Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015288

Physical Location & Seq

Genomic Coordinates Reverse (-)

26577768 .. 26579240

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G287300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGTGAGAGCCTCTGCTCTAAAACCCAGCAGCAAATTTTTCCTGAGAAAACACAGGAAGTGGCCAGTCTCACCCCACAACACCAAATGGCACCAAACCTTCAATCAAAACCAGGCCTTTCAAAGCCTCAAAAAATCATCACCGCCTCAAAACCAACCCCAACATCTTCTCTCCACACTCATTTACTCCTTCAACAGCTACAACTGTGAACCAAACCCTGAAGCGTACAACTTTGTCATCAAAACCCTGACCAAAACCTCCCAATTCAAAGACATCGCTTCAGTTCTTGACCGCCTTGAATTCGTCGAGAAATTCAACACACCCGAATACATTTTCGCCCATCTCATTAGTTTTTATGGCCAAGCTAAGAGAACCCAGGACGCCATTGATCTTTTTTGCAGGATTCCAAAGTTCAGGTGCGTCCCTTCTGCTCACTCGCTCAACTCCTTGCTGTATGTGCTTTGTGGGTCTAGGGAAGGTCTTAAAATGGTGCCTGAGATTTTGCTGAGGAGCCATATTATGAGCATCCGGCTCGAAGAATCGAGTTTTCAGATTTTAGTCAATTCTCTGTGTGGAATTGGGAAGGTTGGATATGCTATTGAGATAATGAATTGTATGATCAGTTATGGGTATGGTTTGAATGTAAAGATGTGCTCTTTGATATTGTCATCACTTTGTGAACAAAAGGATTCATCTGGTTTTGAGGTGCTGGGTTTTGTAGAAGAAATGAAGAAACTTGGGTTTTGTCCTGGTATGATGGACTATTCAAATGTGATTAGGTATATGGTGAAACAGGGGAGGGGTTTGGATGCTTTGAATGTTTTGGTTAAGATGAAAGTGGAGGGAATTAAGCCTGACATTGTTTGCTATACCATGGTCTTACATGGTGTCATTGCAGAAGGGGATTACAAGAACGCCGATGAGCTGTTTGATGAATTGCTTCTGTTGGGTTTGGTTCCTGATGTTTATACTTACAATGTGTATGTAAATGGATTGTGTAAGCAAAATAAGGTGAAAGATGGATTAAAGATGATTTCTTCCATGGAAGAGTTGGGGTGCAAGCCTAATTTGATTACTTATAACATTTTATTGAAGGGTTTATGCAATACTGGTGAGCTTAGTAGGGCCAGAGAGCTTGTGAGTGAGATGACATTAAAGGGTATTGGGGTTAACTTGCAGACACATAGGATAATGCTGGATGGTCTGTTTGGCCAAGGAGATATTGATGAAGCTTGCATCTTTATGGACGAAATGTTAGATAAGTTTCTCTGTCGTTTTTGTTCCAGCTTTGATGAGGTAATTTATGGGTTGTGCCGAAAGGGTTTGGTTTGTAAAGCAATGGACTTACTGAAGAAAATGGTGGATAAGAATGTTGCGCCCGGAGCAAAGGCTTGGGAAGCACTACTTCTTAGCTCAGGATCTGAACCCGGTTTTGCTGAGACTACCTGGACTGATTTGGTGAACCCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 dsrm

Protein Analysis

491

Amino Acids

55.22

Weight (kDa)

8.17

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38420
fragaria_vesca	FvH4_6g10340
malus_domestica	MD04G1169100.v1.1 MD12G1182800.v1.1
prunus_persica	Prupe.6G287300_v2.0.a1
pyrus_communis	pycom04g14980 pycom12g17160
rosa_laevigata	RLG00000024949
rosa_multiflora	Rmu_sc0001521.1_g000049
rosa_roxburghii	Rroxscaffold_6G00418830
rosa_rugosa	Rorug03G0048500 Rorug03G0048700
rosa_samantha	Rh3BG110100 Rh3CG111600 Rh3DG111700
rosa_wichuraiana	Rw3G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
AccB1I	GGYRCC	2 cut(s)	90, 490
AciI	CCGC	2 cut(s)	143, 292
AclWI	GGATC	1 cut(s)	1426
AcoI	YGGCCR	3 cut(s)	62, 358, 1210
AcsI	RAATTY	3 cut(s)	35, 299, 311
AcuI	CTGAAG	3 cut(s)	240, 264, 1370
AcyI	GRCGYC	1 cut(s)	381
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	227
AjnI	CCWGG	4 cut(s)	111, 375, 748, 1445
AluBI	AGCT	8 cut(s)	198, 365, 925, 1117, 1135, 1232, 1287, 1413
AluI	AGCT	8 cut(s)	198, 365, 925, 1117, 1135, 1232, 1287, 1413
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	2 cut(s)	73, 1433
AlwI	GGATC	1 cut(s)	1426
AlwNI	CAGNNNCTG	1 cut(s)	1421
AoxI	GGCC	5 cut(s)	62, 114, 358, 1125, 1210
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	3 cut(s)	35, 299, 311
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	1378
AspS9I	GGNCC	1 cut(s)	1125
AsuC2I	CCSGG	2 cut(s)	1380, 1428
AsuHPI	GGTGA	7 cut(s)	16, 63, 132, 799, 1024, 1124, 1471
BalI	TGGCCA	3 cut(s)	64, 360, 1212
BanI	GGYRCC	2 cut(s)	90, 490
Bbv12I	GWGCWC	1 cut(s)	656
BbvCI	CCTCAGC	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	4 cut(s)	348, 751, 1013, 1193
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	4 cut(s)	113, 377, 750, 1447
BclI	TGATCA	1 cut(s)	618
BcnI	CCSGG	2 cut(s)	1380, 1428
BcoDI	GTCTC	2 cut(s)	73, 1433
BfaI	CTAG	1 cut(s)	471
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	6 cut(s)	113, 377, 750, 1380, 1428, 1447
BmgT120I	GGNCC	1 cut(s)	1125
BmiI	GGNNCC	4 cut(s)	92, 492, 512, 957
BmrFI	CCNGG	6 cut(s)	113, 377, 750, 1380, 1428, 1447
BmsI	GCATC	3 cut(s)	534, 799, 1245
Bpu10I	CCTNAGC	2 cut(s)	506, 1414
BpuMI	CCSGG	2 cut(s)	1380, 1428
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	375, 873, 1041, 1213
Bse1I	ACTGG	2 cut(s)	65, 1114
Bse3DI	GCAATG	2 cut(s)	891, 1344
BseBI	CCWGG	4 cut(s)	113, 377, 750, 1447
BseDI	CCNNGG	4 cut(s)	375, 873, 1041, 1213
BseGI	GGATG	3 cut(s)	525, 814, 1204
BseMI	GCAATG	2 cut(s)	891, 1344
BseMII	CTCAG	5 cut(s)	35, 486, 497, 1428, 1428
BseNI	ACTGG	2 cut(s)	65, 1114
BseRI	GAGGAG	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	2 cut(s)	26, 709
BshFI	GGCC	5 cut(s)	64, 116, 360, 1127, 1212
BshNI	GGYRCC	2 cut(s)	90, 490
BsiHKAI	GWGCWC	1 cut(s)	656
BsiSI	CCGG	3 cut(s)	529, 1380, 1428
BslFI	GGGAC	1 cut(s)	407
BsmAI	GTCTC	2 cut(s)	73, 1433
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	5 cut(s)	64, 116, 360, 1127, 1212
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	3 cut(s)	388, 618, 1418
Bsp19I	CCATGG	2 cut(s)	873, 1041
BspACI	CCGC	2 cut(s)	143, 292
BspANI	GGCC	5 cut(s)	64, 116, 360, 1127, 1212
BspCNI	CTCAG	5 cut(s)	36, 487, 498, 1427, 1429
BspLI	GGNNCC	4 cut(s)	92, 492, 512, 957
BspPI	GGATC	1 cut(s)	1426
BspT107I	GGYRCC	2 cut(s)	90, 490
BsrDI	GCAATG	2 cut(s)	891, 1344
BsrI	ACTGG	2 cut(s)	65, 1114
BssECI	CCNNGG	4 cut(s)	375, 873, 1041, 1213
BssMI	GATC	3 cut(s)	388, 618, 1418
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	3 cut(s)	873, 1041, 1213
Bst2UI	CCWGG	4 cut(s)	113, 377, 750, 1447
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	1041
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	1061, 1234
BstDEI	CTNAG	8 cut(s)	44, 366, 495, 506, 1118, 1409, 1414, 1437
BstDSI	CCRYGG	2 cut(s)	873, 1041
BstF5I	GGATG	3 cut(s)	525, 814, 1204
BstHHI	GCGC	1 cut(s)	1378
BstKTI	GATC	3 cut(s)	391, 621, 1421
BstMAI	GTCTC	2 cut(s)	73, 1433
BstMBI	GATC	3 cut(s)	388, 618, 1418
BstMWI	GCNNNNNNNGC	3 cut(s)	457, 1382, 1397
BstNI	CCWGG	4 cut(s)	113, 377, 750, 1447
BstSCI	CCNGG	6 cut(s)	111, 375, 748, 1378, 1426, 1445
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	1418
BstYI	RGATCY	1 cut(s)	1418
BsuRI	GGCC	5 cut(s)	64, 116, 360, 1127, 1212
BtgI	CCRYGG	2 cut(s)	873, 1041
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	525, 814, 1204
Cac8I	GCNNGC	2 cut(s)	1061, 1234
CaiI	CAGNNNCTG	1 cut(s)	1421
CfoI	GCGC	1 cut(s)	1378
Cfr13I	GGNCC	1 cut(s)	1125
CseI	GACGC	2 cut(s)	389, 409
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	3 cut(s)	874, 884, 1042
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	8 cut(s)	44, 366, 495, 506, 1118, 1409, 1414, 1437
DpnI	GATC	3 cut(s)	390, 620, 1420
DpnII	GATC	3 cut(s)	388, 618, 1418
DraIII	CACNNNGTG	1 cut(s)	677
EaeI	YGGCCR	3 cut(s)	62, 358, 1210
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
Eco130I	CCWWGG	3 cut(s)	873, 1041, 1213
Eco147I	AGGCCT	1 cut(s)	116
Eco57I	CTGAAG	3 cut(s)	240, 264, 1370
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	4 cut(s)	111, 375, 748, 1445
EcoT14I	CCWWGG	3 cut(s)	873, 1041, 1213
ErhI	CCWWGG	3 cut(s)	873, 1041, 1213
FaeI	CATG	3 cut(s)	877, 887, 1045
FalI	AAGNNNNNCTT	2 cut(s)	1389, 1421
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	3 cut(s)	873, 883, 1041
FbaI	TGATCA	1 cut(s)	618
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	3 cut(s)	512, 821, 1211
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	1377
GluI	GCNGC	1 cut(s)	31
GsaI	CCCAGC	2 cut(s)	30, 713
HaeIII	GGCC	5 cut(s)	64, 116, 360, 1127, 1212
HapII	CCGG	3 cut(s)	529, 1380, 1428
HgaI	GACGC	2 cut(s)	389, 409
HhaI	GCGC	1 cut(s)	1378
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	3 cut(s)	877, 887, 1045
Hin6I	GCGC	1 cut(s)	1376
HinP1I	GCGC	1 cut(s)	1376
HincII	GTYRAC	1 cut(s)	1171
HindII	GTYRAC	1 cut(s)	1171
HindIII	AAGCTT	1 cut(s)	1230
HinfI	GANTC	3 cut(s)	403, 539, 689
HpaI	GTTAAC	1 cut(s)	1171
HpaII	CCGG	3 cut(s)	529, 1380, 1428
HphI	GGTGA	7 cut(s)	16, 63, 132, 799, 1024, 1124, 1471
Hpy166II	GTNNAC	4 cut(s)	209, 680, 1171, 1462
Hpy188I	TCNGA	2 cut(s)	552, 1423
Hpy188III	TCNNGA	5 cut(s)	43, 287, 307, 959, 1416
Hpy8I	GTNNAC	4 cut(s)	209, 680, 1171, 1462
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	7 cut(s)	109, 199, 435, 470, 577, 893, 1087
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	6 cut(s)	399, 896, 1059, 1104, 1177, 1236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	457, 1382, 1397
HpyF3I	CTNAG	8 cut(s)	44, 366, 495, 506, 1118, 1409, 1414, 1437
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	877, 887, 1045
HspAI	GCGC	1 cut(s)	1376
Ksp22I	TGATCA	1 cut(s)	618
KspAI	GTTAAC	1 cut(s)	1171
Kzo9I	GATC	3 cut(s)	388, 618, 1418
LmnI	GCTCC	2 cut(s)	510, 1382
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	3 cut(s)	534, 799, 1245
MaeI	CTAG	1 cut(s)	471
MalI	GATC	3 cut(s)	390, 620, 1420
MboI	GATC	3 cut(s)	388, 618, 1418
MboII	GAAGA	7 cut(s)	158, 548, 734, 742, 1029, 1058, 1363
MflI	RGATCY	1 cut(s)	1418
MhlI	GDGCHC	1 cut(s)	656
MlsI	TGGCCA	3 cut(s)	64, 360, 1212
MluNI	TGGCCA	3 cut(s)	64, 360, 1212
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	9 cut(s)	22, 137, 156, 268, 501, 697, 792, 835, 1288
Mox20I	TGGCCA	3 cut(s)	64, 360, 1212
MroXI	GAANNNNTTC	1 cut(s)	939
MscI	TGGCCA	3 cut(s)	64, 360, 1212
MseI	TTAA	7 cut(s)	483, 828, 849, 1025, 1154, 1170, 1471
MslI	CAYNNNNRTG	1 cut(s)	1241
Msp20I	TGGCCA	3 cut(s)	64, 360, 1212
MspI	CCGG	3 cut(s)	529, 1380, 1428
MspR9I	CCNGG	6 cut(s)	113, 377, 750, 1380, 1428, 1447
MvaI	CCWGG	4 cut(s)	113, 377, 750, 1447
MwoI	GCNNNNNNNGC	3 cut(s)	457, 1382, 1397
NciI	CCSGG	2 cut(s)	1380, 1428
NcoI	CCATGG	2 cut(s)	873, 1041
NdeII	GATC	3 cut(s)	388, 618, 1418
NlaIII	CATG	3 cut(s)	877, 887, 1045
NlaIV	GGNNCC	4 cut(s)	92, 492, 512, 957
PceI	AGGCCT	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	3 cut(s)	403, 539, 689
PkrI	GCNGC	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	1080
Psp6I	CCWGG	4 cut(s)	111, 375, 748, 1445
PspFI	CCCAGC	2 cut(s)	26, 709
PspGI	CCWGG	4 cut(s)	111, 375, 748, 1445
PspN4I	GGNNCC	4 cut(s)	92, 492, 512, 957
PspPI	GGNCC	1 cut(s)	1125
PstNI	CAGNNNCTG	1 cut(s)	1421
PsuI	RGATCY	1 cut(s)	1418
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	1241
SaqAI	TTAA	7 cut(s)	483, 828, 849, 1025, 1154, 1170, 1471
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	3 cut(s)	388, 618, 1418
Sau96I	GGNCC	1 cut(s)	1125
ScrFI	CCNGG	6 cut(s)	113, 377, 750, 1380, 1428, 1447
SduI	GDGCHC	1 cut(s)	656
SfaNI	GCATC	3 cut(s)	534, 799, 1245
SmiMI	CAYNNNNRTG	1 cut(s)	1241
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	2 cut(s)	143, 292
SspMI	CTAG	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	6 cut(s)	111, 375, 748, 1378, 1426, 1445
StyI	CCWWGG	3 cut(s)	873, 1041, 1213
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	306, 534, 542
TfiI	GAWTC	3 cut(s)	403, 539, 689
Tru1I	TTAA	7 cut(s)	483, 828, 849, 1025, 1154, 1170, 1471
Tru9I	TTAA	7 cut(s)	483, 828, 849, 1025, 1154, 1170, 1471
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	6 cut(s)	623, 681, 743, 848, 948, 1242
XapI	RAATTY	3 cut(s)	35, 299, 311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1048
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.