Rorug03G0048500

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
3776350 .. 3780114
3765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0048500.1

Sequence Viewer

Length: 2556 bp
ATGCTAAGTGCTACACTATTTGGAGTTCTAATTGTGCTAACTCCAAAGCTATACCATGTCCATGATCATGTCGAAGCAGCTCAGCCTCACCGCATTCTTGTAGACACAGACGTCGATACAGATGATGTTCTTGCTCTTCTTTATCTCTTGAAGCAAAACAGGACGGAATTCGATTTACAGGCGATCACTATTAACTCAAATGGATGGAGCGATGCCGGGCACGCTGTGAATTACATATATGACATCCTTTTCGTGATGGATCGAGACAACATTGCTGTTGGTGTGGGAGGTGAAGGTGGCATCTTGCCTAATGGTACCTTCCTTCCAAATGTTGGGGGTTATCACCCTATTATTGACCAGGGCGCGTCAACAGCCGGTGGTTGCAGATACAGACAAGCAATTCCACCGGGGAAATATGGTCGTCTATACACAAATACAAACTATGGCATACGCAAGGCCTTGCTTCCTCAGGGTGGGAGAAAATATGTACCTGTAGAACAAGCTACAGCTCAACAAGTGATGAAAGATGCGGTGTCTGCAGGTTCCATCATTGTGTTTGTTCTAGGCACACATACAAATTTAGCAATTTTTCTTATGACTAATCCTCACCTTAAGAAAAATATTGAGCATATATATGTCATGGGAGGTGCTATTGAACCTGGCATCGGTAATTTGTTCCCCCCAGACTCCAATCCATATGCAGAGTTCAATTTCTTTGGAGATCCTTTTGCTGCATACACGGTATTGCATTCTGGCGTTCCAATCACACTCATTCCTTTAGATGCGACAAGGACGATTCCTGTAAACAAGAATTTCTTTGCTGCATTTGAACAGAAACAAGATACATTTGAGGCACAATATAGCTTCCAGACCTTGAAAATGGTTCGTGATACATGGCCTAACAATCAGTTTCATGAGGAATATTGCTTCTGGGATTCTTTTATGGTTGGTGTTGCGCTGTCTCAAATGCGTAACTTAGAGAGATCTGATCAAGATCATGGAGGAGAAAATGAGTTTGCGGAAATGGAATATATGAACATCTCAGTGGTTACTTCAAATACACCTTATGGAATCTCAGATGGCTCAAATCCCCTCATCAGTGGGGGTTTGATCCCAAAGTTCAATTTACAGAAGAATGGAGTGCATAGTGGTCATGTTCAGCTAGGTTTGCAAGACCCATTTTGCCTTGTCAAGGGGGGTAAAGGAAAATGTCAGGATGGTTACACACAGAAGGCAACTGGTCCGGAAGCCGTTTCTGTTCTTGTTGCAACAGAAGCTAAACCAAATTGTGACATTGACGAGAAGATGCTTACGAAAAAGTTCTATAAAAGTTTCTTGGAAGTTATAAATCGACCGAATAAGCAAACCGCACGACTTAGTAACACTAGAGCAGCACAGTTTCAGCCTGATGAGTATGAAAGAGTAGTCCAAAAGCAAAAAGCAGATTTTGAAAAGAAAAACTCGATGGGTAAACCTGTAGTTTTTGACATGGATATGAGTGCCGGGGATTTTCTAGCCCTTCTATATCTGCTAAATTTACCTGCAGAACTGATCAACCTCCAGGGAATACTAGTTACTCCAAATGGGTGGGCAACTGCTGCAACCATAGAAATTCTATATGACATACTGCATATGATGGAGCGTGATGATATTCAAGTTGGTCTTGGAAATGTATTTGCAGTTGGACAATCTTATTCATCTGTGACTTTCACTTCGCTCGGAGACTGCAGCTACTCTAAGTCCATTCCTCACGGCAGCGGTGGCTTCTTGGACTCTGATACACTCTATGGATTTGCTCGTGACTTGCCTCGTAGTCCTAGAAGATACAAACCAGAAATTAGAGGAAGCCCTGGATTTGGACAACCGACTGCACTAGATGTTTGGAAGTCCATCGTAAAATCACTGCATCCAGGATCCAAGATTACTTTGTTGACCAATGGACCGTTGACAAATTTAGCCGAAATCATTCTTTCTGAGAACAACACAGACTCAGTGGTCCGGGAAGTATTTATCGTTGGGGGACACATTGTGGATGAAAATGATAATGCAAGAGGGAATGTTTTCACTGTTGCTTCAAATGAATATGCAGACTTTAACATGTTTCTTGACCCTTTGGCTGCAAAAGCAGTTTTCGATTCCAAACTGAACATTACAATGATTCCATGGAAAACCCAAAAGCAAGTCAGTTCTTTCCAGAACATTCTCAATACATTGCAACAGCAGCTAACAAATAGTCATAGGACTCCTCAAGCTGCATTTGCCCAAAATCTAATTTCTAGGCTATGGCAACTAAAACAAAATCATCATAGCTACCATCACATGGACACATTTTTAGGAGAAATACTTGGTGCTGTGACCTTGGCTGGAAATGGAAATCATTCTCAATTGAACCAGACCTTTAAGTTTATTCCCCTCAAGGTTGTGGCTGAGGGAGACGAATCAGTAATCGGGCAGATGCTTATTGATGACCAAAAACAAGCAAAAATGGTGAAGGTACTATGTAGTGTAAATCAAAATGCATTTTATGAACAATTTGCTAATGTAATTATGTCATAG

Protein Analysis

851

Amino Acids

94.12

Weight (kDa)

5.84

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IU_nuc_hydro PF01156 32 - 353 4.1e-39 Inosine-uridine preferring nucleoside hydrolase
IU_nuc_hydro PF01156 493 - 843 2.9e-35 Inosine-uridine preferring nucleoside hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38420
fragaria_vesca FvH4_6g10340
malus_domestica MD04G1169100.v1.1 MD12G1182800.v1.1
prunus_persica Prupe.6G287300_v2.0.a1
pyrus_communis pycom04g14980 pycom12g17160
rosa_laevigata RLG00000024949
rosa_multiflora Rmu_sc0001521.1_g000049
rosa_roxburghii Rroxscaffold_6G00418830
rosa_rugosa Rorug03G0048500 Rorug03G0048700
rosa_samantha Rh3BG110100 Rh3CG111600 Rh3DG111700
rosa_wichuraiana Rw3G009060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1346
AasI GACNNNNNNGTC 2 cut(s) 110, 1994
AatII GACGTC 1 cut(s) 114
Acc36I ACCTGC 2 cut(s) 530, 1549
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AccB7I CCANNNNNTGG 2 cut(s) 332, 2320
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 365
AccIII TCCGGA 1 cut(s) 1243
AciI CCGC 5 cut(s) 91, 530, 1019, 1368, 1758
AclWI GGATC 5 cut(s) 267, 716, 1105, 1908, 1921
AcsI RAATTY 6 cut(s) 167, 577, 811, 1534, 1611, 1951
AcyI GRCGYC 1 cut(s) 111
AdeI CACNNNGTG 2 cut(s) 226, 2029
AfaI GTAC 3 cut(s) 316, 489, 2496
AfiI CCNNNNNNNGG 6 cut(s) 332, 473, 665, 1192, 1856, 2320
AflII CTTAAG 1 cut(s) 611
AflIII ACRYGT 1 cut(s) 2097
AhlI ACTAGT 1 cut(s) 1570
AjnI CCWGG 5 cut(s) 357, 658, 1560, 1849, 1909
Alw26I GTCTC 4 cut(s) 258, 966, 1716, 2427
AlwI GGATC 5 cut(s) 267, 716, 1105, 1908, 1921
Aor13HI TCCGGA 1 cut(s) 1243
AoxI GGCC 2 cut(s) 456, 896
ApoI RAATTY 6 cut(s) 167, 577, 811, 1534, 1611, 1951
ArsI GACNNNNNNTTYG 4 cut(s) 233, 265, 1696, 1728
Asp700I GAANNNNTTC 4 cut(s) 1319, 1965, 2060, 2377
Asp718I GGTACC 1 cut(s) 314
AspLEI GCGC 2 cut(s) 365, 958
AspS9I GGNCC 3 cut(s) 1241, 1940, 1996
AsuC2I CCSGG 4 cut(s) 217, 408, 1504, 2000
AsuHPI GGTGA 5 cut(s) 80, 302, 335, 599, 2500
AvaII GGWCC 3 cut(s) 1241, 1940, 1996
AxyI CCTNAGG 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 222
BamHI GGATCC 1 cut(s) 1913
BanI GGYRCC 1 cut(s) 314
BauI CACGAG 1 cut(s) 1797
BbvCI CCTCAGC 1 cut(s) 2427
BccI CCATC 9 cut(s) 198, 250, 554, 1073, 1211, 1459, 1630, 1898, 2322
BceAI ACGGC 2 cut(s) 1235, 1768
BciT130I CCWGG 5 cut(s) 359, 660, 1562, 1851, 1911
BclI TGATCA 3 cut(s) 64, 988, 1551
BcnI CCSGG 4 cut(s) 217, 408, 1504, 2000
BcoDI GTCTC 4 cut(s) 258, 966, 1716, 2427
BcuI ACTAGT 1 cut(s) 1570
BfaI CTAG 8 cut(s) 563, 1163, 1386, 1514, 1571, 1818, 1874, 2277
BfmI CTRYAG 6 cut(s) 492, 504, 537, 1476, 1542, 1726
BfrI CTTAAG 1 cut(s) 611
BfuAI ACCTGC 2 cut(s) 530, 1549
BglII AGATCT 1 cut(s) 983
BlpI GCTNAGC 1 cut(s) 81
Bme1390I CCNGG 9 cut(s) 217, 359, 408, 660, 1504, 1562, 1851, 1911, 2000
Bme18I GGWCC 3 cut(s) 1241, 1940, 1996
BmgT120I GGNCC 3 cut(s) 1241, 1940, 1996
BmiI GGNNCC 3 cut(s) 316, 544, 1915
BmrFI CCNGG 9 cut(s) 217, 359, 408, 660, 1504, 1562, 1851, 1911, 2000
BmsI GCATC 8 cut(s) 202, 309, 517, 672, 772, 1296, 1915, 2445
BpmI CTGGAG 1 cut(s) 1544
Bpu10I CCTNAGC 1 cut(s) 2427
Bpu1102I GCTNAGC 1 cut(s) 81
BpuEI CTTGAG 2 cut(s) 2232, 2399
BpuMI CCSGG 4 cut(s) 217, 408, 1504, 2000
BsaBI GATNNNNATC 1 cut(s) 993
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 7 cut(s) 358, 407, 1503, 1561, 1849, 2162, 2358
BsaWI WCCGGW 1 cut(s) 1243
Bsc4I CCNNNNNNNGG 6 cut(s) 332, 473, 665, 1192, 1856, 2320
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 1243
Bse21I CCTNAGG 1 cut(s) 468
Bse3DI GCAATG 2 cut(s) 270, 2210
Bse8I GATNNNNATC 1 cut(s) 993
BseAI TCCGGA 1 cut(s) 1243
BseBI CCWGG 5 cut(s) 359, 660, 1562, 1851, 1911
BseDI CCNNGG 7 cut(s) 358, 407, 1503, 1561, 1849, 2162, 2358
BseGI GGATG 5 cut(s) 209, 243, 1222, 1906, 2038
BseJI GATNNNNATC 1 cut(s) 993
BseLI CCNNNNNNNGG 6 cut(s) 332, 473, 665, 1192, 1856, 2320
BseMI GCAATG 2 cut(s) 270, 2210
BseMII CTCAG 7 cut(s) 95, 482, 1056, 1089, 1965, 2004, 2418
BseNI ACTGG 1 cut(s) 1243
BseRI GAGGAG 2 cut(s) 1017, 2235
BseSI GKGCMC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 1854
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 1355
BshFI GGCC 2 cut(s) 458, 898
BshNI GGYRCC 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 1355
BsiSI CCGG 6 cut(s) 216, 375, 407, 1244, 1503, 1999
BslFI GGGAC 1 cut(s) 2034
BslI CCNNNNNNNGG 6 cut(s) 332, 473, 665, 1192, 1856, 2320
BsmAI GTCTC 4 cut(s) 258, 966, 1716, 2427
BsmBI CGTCTC 1 cut(s) 2427
BsmFI GGGAC 1 cut(s) 2034
BsmI GAATGC 2 cut(s) 93, 748
BsnI GGCC 2 cut(s) 458, 898
Bsp1286I GDGCHC 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 1243
Bsp1720I GCTNAGC 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 2162
BspACI CCGC 5 cut(s) 91, 530, 1019, 1368, 1758
BspANI GGCC 2 cut(s) 458, 898
BspCNI CTCAG 7 cut(s) 94, 481, 1055, 1088, 1966, 2003, 2419
BspEI TCCGGA 1 cut(s) 1243
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 913
BspLI GGNNCC 3 cut(s) 316, 544, 1915
BspMAI CTGCAG 3 cut(s) 541, 1546, 1730
BspMI ACCTGC 2 cut(s) 530, 1549
BspPI GGATC 5 cut(s) 267, 716, 1105, 1908, 1921
BspQI GCTCTTC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 314
BspTI CTTAAG 1 cut(s) 611
BsrDI GCAATG 2 cut(s) 270, 2210
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 1243
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 7 cut(s) 358, 407, 1503, 1561, 1849, 2162, 2358
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 1797
BssT1I CCWWGG 2 cut(s) 2162, 2358
Bst2BI CACGAG 1 cut(s) 1797
Bst2UI CCWGG 5 cut(s) 359, 660, 1562, 1851, 1911
Bst4CI ACNGT 4 cut(s) 742, 1398, 1944, 2068
Bst6I CTCTTC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 1598
BstC8I GCNNGC 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 2162
BstENI CCTNNNNNAGG 1 cut(s) 1190
BstF5I GGATG 5 cut(s) 209, 243, 1222, 1906, 2038
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 2 cut(s) 365, 958
BstMAI GTCTC 4 cut(s) 258, 966, 1716, 2427
BstMCI CGRYCG 1 cut(s) 1355
BstNI CCWGG 5 cut(s) 359, 660, 1562, 1851, 1911
BstNSI RCATGY 1 cut(s) 2101
BstSCI CCNGG 9 cut(s) 215, 357, 406, 658, 1502, 1560, 1849, 1909, 1998
BstSFI CTRYAG 6 cut(s) 492, 504, 537, 1476, 1542, 1726
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 365
BstX2I RGATCY 3 cut(s) 721, 983, 1913
BstXI CCANNNNNNTGG 1 cut(s) 1587
BstYI RGATCY 3 cut(s) 721, 983, 1913
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 2 cut(s) 458, 898
BtgI CCRYGG 1 cut(s) 2162
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 5 cut(s) 209, 243, 1222, 1906, 2038
BtsI GCAGTG 1 cut(s) 1901
BtsIMutI CAGTG 5 cut(s) 1050, 1105, 1901, 1998, 2064
BveI ACCTGC 2 cut(s) 530, 1549
Cac8I GCNNGC 1 cut(s) 222
CciI TCATGA 1 cut(s) 913
CfoI GCGC 2 cut(s) 365, 958
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 3 cut(s) 1241, 1940, 1996
CseI GACGC 1 cut(s) 354
Csp6I GTAC 3 cut(s) 315, 488, 2495
CviQI GTAC 3 cut(s) 315, 488, 2495
DraIII CACNNNGTG 2 cut(s) 226, 2029
DrdI GACNNNNNNGTC 2 cut(s) 110, 1994
DseDI GACNNNNNNGTC 2 cut(s) 110, 1994
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 2162, 2358
Eco147I AGGCCT 1 cut(s) 458
Eco47I GGWCC 3 cut(s) 1241, 1940, 1996
Eco81I CCTNAGG 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 1190
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 5 cut(s) 357, 658, 1560, 1849, 1909
EcoT14I CCWWGG 2 cut(s) 2162, 2358
EcoT22I ATGCAT 1 cut(s) 2521
ErhI CCWWGG 2 cut(s) 2162, 2358
Esp3I CGTCTC 1 cut(s) 2427
FalI AAGNNNNNCTT 4 cut(s) 800, 832, 1647, 1679
FaqI GGGAC 1 cut(s) 2034
FauNDI CATATG 2 cut(s) 697, 1632
FbaI TGATCA 3 cut(s) 64, 988, 1551
FblI GTMKAC 1 cut(s) 102
FokI GGATG 5 cut(s) 216, 230, 1229, 1893, 2045
FspBI CTAG 8 cut(s) 563, 1163, 1386, 1514, 1571, 1818, 1874, 2277
GlaI GCGC 2 cut(s) 364, 957
GsuI CTGGAG 1 cut(s) 1544
HaeIII GGCC 2 cut(s) 458, 898
HapII CCGG 6 cut(s) 216, 375, 407, 1244, 1503, 1999
HgaI GACGC 1 cut(s) 354
HhaI GCGC 2 cut(s) 365, 958
Hin1I GRCGYC 1 cut(s) 111
Hin6I GCGC 2 cut(s) 363, 956
HinP1I GCGC 2 cut(s) 363, 956
HincII GTYRAC 3 cut(s) 369, 1932, 1947
HindII GTYRAC 3 cut(s) 369, 1932, 1947
HpaII CCGG 6 cut(s) 216, 375, 407, 1244, 1503, 1999
HphI GGTGA 5 cut(s) 80, 302, 335, 599, 2500
Hpy166II GTNNAC 6 cut(s) 103, 369, 805, 1472, 1932, 1947
Hpy188I TCNGA 5 cut(s) 988, 1078, 1721, 1777, 1975
Hpy8I GTNNAC 6 cut(s) 103, 369, 805, 1472, 1932, 1947
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 6 cut(s) 287, 328, 332, 1225, 1529, 2485
HpyCH4III ACNGT 4 cut(s) 742, 1398, 1944, 2068
HpyCH4IV ACGT 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
HspAI GCGC 2 cut(s) 363, 956
Kpn2I TCCGGA 1 cut(s) 1243
KpnI GGTACC 1 cut(s) 318
Ksp22I TGATCA 3 cut(s) 64, 988, 1551
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 207, 1639
LweI GCATC 8 cut(s) 202, 309, 517, 672, 772, 1296, 1915, 2445
MaeI CTAG 8 cut(s) 563, 1163, 1386, 1514, 1571, 1818, 1874, 2277
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 9 cut(s) 971, 1048, 1220, 1289, 1379, 1573, 1702, 1799, 2353
MboII GAAGA 4 cut(s) 128, 1144, 1315, 1833
MfeI CAATTG 1 cut(s) 2384
MflI RGATCY 3 cut(s) 721, 983, 1913
MhlI GDGCHC 1 cut(s) 222
MlyI GAGTC 4 cut(s) 680, 1766, 1982, 2236
MmeI TCCRAC 1 cut(s) 1663
Mph1103I ATGCAT 1 cut(s) 2521
MroI TCCGGA 1 cut(s) 1243
MroXI GAANNNNTTC 4 cut(s) 1319, 1965, 2060, 2377
MseI TTAA 4 cut(s) 192, 612, 2094, 2400
MslI CAYNNNNRTG 7 cut(s) 60, 66, 551, 633, 1043, 1493, 2153
MspA1I CMGCKG 1 cut(s) 1758
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 6 cut(s) 216, 375, 407, 1244, 1503, 1999
MspR9I CCNGG 9 cut(s) 217, 359, 408, 660, 1504, 1562, 1851, 1911, 2000
MunI CAATTG 1 cut(s) 2384
Mva1269I GAATGC 2 cut(s) 93, 748
MvaI CCWGG 5 cut(s) 359, 660, 1562, 1851, 1911
MvnI CGCG 1 cut(s) 365
NciI CCSGG 4 cut(s) 217, 408, 1504, 2000
NcoI CCATGG 1 cut(s) 2162
NdeI CATATG 2 cut(s) 697, 1632
NlaIV GGNNCC 3 cut(s) 316, 544, 1915
NmuCI GTSAC 4 cut(s) 1289, 1702, 1799, 2353
NsiI ATGCAT 1 cut(s) 2521
NspI RCATGY 1 cut(s) 2101
PagI TCATGA 1 cut(s) 913
PceI AGGCCT 1 cut(s) 458
PciI ACATGT 1 cut(s) 2097
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 2 cut(s) 93, 748
PdmI GAANNNNTTC 4 cut(s) 1319, 1965, 2060, 2377
PfeI GAWTC 6 cut(s) 796, 935, 1071, 2135, 2158, 2438
PflMI CCANNNNNTGG 2 cut(s) 332, 2320
PfoI TCCNGGA 2 cut(s) 1909, 1998
PleI GAGTC 4 cut(s) 680, 1766, 1982, 2236
PpsI GAGTC 4 cut(s) 680, 1766, 1982, 2236
PscI ACATGT 1 cut(s) 2097
PsiI TTATAA 1 cut(s) 1346
Psp6I CCWGG 5 cut(s) 357, 658, 1560, 1849, 1909
PspGI CCWGG 5 cut(s) 357, 658, 1560, 1849, 1909
PspN4I GGNNCC 3 cut(s) 316, 544, 1915
PspPI GGNCC 3 cut(s) 1241, 1940, 1996
PstI CTGCAG 3 cut(s) 541, 1546, 1730
PsuI RGATCY 3 cut(s) 721, 983, 1913
RsaI GTAC 3 cut(s) 316, 489, 2496
RsaNI GTAC 3 cut(s) 315, 488, 2495
RseI CAYNNNNRTG 7 cut(s) 60, 66, 551, 633, 1043, 1493, 2153
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 4 cut(s) 192, 612, 2094, 2400
Sau96I GGNCC 3 cut(s) 1241, 1940, 1996
SchI GAGTC 4 cut(s) 680, 1766, 1982, 2236
ScrFI CCNGG 9 cut(s) 217, 359, 408, 660, 1504, 1562, 1851, 1911, 2000
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 8 cut(s) 202, 309, 517, 672, 772, 1296, 1915, 2445
SfcI CTRYAG 6 cut(s) 492, 504, 537, 1476, 1542, 1726
SinI GGWCC 3 cut(s) 1241, 1940, 1996
SmiMI CAYNNNNRTG 7 cut(s) 60, 66, 551, 633, 1043, 1493, 2153
SmlI CTYRAG 3 cut(s) 611, 2247, 2414
SmoI CTYRAG 3 cut(s) 611, 2247, 2414
SpeI ACTAGT 1 cut(s) 1570
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 5 cut(s) 91, 530, 1019, 1368, 1758
SspI AATATT 2 cut(s) 622, 923
SspMI CTAG 8 cut(s) 563, 1163, 1386, 1514, 1571, 1818, 1874, 2277
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 9 cut(s) 215, 357, 406, 658, 1502, 1560, 1849, 1909, 1998
StyI CCWWGG 2 cut(s) 2162, 2358
TaaI ACNGT 4 cut(s) 742, 1398, 1944, 2068
TaiI ACGT 1 cut(s) 114
TaqI TCGA 7 cut(s) 72, 114, 171, 262, 1351, 1463, 2133
TaqII GACCGA 1 cut(s) 1369
TfiI GAWTC 6 cut(s) 796, 935, 1071, 2135, 2158, 2438
Tru1I TTAA 4 cut(s) 192, 612, 2094, 2400
Tru9I TTAA 4 cut(s) 192, 612, 2094, 2400
TscAI CASTG 5 cut(s) 1050, 1105, 1908, 1998, 2071
TseFI GTSAC 4 cut(s) 1289, 1702, 1799, 2353
Tsp45I GTSAC 4 cut(s) 1289, 1702, 1799, 2353
TspDTI ATGAA 8 cut(s) 536, 902, 1049, 1431, 1686, 2049, 2094, 2541
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 5 cut(s) 1050, 1105, 1908, 1998, 2071
Van91I CCANNNNNTGG 2 cut(s) 332, 2320
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 3 cut(s) 1241, 1940, 1996
XagI CCTNNNNNAGG 1 cut(s) 1190
XapI RAATTY 6 cut(s) 167, 577, 811, 1534, 1611, 1951
XceI RCATGY 1 cut(s) 2101
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 4 cut(s) 1319, 1965, 2060, 2377
XspI CTAG 8 cut(s) 563, 1163, 1386, 1514, 1571, 1818, 1874, 2277
ZraI GACGTC 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 2521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.