FvH4_3g23320

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000494
Physical Location & Seq
Forward (+)
16389917 .. 16390669
753 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23320.t1

Sequence Viewer

Length: 753 bp
ATGCATCAACATCAAATCCAGGATAGTCAGCTAACCGATCAATTGAGATTGTACCATCAGTTATACATGTATGCTAGTGAGGGAAGGCAAACTGACTTTATTACAGCTATTCAGAAGGTTGCAGATCATGATCAAAATGCTTCCATGCAGCTTCTGTCCCGGCTGAGCCCTATGAATGACTCATTTCTTCACACAGTGGTGACTTTCGGGCATGTAAGTCTAGCCATCGAGATCTTGAAGCTTCACCCCTCACTTCTGTTGGTTAAAAACTTTGAAGGTGACATTGTACTCCATGTTGCGGCCAAAACCGGAGAGGGTGATGATAATATGATAAGGTACATTATGGAGCATGTGAATCTGGGTTCCGGTCAAGGTCAAGTGACGGACATTGAAAAGGTTGATATATCAGTGTTCAGAATGAAAAATGATGAGGAAAATACTCCCTTACATGAGGCCCTGATAAATGGTAATCATTTGGAGGCAAAGTATTTGATCAAGGCTGATCCTTCAGTTTCTGTTTCTGTTAACAAGGAGAAAAAGTCCCCCTTCTATCTAGCTGCAGAAGCAGGGCTTATTGAAGTTGTGACGCTAATAGTTGACAGTATTGCAATCCAGAATAACACAGGTGATCAAGGTAATGGCGTTCCGCCTACAACCTTGGTGGTGGAGGGCAAGTCCCCATTGCATGCTGCGACTTTCGGCCAGAAAGAAGATATCTACTTATCATTACTCGGAAATATAACTATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

251

Amino Acids

27.58

Weight (kDa)

5.26

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 140 - 206 8.3e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 299, 647
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 2 cut(s) 300, 700
AcuI CTGAAG 1 cut(s) 492
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 3 cut(s) 53, 288, 338
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 4 cut(s) 238, 275, 392, 578
AjnI CCWGG 1 cut(s) 18
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 5 cut(s) 31, 107, 151, 241, 557
AluI AGCT 5 cut(s) 31, 107, 151, 241, 557
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 2 cut(s) 154, 515
AoxI GGCC 3 cut(s) 300, 453, 700
ApeKI GCWGC 3 cut(s) 148, 557, 689
AspS9I GGNCC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 5 cut(s) 211, 236, 290, 329, 638
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 3 cut(s) 160, 544, 676
BccI CCATC 2 cut(s) 63, 233
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 3 cut(s) 130, 492, 628
BcnI CCSGG 1 cut(s) 160
BfaI CTAG 3 cut(s) 75, 221, 554
BfmI CTRYAG 2 cut(s) 558, 744
BglII AGATCT 1 cut(s) 231
BisI GCNGC 4 cut(s) 149, 300, 558, 690
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 4 cut(s) 150, 301, 559, 691
Bme1390I CCNGG 2 cut(s) 20, 160
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 2 cut(s) 20, 160
BmsI GCATC 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 657
BsaWI WCCGGW 2 cut(s) 308, 365
BsaXI ACNNNNNCTCC 6 cut(s) 470, 500, 524, 554, 659, 689
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 680
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 657
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 680
BseMII CTCAG 1 cut(s) 155
BseXI GCAGC 3 cut(s) 160, 544, 676
BshFI GGCC 3 cut(s) 302, 455, 702
BsiSI CCGG 3 cut(s) 160, 309, 366
BslFI GGGAC 3 cut(s) 142, 526, 661
BslI CCNNNNNNNGG 1 cut(s) 298
BsmFI GGGAC 3 cut(s) 142, 526, 661
BsnI GGCC 3 cut(s) 302, 455, 702
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 7 cut(s) 37, 124, 130, 231, 492, 502, 628
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 2 cut(s) 299, 647
BspANI GGCC 3 cut(s) 302, 455, 702
BspCNI CTCAG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 364
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 7 cut(s) 37, 124, 130, 231, 492, 502, 628
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 196, 602
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 1 cut(s) 164
BstKTI GATC 7 cut(s) 40, 127, 133, 234, 495, 505, 631
BstMBI GATC 7 cut(s) 37, 124, 130, 231, 492, 502, 628
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 4 cut(s) 70, 215, 353, 689
BstSCI CCNGG 2 cut(s) 18, 158
BstSFI CTRYAG 2 cut(s) 558, 744
BstV1I GCAGC 3 cut(s) 160, 544, 676
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 3 cut(s) 302, 455, 702
BtsIMutI CAGTG 2 cut(s) 201, 414
Cac8I GCNNGC 1 cut(s) 687
CaiI CAGNNNCTG 2 cut(s) 154, 515
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 454
CseI GACGC 1 cut(s) 595
Csp6I GTAC 3 cut(s) 52, 287, 337
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 8 cut(s) 67, 128, 145, 212, 293, 350, 449, 686
CviQI GTAC 3 cut(s) 52, 287, 337
DdeI CTNAG 1 cut(s) 164
DpnI GATC 7 cut(s) 39, 126, 132, 233, 494, 504, 630
DpnII GATC 7 cut(s) 37, 124, 130, 231, 492, 502, 628
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 2 cut(s) 300, 700
EciI GGCGGA 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 170
Eco32I GATATC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 657
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 8 cut(s) 70, 131, 148, 215, 296, 353, 452, 689
FalI AAGNNNNNCTT 4 cut(s) 530, 562, 555, 587
FaqI GGGAC 3 cut(s) 142, 526, 661
FatI CATG 8 cut(s) 66, 127, 144, 211, 292, 349, 448, 685
FbaI TGATCA 3 cut(s) 130, 492, 628
Fnu4HI GCNGC 4 cut(s) 149, 300, 558, 690
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 4 cut(s) 149, 300, 558, 690
FspBI CTAG 3 cut(s) 75, 221, 554
GluI GCNGC 4 cut(s) 149, 300, 558, 690
HaeIII GGCC 3 cut(s) 302, 455, 702
HapII CCGG 3 cut(s) 160, 309, 366
HgaI GACGC 1 cut(s) 595
Hin1II CATG 8 cut(s) 70, 131, 148, 215, 296, 353, 452, 689
HincII GTYRAC 2 cut(s) 526, 598
HindII GTYRAC 2 cut(s) 526, 598
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 179, 355
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 3 cut(s) 160, 309, 366
HphI GGTGA 5 cut(s) 211, 236, 290, 329, 638
Hpy166II GTNNAC 2 cut(s) 526, 598
Hpy188I TCNGA 3 cut(s) 114, 416, 734
Hpy188III TCNNGA 4 cut(s) 128, 229, 235, 613
Hpy8I GTNNAC 2 cut(s) 526, 598
HpyAV CCTTC 5 cut(s) 78, 109, 269, 516, 556
HpyCH4III ACNGT 2 cut(s) 196, 602
HpyCH4V TGCA 6 cut(s) 4, 122, 148, 560, 608, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 8 cut(s) 70, 131, 148, 215, 296, 353, 452, 689
Ksp22I TGATCA 3 cut(s) 130, 492, 628
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 7 cut(s) 37, 124, 130, 231, 492, 502, 628
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 160, 544, 676
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 75, 221, 554
MaeIII GTNAC 4 cut(s) 199, 278, 379, 583
MalI GATC 7 cut(s) 39, 126, 132, 233, 494, 504, 630
MboI GATC 7 cut(s) 37, 124, 130, 231, 492, 502, 628
MboII GAAGA 2 cut(s) 179, 722
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 7 cut(s) 73, 259, 307, 424, 445, 472, 661
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 264, 525
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 3 cut(s) 160, 309, 366
MspR9I CCNGG 2 cut(s) 20, 160
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 563
NciI CCSGG 1 cut(s) 160
NdeII GATC 7 cut(s) 37, 124, 130, 231, 492, 502, 628
NlaIII CATG 8 cut(s) 70, 131, 148, 215, 296, 353, 452, 689
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 4 cut(s) 199, 278, 379, 583
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 4 cut(s) 70, 215, 353, 689
OliI CACNNNNGTG 1 cut(s) 197
PaeI GCATGC 1 cut(s) 689
PagI TCATGA 1 cut(s) 127
PciI ACATGT 1 cut(s) 66
PfeI GAWTC 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 4 cut(s) 150, 301, 559, 691
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PscI ACATGT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 454
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 2 cut(s) 154, 515
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 3 cut(s) 53, 288, 338
RsaNI GTAC 3 cut(s) 52, 287, 337
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 2 cut(s) 264, 525
SatI GCNGC 4 cut(s) 149, 300, 558, 690
Sau3AI GATC 7 cut(s) 37, 124, 130, 231, 492, 502, 628
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 20, 160
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 2 cut(s) 558, 744
SmiMI CAYNNNNRTG 1 cut(s) 197
SphI GCATGC 1 cut(s) 689
Sse9I AATT 1 cut(s) 41
SsiI CCGC 2 cut(s) 299, 647
SspMI CTAG 3 cut(s) 75, 221, 554
StyD4I CCNGG 2 cut(s) 18, 158
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 196, 602
TaqI TCGA 1 cut(s) 228
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 2 cut(s) 264, 525
Tru9I TTAA 2 cut(s) 264, 525
TscAI CASTG 2 cut(s) 201, 414
TseFI GTSAC 4 cut(s) 199, 278, 379, 583
TseI GCWGC 3 cut(s) 148, 557, 689
Tsp45I GTSAC 4 cut(s) 199, 278, 379, 583
TspDTI ATGAA 2 cut(s) 188, 434
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 2 cut(s) 201, 414
XceI RCATGY 4 cut(s) 70, 215, 353, 689
XspI CTAG 3 cut(s) 75, 221, 554
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.