Rmu_sc0028923.1_g000001

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028923.1
Physical Location & Seq
Forward (+)
48 .. 674
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028923.1_g000001.1.cds

Sequence Viewer

Length: 627 bp
atggccttgagattagctaatgctccccgatctgagatacaaagagttgcaaaagaaagtggagcaaatgattatggtgagaagaccaagaataatcctgattatctactattctcaagagaaaatatgaatactctccttatagtgtcgacactggtggctgctataacttttgctgctggcttcactgtgccgggaggatataagaactctggaactgacgaaggcatggcaaccttgcgtaatacagctctattccaaatattcttgatatgcaacaccatttcaatgtacagctctattaccgttgcgattgcgcttatctgggcacaggcaggtgatcttaaaatgatttgtgttgctgtgaggactatactacccatgttaggcctagctcttataatgatgtccgtggcattcctagctggtgttgatctcgtagcgaataaccttacttgcggctacgttgtcgtggccctgggctcgtttttcatcgtccaagtagttgtgttcattcttccgctcacaatcccactttcctccaagaattgcattacacacttcattttacgtggtaaccttcgtttgctgatgatggtaactagatatgaggttgatagtggttga
Functional Annotation

Protein Analysis

208

Amino Acids

22.54

Weight (kDa)

8.73

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AarI CACCTGC 1 cut(s) 326
Acc36I ACCTGC 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 523
AccI GTMKAC 1 cut(s) 149
AciI CCGC 2 cut(s) 459, 521
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 1 cut(s) 288
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 5 cut(s) 17, 251, 297, 395, 425
AluI AGCT 5 cut(s) 17, 251, 297, 395, 425
AoxI GGCC 3 cut(s) 3, 388, 474
ApeKI GCWGC 2 cut(s) 161, 176
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 89, 350
BaeGI GKGCMC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 148, 163
BccI CCATC 1 cut(s) 589
BciT130I CCWGG 1 cut(s) 479
BcnI CCSGG 1 cut(s) 195
BfaI CTAG 3 cut(s) 392, 422, 603
BfuAI ACCTGC 1 cut(s) 326
BisI GCNGC 3 cut(s) 162, 177, 460
BlsI GCNGC 3 cut(s) 163, 178, 461
Bme1390I CCNGG 2 cut(s) 195, 479
BmgT120I GGNCC 1 cut(s) 475
BmrFI CCNGG 2 cut(s) 195, 479
BpiI GAAGAC 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 28, 100
BpuMI CCSGG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 411, 477, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 3 cut(s) 411, 477, 478
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 2 cut(s) 148, 163
BshFI GGCC 3 cut(s) 5, 390, 476
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 386
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 3 cut(s) 5, 390, 476
Bsp1286I GDGCHC 2 cut(s) 331, 485
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 3 cut(s) 29, 340, 433
BspACI CCGC 2 cut(s) 459, 521
BspANI GGCC 3 cut(s) 5, 390, 476
BspCNI CTCAG 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 291
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 3 cut(s) 411, 477, 478
BssMI GATC 3 cut(s) 29, 340, 433
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 190, 307
BstAUI TGTACA 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 411
BstEII GGTNACC 1 cut(s) 575
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 32, 343, 436
BstMBI GATC 3 cut(s) 29, 340, 433
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 2 cut(s) 193, 477
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 148, 163
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 3 cut(s) 5, 390, 476
BtgI CCRYGG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 152, 186
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 475
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 229, 382
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 33
DpnI GATC 3 cut(s) 31, 342, 435
DpnII GATC 3 cut(s) 29, 340, 433
Eco147I AGGCCT 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 485
Eco91I GGTNACC 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 485
FaeI CATG 2 cut(s) 232, 385
FatI CATG 2 cut(s) 228, 381
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 162, 177, 460
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 3 cut(s) 162, 177, 460
FspBI CTAG 3 cut(s) 392, 422, 603
GlaI GCGC 1 cut(s) 318
GluI GCNGC 3 cut(s) 162, 177, 460
HaeIII GGCC 3 cut(s) 5, 390, 476
HapII CCGG 1 cut(s) 194
HhaI GCGC 1 cut(s) 319
Hin1II CATG 2 cut(s) 232, 385
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HpaII CCGG 1 cut(s) 194
HphI GGTGA 2 cut(s) 89, 350
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 98, 117, 213, 268
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 218, 590
HpyCH4III ACNGT 2 cut(s) 190, 307
HpyCH4IV ACGT 2 cut(s) 465, 571
HpyCH4V TGCA 3 cut(s) 50, 276, 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 465, 571
Hsp92II CATG 2 cut(s) 232, 385
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 3 cut(s) 29, 340, 433
LmnI GCTCC 2 cut(s) 28, 62
Lsp1109I GCAGC 2 cut(s) 148, 163
MaeI CTAG 3 cut(s) 392, 422, 603
MaeII ACGT 2 cut(s) 465, 571
MaeIII GTNAC 2 cut(s) 575, 598
MalI GATC 3 cut(s) 31, 342, 435
MbiI CCGCTC 1 cut(s) 523
MboI GATC 3 cut(s) 29, 340, 433
MboII GAAGA 2 cut(s) 94, 509
MhlI GDGCHC 2 cut(s) 331, 485
MluCI AATT 1 cut(s) 547
MnlI CCTC 4 cut(s) 191, 360, 550, 604
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 195, 479
Mva1269I GAATGC 1 cut(s) 416
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 1 cut(s) 422
NciI CCSGG 1 cut(s) 195
NdeII GATC 3 cut(s) 29, 340, 433
NlaIII CATG 2 cut(s) 232, 385
PaqCI CACCTGC 1 cut(s) 326
PasI CCCWGGG 1 cut(s) 478
PceI AGGCCT 1 cut(s) 390
PctI GAATGC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 163, 178, 461
Ppu21I YACGTR 1 cut(s) 572
PsiI TTATAA 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 477
PspEI GGTNACC 1 cut(s) 575
PspGI CCWGG 1 cut(s) 477
PspPI GGNCC 1 cut(s) 475
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 287
SalI GTCGAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 3 cut(s) 162, 177, 460
Sau3AI GATC 3 cut(s) 29, 340, 433
Sau96I GGNCC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 195, 479
SduI GDGCHC 2 cut(s) 331, 485
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 7, 115
SmoI CTYRAG 2 cut(s) 7, 115
Sse9I AATT 1 cut(s) 547
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 2 cut(s) 459, 521
SspI AATATT 1 cut(s) 264
SspMI CTAG 3 cut(s) 392, 422, 603
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 193, 477
TaaI ACNGT 2 cut(s) 190, 307
TaiI ACGT 2 cut(s) 468, 574
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 547
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 462
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 159, 193
TseI GCWGC 2 cut(s) 161, 176
TspDTI ATGAA 4 cut(s) 143, 481, 502, 553
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 2 cut(s) 159, 193
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 3 cut(s) 392, 422, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.