Rroxscaffold_6G00401360

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000494
Physical Location & Seq
Forward (+)
23702189 .. 23715301
13113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401360.1

Sequence Viewer

Length: 939 bp
ATGGCCGACGCACTGGTAAGTGTTTTATTAGAGCAATTGAGGGTGTCCGTGCAGTTACCACTGCGTTCGGTGATCAAGAACTCATATGATGCCTTGGCATTCCGTGTTGATCCTGAATATGTATTAGTATGGTTGCTGGATACACTTGCTTTGCTGGTGATTGAACCATCACAGACACTACTCCGGCGAAACTTGCACGAGTATGAGCAAATAACTGATCCTTTCCACAAGTTGTACAGGGCTGCAAGTTTGGGCGATAAAGATGAATTTTTGGCAACCCTGCCCGCAACAAATGGTGAAAATTCTTTCATCCAGCTCATCTCTCAACCGAGTCCCCTCAAGAACACATTTCTTCACATAGCACTGAGCTATGGCCATGAAAATCTGGCGATTGAGATCGTCAACCTTCACCGTCCGCTTTTGTTTGAGAAAAATTTCCAAGGTGACACTGCACTTCATATTGCGGCCAAAGGTGGGAGACGGGGTATGGTAGGATCTCTTCTCGGTTTAATAGCGGAAACAACTCAAAGTTCAGTTACAAGTGATGGCGAAACAATAGATATTGAAAATAATATGTGGTTGTTGGAGATGAAAAATGATGAAGGAAACACCGCCTTACATGAGGCATTGATTAATGATCACGAAGGTGTGGCATGCCAGTTGGTCAACACCGATCCTTACCTTTCATTTACCGCTAATAACGAGCAAAAATCACCTCTGTATCTTGCAACGGAGGCCGGGTTTCTTTCAATTGTTGAGCTGATGCTGCTGATCAACAGAGTTGCAGATCAGAATAGCACAAGTAGCATAGGCAAGTCACCATTGCATGTTGCAATTCGTCACCGCAATAAAGAATGGAGGAACTCTCAGATTATGCACAGTTCAATTCCTGAGGAATTGAATTTCTGCAGAAAGAAAGTGTTCGATATTCTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

312

Amino Acids

34.98

Weight (kDa)

5.37

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 98 - 169 2.1e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 285, 416, 464, 515, 612, 693, 844
AclWI GGATC 4 cut(s) 104, 212, 502, 668
AcoI YGGCCR 3 cut(s) 3, 373, 465
AcsI RAATTY 4 cut(s) 266, 301, 433, 901
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 474
AgsI TTSAA 5 cut(s) 164, 566, 750, 885, 901
AleI CACNNNNGTG 1 cut(s) 645
AluBI AGCT 3 cut(s) 316, 369, 760
AluI AGCT 3 cut(s) 316, 369, 760
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 4 cut(s) 104, 212, 502, 668
AoxI GGCC 4 cut(s) 3, 373, 465, 735
ApeKI GCWGC 2 cut(s) 242, 766
ApoI RAATTY 4 cut(s) 266, 301, 433, 901
AseI ATTAAT 1 cut(s) 633
Asp700I GAANNNNTTC 2 cut(s) 434, 920
AsuC2I CCSGG 1 cut(s) 739
AsuHPI GGTGA 8 cut(s) 82, 169, 308, 401, 455, 705, 810, 833
AxyI CCTNAGG 1 cut(s) 891
BaeI ACNNNNGTAYC 2 cut(s) 704, 737
BalI TGGCCA 1 cut(s) 375
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BauI CACGAG 1 cut(s) 197
BbvI GCAGC 2 cut(s) 229, 753
BccI CCATC 2 cut(s) 175, 539
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 3 cut(s) 72, 637, 771
BcnI CCSGG 1 cut(s) 739
BcoDI GTCTC 1 cut(s) 472
BfmI CTRYAG 1 cut(s) 907
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 3 cut(s) 243, 465, 767
BlsI GCNGC 3 cut(s) 244, 466, 768
Bme1390I CCNGG 1 cut(s) 739
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 2 cut(s) 79, 753
BplI GAGNNNNNCTC 2 cut(s) 850, 882
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 739
BsaBI GATNNNNATC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 93, 439
BsaXI ACNNNNNCTCC 4 cut(s) 469, 499, 725, 755
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse1I ACTGG 2 cut(s) 18, 658
Bse21I CCTNAGG 1 cut(s) 891
Bse3DI GCAATG 1 cut(s) 821
Bse8I GATNNNNATC 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 93, 439
BseGI GGATG 1 cut(s) 309
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMI GCAATG 1 cut(s) 821
BseMII CTCAG 3 cut(s) 356, 881, 882
BseNI ACTGG 2 cut(s) 18, 658
BseXI GCAGC 2 cut(s) 229, 753
BsgI GTGCAG 2 cut(s) 71, 435
BshFI GGCC 4 cut(s) 5, 375, 467, 737
BsiSI CCGG 2 cut(s) 184, 738
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 1 cut(s) 472
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 4 cut(s) 5, 375, 467, 737
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 9 cut(s) 72, 109, 217, 396, 494, 637, 673, 771, 787
BspACI CCGC 7 cut(s) 285, 416, 464, 515, 612, 693, 844
BspANI GGCC 4 cut(s) 5, 375, 467, 737
BspCNI CTCAG 3 cut(s) 357, 880, 883
BspMAI CTGCAG 1 cut(s) 911
BspPI GGATC 4 cut(s) 104, 212, 502, 668
BsrDI GCAATG 1 cut(s) 821
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 18, 658
BssECI CCNNGG 2 cut(s) 93, 439
BssMI GATC 9 cut(s) 72, 109, 217, 396, 494, 637, 673, 771, 787
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 93, 439
Bst2BI CACGAG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 413, 881
Bst6I CTCTTC 1 cut(s) 504
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 285, 655
BstDEI CTNAG 3 cut(s) 365, 867, 891
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 9 cut(s) 75, 112, 220, 399, 497, 640, 676, 774, 790
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 9 cut(s) 72, 109, 217, 396, 494, 637, 673, 771, 787
BstMWI GCNNNNNNNGC 4 cut(s) 193, 734, 766, 804
BstNSI RCATGY 2 cut(s) 657, 830
BstSCI CCNGG 1 cut(s) 737
BstSFI CTRYAG 1 cut(s) 907
BstV1I GCAGC 2 cut(s) 229, 753
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
Bsu36I CCTNAGG 1 cut(s) 891
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 4 cut(s) 5, 375, 467, 737
BtsCI GGATG 1 cut(s) 309
BtsI GCAGTG 2 cut(s) 59, 447
BtsIMutI CAGTG 4 cut(s) 11, 59, 362, 447
Cac8I GCNNGC 2 cut(s) 285, 655
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 235
CviAII CATG 4 cut(s) 377, 620, 654, 827
CviJI RGCY 8 cut(s) 5, 242, 316, 369, 375, 467, 737, 760
CviKI_1 RGCY 8 cut(s) 5, 242, 316, 369, 375, 467, 737, 760
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 3 cut(s) 365, 867, 891
DpnI GATC 9 cut(s) 74, 111, 219, 398, 496, 639, 675, 773, 789
DpnII GATC 9 cut(s) 72, 109, 217, 396, 494, 637, 673, 771, 787
EaeI YGGCCR 3 cut(s) 3, 373, 465
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 2 cut(s) 93, 439
Eco81I CCTNAGG 1 cut(s) 891
EcoT14I CCWWGG 2 cut(s) 93, 439
ErhI CCWWGG 2 cut(s) 93, 439
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 4 cut(s) 380, 623, 657, 830
FaqI GGGAC 1 cut(s) 318
FatI CATG 4 cut(s) 376, 619, 653, 826
FauI CCCGC 1 cut(s) 292
FauNDI CATATG 1 cut(s) 85
FbaI TGATCA 3 cut(s) 72, 637, 771
Fnu4HI GCNGC 3 cut(s) 243, 465, 767
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 243, 465, 767
GluI GCNGC 3 cut(s) 243, 465, 767
HaeIII GGCC 4 cut(s) 5, 375, 467, 737
HapII CCGG 2 cut(s) 184, 738
HgaI GACGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 380, 623, 657, 830
HincII GTYRAC 2 cut(s) 403, 667
HindII GTYRAC 2 cut(s) 403, 667
HinfI GANTC 1 cut(s) 331
HpaII CCGG 2 cut(s) 184, 738
HphI GGTGA 8 cut(s) 82, 169, 308, 401, 455, 705, 810, 833
Hpy166II GTNNAC 2 cut(s) 403, 667
Hpy188I TCNGA 2 cut(s) 792, 870
Hpy188III TCNNGA 5 cut(s) 76, 113, 340, 641, 890
Hpy8I GTNNAC 2 cut(s) 403, 667
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 416, 596, 638
HpyCH4III ACNGT 2 cut(s) 413, 881
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 734, 766, 804
HpyF3I CTNAG 3 cut(s) 365, 867, 891
Hsp92II CATG 4 cut(s) 380, 623, 657, 830
Ksp22I TGATCA 3 cut(s) 72, 637, 771
Kzo9I GATC 9 cut(s) 72, 109, 217, 396, 494, 637, 673, 771, 787
Lsp1109I GCAGC 2 cut(s) 229, 753
LweI GCATC 2 cut(s) 79, 753
MaeIII GTNAC 5 cut(s) 54, 443, 535, 816, 839
MalI GATC 9 cut(s) 74, 111, 219, 398, 496, 639, 675, 773, 789
MboI GATC 9 cut(s) 72, 109, 217, 396, 494, 637, 673, 771, 787
MboII GAAGA 2 cut(s) 344, 491
MfeI CAATTG 2 cut(s) 35, 750
MflI RGATCY 1 cut(s) 494
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 9 cut(s) 35, 266, 301, 433, 750, 834, 885, 896, 901
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 7 cut(s) 33, 347, 616, 726, 727, 852, 886
Mox20I TGGCCA 1 cut(s) 375
MroXI GAANNNNTTC 2 cut(s) 434, 920
MscI TGGCCA 1 cut(s) 375
MseI TTAA 2 cut(s) 509, 633
MslI CAYNNNNRTG 2 cut(s) 201, 645
Msp20I TGGCCA 1 cut(s) 375
MspI CCGG 2 cut(s) 184, 738
MspR9I CCNGG 1 cut(s) 739
MunI CAATTG 2 cut(s) 35, 750
Mva1269I GAATGC 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 193, 734, 766, 804
NciI CCSGG 1 cut(s) 739
NdeI CATATG 1 cut(s) 85
NdeII GATC 9 cut(s) 72, 109, 217, 396, 494, 637, 673, 771, 787
NlaIII CATG 4 cut(s) 380, 623, 657, 830
NmuCI GTSAC 3 cut(s) 443, 816, 839
NspI RCATGY 2 cut(s) 657, 830
OliI CACNNNNGTG 1 cut(s) 645
PaeI GCATGC 1 cut(s) 657
PctI GAATGC 1 cut(s) 98
PdmI GAANNNNTTC 2 cut(s) 434, 920
PkrI GCNGC 3 cut(s) 244, 466, 768
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 633
PstI CTGCAG 1 cut(s) 911
PsuI RGATCY 1 cut(s) 494
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 2 cut(s) 201, 645
SaqAI TTAA 2 cut(s) 509, 633
SatI GCNGC 3 cut(s) 243, 465, 767
Sau3AI GATC 9 cut(s) 72, 109, 217, 396, 494, 637, 673, 771, 787
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 1 cut(s) 739
SetI ASST 9 cut(s) 318, 371, 408, 445, 475, 649, 684, 718, 762
SfaNI GCATC 2 cut(s) 79, 753
SfcI CTRYAG 1 cut(s) 907
SmiMI CAYNNNNRTG 2 cut(s) 201, 645
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SphI GCATGC 1 cut(s) 657
Sse9I AATT 9 cut(s) 35, 266, 301, 433, 750, 834, 885, 896, 901
SsiI CCGC 7 cut(s) 285, 416, 464, 515, 612, 693, 844
StyD4I CCNGG 1 cut(s) 737
StyI CCWWGG 2 cut(s) 93, 439
TaaI ACNGT 2 cut(s) 413, 881
TaqI TCGA 1 cut(s) 924
TasI AATT 9 cut(s) 35, 266, 301, 433, 750, 834, 885, 896, 901
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 467
Tru1I TTAA 2 cut(s) 509, 633
Tru9I TTAA 2 cut(s) 509, 633
TscAI CASTG 4 cut(s) 18, 66, 369, 454
TseFI GTSAC 3 cut(s) 443, 816, 839
TseI GCWGC 2 cut(s) 242, 766
Tsp45I GTSAC 3 cut(s) 443, 816, 839
TspDTI ATGAA 7 cut(s) 279, 298, 393, 446, 605, 615, 675
TspGWI ACGGA 3 cut(s) 37, 92, 746
TspRI CASTG 4 cut(s) 18, 66, 369, 454
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 4 cut(s) 266, 301, 433, 901
XceI RCATGY 2 cut(s) 657, 830
XmnI GAANNNNTTC 2 cut(s) 434, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.