Rmu_sc0042194.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042194.1
OG0000494
Physical Location & Seq
Forward (+)
1 .. 552
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042194.1_g000001.1.cds

Sequence Viewer

Length: 430 bp
aaatggtaatcacttggaggcaaagtatttgatcaaggctgatccttcagtttcattttgtgctaacgaggagagaaagtcacctttgtatctagctgcagaagctgggctcgttgaaattgtgaagctaatatatgacactactgcagttcagaataacacaggtgatcaaggtaatggcgtgcctcctatgaacttggtgatggagggcaagtccccgttgcatgctgcgattctcagccagaaggaaggtatttacttttcatttttcggatgtcctaggcataatatcaagaatgcgatttacggtagagcatttagaagacgagaaagggaggactccacttcattgtgcagcatcaacaggttatctcgaagggcttcacttcctattaaaaagatgtttatccgattctcatcgagcagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

142

Amino Acids

15.91

Weight (kDa)

9.67

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 117
AluBI AGCT 3 cut(s) 96, 105, 128
AluI AGCT 3 cut(s) 96, 105, 128
AlwI GGATC 1 cut(s) 36
AlwNI CAGNNNCTG 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 96, 228, 355
Asp700I GAANNNNTTC 1 cut(s) 380
AspA2I CCTAGG 1 cut(s) 279
AsuHPI GGTGA 3 cut(s) 73, 177, 212
AvrII CCTAGG 1 cut(s) 279
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 83, 215, 367
BccI CCATC 1 cut(s) 197
BclI TGATCA 2 cut(s) 31, 167
BfaI CTAG 2 cut(s) 93, 280
BfmI CTRYAG 2 cut(s) 97, 145
BisI GCNGC 3 cut(s) 97, 229, 356
BlnI CCTAGG 1 cut(s) 279
BlsI GCNGC 3 cut(s) 98, 230, 357
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 329
BsaBI GATNNNNATC 2 cut(s) 405, 416
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 6 cut(s) 9, 39, 63, 93, 198, 228
Bse8I GATNNNNATC 2 cut(s) 405, 416
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 279
BseJI GATNNNNATC 2 cut(s) 405, 416
BseMII CTCAG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 83, 215, 367
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 3 cut(s) 31, 41, 167
BspCNI CTCAG 1 cut(s) 250
BspMAI CTGCAG 2 cut(s) 101, 149
BspPI GGATC 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 3 cut(s) 31, 41, 167
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 183, 226
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 3 cut(s) 34, 44, 170
BstMBI GATC 3 cut(s) 31, 41, 167
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 228
BstSFI CTRYAG 2 cut(s) 97, 145
BstV1I GCAGC 3 cut(s) 83, 215, 367
BstV2I GAAGAC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 183, 226
CaiI CAGNNNCTG 1 cut(s) 105
CviAII CATG 1 cut(s) 225
CviJI RGCY 7 cut(s) 39, 96, 105, 110, 128, 241, 381
CviKI_1 RGCY 7 cut(s) 39, 96, 105, 110, 128, 241, 381
DdeI CTNAG 1 cut(s) 237
DpnI GATC 3 cut(s) 33, 43, 169
DpnII GATC 3 cut(s) 31, 41, 167
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 228
FaiI YATR 5 cut(s) 134, 136, 192, 226, 286
FaqI GGGAC 1 cut(s) 200
FatI CATG 1 cut(s) 224
FbaI TGATCA 2 cut(s) 31, 167
Fnu4HI GCNGC 3 cut(s) 97, 229, 356
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 97, 229, 356
FspBI CTAG 2 cut(s) 93, 280
GluI GCNGC 3 cut(s) 97, 229, 356
GsaI CCCAGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 228
HinfI GANTC 3 cut(s) 233, 339, 412
HphI GGTGA 3 cut(s) 73, 177, 212
Hpy188I TCNGA 3 cut(s) 154, 273, 411
Hpy188III TCNNGA 2 cut(s) 293, 373
HpyAV CCTTC 4 cut(s) 55, 239, 243, 370
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 4 cut(s) 99, 147, 224, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 228
Ksp22I TGATCA 2 cut(s) 31, 167
Kzo9I GATC 3 cut(s) 31, 41, 167
LpnPI CCDG 4 cut(s) 91, 148, 255, 350
Lsp1109I GCAGC 3 cut(s) 83, 215, 367
LweI GCATC 1 cut(s) 367
MaeI CTAG 2 cut(s) 93, 280
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 33, 43, 169
MboI GATC 3 cut(s) 31, 41, 167
MboII GAAGA 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 333
MnlI CCTC 5 cut(s) 11, 62, 196, 200, 329
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 1 cut(s) 394
Mva1269I GAATGC 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 3 cut(s) 31, 41, 167
NlaIII CATG 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 228
PaeI GCATGC 1 cut(s) 228
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 233, 412
PkrI GCNGC 3 cut(s) 98, 230, 357
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 105
PstI CTGCAG 2 cut(s) 101, 149
PstNI CAGNNNCTG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 394
SatI GCNGC 3 cut(s) 97, 229, 356
Sau3AI GATC 3 cut(s) 31, 41, 167
SchI GAGTC 1 cut(s) 333
SduI GDGCHC 1 cut(s) 112
SetI ASST 8 cut(s) 86, 98, 107, 130, 167, 176, 254, 369
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 2 cut(s) 97, 145
SphI GCATGC 1 cut(s) 228
Sse9I AATT 1 cut(s) 118
SspMI CTAG 2 cut(s) 93, 280
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 374, 420
TasI AATT 1 cut(s) 118
TfiI GAWTC 2 cut(s) 233, 412
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 3 cut(s) 96, 228, 355
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 4 cut(s) 43, 207, 253, 337
XceI RCATGY 1 cut(s) 228
XmaJI CCTAGG 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 2 cut(s) 93, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.