, 282, 475, 1619, 1873, 2064, 2213
BssNI GRCGYC 1 cut(s) 1393
BssSI CACGAG 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 2208
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 1376
Bst4CI ACNGT 5 cut(s) 520, 1405, 1658, 1784, 1866
Bst6I CTCTTC 4 cut(s) 456, 1925, 1940, 2189
BstACI GRCGYC 1 cut(s) 1393
BstAPI GCANNNNNTGC 1 cut(s) 1847
BstBAI YACGTR 2 cut(s) 2062, 2187
BstC8I GCNNGC 3 cut(s) 300, 954, 1094
BstDEI CTNAG 8 cut(s) 131, 227, 637, 916, 1115, 1565, 1610, 1831
BstDSI CCRYGG 1 cut(s) 2208
BstF5I GGATG 4 cut(s) 27, 1152, 1360, 1608
BstFNI CGCG 1 cut(s) 1886
BstH2I RGCGCY 1 cut(s) 1396
BstHHI GCGC 3 cut(s) 293, 1395, 1888
BstKTI GATC 7 cut(s) 241, 285, 478, 1622, 1876, 2067, 2216
BstMAI GTCTC 4 cut(s) 439, 749, 1023, 1468
BstMBI GATC 7 cut(s) 238, 282, 475, 1619, 1873, 2064, 2213
BstNI CCWGG 1 cut(s) 1376
BstNSI RCATGY 1 cut(s) 956
BstSCI CCNGG 3 cut(s) 253, 1374, 1726
BstSFI CTRYAG 3 cut(s) 1068, 1502, 1710
BstSLI GKGCMC 1 cut(s) 1864
BstUI CGCG 1 cut(s) 1886
BstV1I GCAGC 9 cut(s) 382, 385, 484, 748, 968, 1240, 1694, 1696, 1752
BstX2I RGATCY 4 cut(s) 238, 282, 1873, 2213
BstYI RGATCY 4 cut(s) 238, 282, 1873, 2213
BsuRI GGCC 2 cut(s) 1379, 2082
BtgI CCRYGG 1 cut(s) 2208
BtsCI GGATG 4 cut(s) 27, 1152, 1360, 1608
BtsI GCAGTG 1 cut(s) 1170
BtsIMutI CAGTG 2 cut(s) 1170, 1755
BveI ACCTGC 2 cut(s) 1703, 2062
Cac8I GCNNGC 3 cut(s) 300, 954, 1094
CciI TCATGA 1 cut(s) 1177
CfoI GCGC 3 cut(s) 293, 1395, 1888
Cfr10I RCCGGY 1 cut(s) 2171
Cfr13I GGNCC 1 cut(s) 2227
CseI GACGC 1 cut(s) 162
DdeI CTNAG 8 cut(s) 131, 227, 637, 916, 1115, 1565, 1610, 1831
DinI GGCGCC 1 cut(s) 1394
DpnI GATC 7 cut(s) 240, 284, 477, 1621, 1875, 2066, 2215
DpnII GATC 7 cut(s) 238, 282, 475, 1619, 1873, 2064, 2213
DraI TTTAAA 1 cut(s) 963
DrdI GACNNNNNNGTC 1 cut(s) 1047
DseDI GACNNNNNNGTC 1 cut(s) 1047
EaeI YGGCCR 1 cut(s) 1377
Eam1104I CTCTTC 4 cut(s) 456, 1925, 1940, 2189
EarI CTCTTC 4 cut(s) 456, 1925, 1940, 2189
Eco130I CCWWGG 1 cut(s) 2208
Eco31I GGTCTC 1 cut(s) 1468
Eco32I GATATC 1 cut(s) 1486
Eco47I GGWCC 1 cut(s) 2227
Eco57I CTGAAG 2 cut(s) 54, 591
Eco72I CACGTG 1 cut(s) 2187
Eco88I CYCGRG 1 cut(s) 1009
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 1374
EcoRV GATATC 1 cut(s) 1486
EcoT14I CCWWGG 1 cut(s) 2208
EcoT22I ATGCAT 1 cut(s) 699
EgeI GGCGCC 1 cut(s) 1394
EheI GGCGCC 1 cut(s) 1394
ErhI CCWWGG 1 cut(s) 2208
Esp3I CGTCTC 1 cut(s) 1023
FauI CCCGC 3 cut(s) 1592, 2076, 2216
FauNDI CATATG 1 cut(s) 1088
Fnu4HI GCNGC 9 cut(s) 396, 399, 498, 762, 957, 1229, 1683, 1710, 1741
FokI GGATG 4 cut(s) 34, 1139, 1367, 1615
Fsp4HI GCNGC 9 cut(s) 396, 399, 498, 762, 957, 1229, 1683, 1710, 1741
FspBI CTAG 8 cut(s) 44, 122, 419, 770, 1550, 1596, 1631, 2106
GlaI GCGC 3 cut(s) 292, 1394, 1887
GluI GCNGC 9 cut(s) 396, 399, 498, 762, 957, 1229, 1683, 1710, 1741
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 2 cut(s) 271, 341
HaeII RGCGCY 1 cut(s) 1396
HaeIII GGCC 2 cut(s) 1379, 2082
HapII CCGG 5 cut(s) 255, 1214, 1728, 2040, 2172
HgaI GACGC 1 cut(s) 162
HhaI GCGC 3 cut(s) 293, 1395, 1888
Hin1I GRCGYC 1 cut(s) 1393
Hin6I GCGC 3 cut(s) 291, 1393, 1886
HinP1I GCGC 3 cut(s) 291, 1393, 1886
HincII GTYRAC 2 cut(s) 69, 1663
HindII GTYRAC 2 cut(s) 69, 1663
HindIII AAGCTT 1 cut(s) 2008
HinfI GANTC 8 cut(s) 200, 377, 592, 737, 1012, 1217, 1327, 2204
HpaII CCGG 5 cut(s) 255, 1214, 1728, 2040, 2172
HphI GGTGA 4 cut(s) 269, 380, 1646, 1652
Hpy166II GTNNAC 5 cut(s) 69, 137, 1558, 1663, 2077
Hpy188I TCNGA 8 cut(s) 34, 230, 280, 559, 1248, 1436, 1510, 1624
Hpy8I GTNNAC 5 cut(s) 69, 137, 1558, 1663, 2077
Hpy99I CGWCG 4 cut(s) 12, 156, 711, 1136
HpyAV CCTTC 3 cut(s) 158, 1235, 2093
HpyCH4III ACNGT 5 cut(s) 520, 1405, 1658, 1784, 1866
HpyCH4IV ACGT 8 cut(s) 709, 852, 894, 1207, 1515, 1703, 2061, 2186
HpyF3I CTNAG 8 cut(s) 131, 227, 637, 916, 1115, 1565, 1610, 1831
HpySE526I ACGT 8 cut(s) 709, 852, 894, 1207, 1515, 1703, 2061, 2186
Hsp92I GRCGYC 1 cut(s) 1393
HspAI GCGC 3 cut(s) 291, 1393, 1886
KasI GGCGCC 1 cut(s) 1392
Kpn2I TCCGGA 1 cut(s) 1213
Kzo9I GATC 7 cut(s) 238, 282, 475, 1619, 1873, 2064, 2213
LmnI GCTCC 3 cut(s) 1061, 1342, 1753
Lsp1109I GCAGC 9 cut(s) 382, 385, 484, 748, 968, 1240, 1694, 1696, 1752
LweI GCATC 5 cut(s) 83, 548, 1073, 1128, 2010
MaeI CTAG 8 cut(s) 44, 122, 419, 770, 1550, 1596, 1631, 2106
MaeII ACGT 8 cut(s) 709, 852, 894, 1207, 1515, 1703, 2061, 2186
MaeIII GTNAC 4 cut(s) 544, 723, 848, 1784
MalI GATC 7 cut(s) 240, 284, 477, 1621, 1875, 2066, 2215
MboI GATC 7 cut(s) 238, 282, 475, 1619, 1873, 2064, 2213
MfeI CAATTG 1 cut(s) 926
MflI RGATCY 4 cut(s) 238, 282, 1873, 2213
MhlI GDGCHC 1 cut(s) 1864
MlsI TGGCCA 1 cut(s) 1379
MluCI AATT 8 cut(s) 51, 274, 314, 440, 466, 926, 1387, 1421
MluNI TGGCCA 1 cut(s) 1379
Mly113I GGCGCC 1 cut(s) 1393
MlyI GAGTC 2 cut(s) 1021, 2213
MmeI TCCRAC 3 cut(s) 216, 438, 1039
Mox20I TGGCCA 1 cut(s) 1379
Mph1103I ATGCAT 1 cut(s) 699
MroI TCCGGA 1 cut(s) 1213
MroXI GAANNNNTTC 1 cut(s) 1253
MscI TGGCCA 1 cut(s) 1379
MslI CAYNNNNRTG 5 cut(s) 255, 1182, 1760, 2187, 2189
Msp20I TGGCCA 1 cut(s) 1379
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 5 cut(s) 255, 1214, 1728, 2040, 2172
MspR9I CCNGG 3 cut(s) 255, 1376, 1728
MunI CAATTG 1 cut(s) 926
MvaI CCWGG 1 cut(s) 1376
MvnI CGCG 1 cut(s) 1886
NarI GGCGCC 1 cut(s) 1393
NciI CCSGG 2 cut(s) 255, 1728
NcoI CCATGG 1 cut(s) 2208
NdeI CATATG 1 cut(s) 1088
NdeII GATC 7 cut(s) 238, 282, 475, 1619, 1873, 2064, 2213
NlaIV GGNNCC 3 cut(s) 1394, 2044, 2228
NmuCI GTSAC 1 cut(s) 723
NsiI ATGCAT 1 cut(s) 699
NspI RCATGY 1 cut(s) 956
OliI CACNNNNGTG 3 cut(s) 255, 2187, 2189
PaeI GCATGC 1 cut(s) 956
PagI TCATGA 1 cut(s) 1177
PdmI GAANNNNTTC 1 cut(s) 1253
PfeI GAWTC 6 cut(s) 200, 377, 592, 737, 1217, 1327
PflFI GACNNNGTC 1 cut(s) 1658
PflMI CCANNNNNTGG 2 cut(s) 1389, 1757
PkrI GCNGC 9 cut(s) 397, 400, 499, 763, 958, 1230, 1684, 1711, 1742
PleI GAGTC 2 cut(s) 1020, 2212
PluTI GGCGCC 1 cut(s) 1396
PmaCI CACGTG 1 cut(s) 2187
PmlI CACGTG 1 cut(s) 2187
PpsI GAGTC 2 cut(s) 1020, 2212
Ppu21I YACGTR 2 cut(s) 2062, 2187
Psp1406I AACGTT 2 cut(s) 894, 1207
Psp6I CCWGG 1 cut(s) 1374
PspCI CACGTG 1 cut(s) 2187
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 1374
PspN4I GGNNCC 3 cut(s) 1394, 2044, 2228
PspPI GGNCC 1 cut(s) 2227
PsrI GAACNNNNNNTAC 2 cut(s) 2035, 2067
PstI CTGCAG 2 cut(s) 1506, 1714
PsuI RGATCY 4 cut(s) 238, 282, 1873, 2213
PsyI GACNNNGTC 1 cut(s) 1658
PvuII CAGCTG 1 cut(s) 761
RseI CAYNNNNRTG 5 cut(s) 255, 1182, 1760, 2187, 2189
SatI GCNGC 9 cut(s) 396, 399, 498, 762, 957, 1229, 1683, 1710, 1741
Sau3AI GATC 7 cut(s) 238, 282, 475, 1619, 1873, 2064, 2213
Sau96I GGNCC 1 cut(s) 2227
SchI GAGTC 2 cut(s) 1021, 2213
ScrFI CCNGG 3 cut(s) 255, 1376, 1728
SduI GDGCHC 1 cut(s) 1864
SfaNI GCATC 5 cut(s) 83, 548, 1073, 1128, 2010
SfcI CTRYAG 3 cut(s) 1068, 1502, 1710
SfoI GGCGCC 1 cut(s) 1394
SinI GGWCC 1 cut(s) 2227
SmiMI CAYNNNNRTG 5 cut(s) 255, 1182, 1760, 2187, 2189
SmlI CTYRAG 2 cut(s) 413, 1471
SmoI CTYRAG 2 cut(s) 413, 1471
SpeI ACTAGT 1 cut(s) 2105
SphI GCATGC 1 cut(s) 956
Sse9I AATT 8 cut(s) 51, 274, 314, 440, 466, 926, 1387, 1421
SsiI CCGC 5 cut(s) 485, 1599, 2069, 2223, 2234
SspDI GGCGCC 1 cut(s) 1392
SspMI CTAG 8 cut(s) 44, 122, 419, 770, 1550, 1596, 1631, 2106
StyD4I CCNGG 3 cut(s) 253, 1374, 1726
StyI CCWWGG 1 cut(s) 2208
TaaI ACNGT 5 cut(s) 520, 1405, 1658, 1784, 1866
TaiI ACGT 8 cut(s) 712, 855, 897, 1210, 1518, 1706, 2064, 2189
TaqI TCGA 5 cut(s) 151, 1317, 1522, 1776, 2243
TasI AATT 8 cut(s) 51, 274, 314, 440, 466, 926, 1387, 1421
TfiI GAWTC 6 cut(s) 200, 377, 592, 737, 1217, 1327
TscAI CASTG 2 cut(s) 1170, 1762
TseFI GTSAC 1 cut(s) 723
TseI GCWGC 9 cut(s) 395, 398, 497, 761, 956, 1228, 1682, 1709, 1740
Tsp45I GTSAC 1 cut(s) 723
TspGWI ACGGA 1 cut(s) 1453
TspRI CASTG 2 cut(s) 1170, 1762
Tth111I GACNNNGTC 1 cut(s) 1658
Van91I CCANNNNNTGG 2 cut(s) 1389, 1757
VpaK11BI GGWCC 1 cut(s) 2227
XapI RAATTY 5 cut(s) 274, 314, 440, 466, 1421
XbaI TCTAGA 1 cut(s) 43
XceI RCATGY 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 1253
XspI CTAG 8 cut(s) 44, 122, 419, 770, 1550, 1596, 1631, 2106
Zsp2I ATGCAT 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.