Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015288

Physical Location & Seq

Genomic Coordinates Reverse (-)

6172957 .. 6176424

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGTCAGAACCTCTTCTCTCACACCCAGAAGCAAATTCTTCGTGAGAAAGCACAGAAAATGGCCAGTCTCACCCTACAACACCAAATGGCACAAACTCTTCAACCAACACCAAGCCTTACAAACCCTCAAACACTCCCCACTAAACCCACCCCAAACTCTTCTCTCCACACTCATCCACTCCTTCAACACTTTCAACTGTGACCCAACTCCTGAAGCTTACAACTTTGTCCTAAAAACCCTCTTTAAAACCTCCCAACTCTCCCACATCCCATCTGTTCTTGACCGCCTTGAATCCATCGAGAAATTCCACCCACCCGAATCCATCTTCGCCAACCTGATCAGATTCTACGGCAGTGCCAATCGAGTTGAGGATGCCATTGATGTTTTCTGCAGGATACCCAAGTTTAGATGTGACCCTTCTGCGGTCTCACTCAACTCTCTGCTATATGTGCTTTGTGGAAGTAGTGAAGGTCTTAAAATGGTGCCCCAGGTTTTGATGAACAGCAGAGCAATGGGAATTAGGCTTGAAGAGTCGAGCTTTCGGATTTTGATCTCTGCATTGTGTAGAATTGGAAGTGTTGGGTATGCTATTGAGATAATGAAATGCATGATTAGTAATGGGTATGATTTGGATGTGAAGATTTGCTCTTTGGTATTGTCATCATTGTGTGAGCAAAAAGGTGTAGGTGGTTTGGAGGTTGTGGGTTTTGTGGAGGAGATGAAGAAGGTTGGGTTTTGTCCTGGGATGTTGGACTATTCCAATGTGATTAGGTGTTTGGTGAAACAGGGGAAGGGTTTGGATGCTTTGAGAGTTTTGTGTAAGATGAAAGTCGAGGGGATGAAGCCTGATATTGTGTGTTATACCATGGTTTTGTATGGTGTTATCGCAAATGGGGATTACAAGAATGCAGATAAGGTGTTTGATGAGTTGCTTGTGTTGGGTTTGGTTCCTGATGTTTATACTTACAATGTGTATATAAATGGGTTGTGTAACCAGAATAATGTGGAAGCTGGGATAAAGATGATTACTTGTATGGACGAGTTGGGGTGTAGGCCGAATTTGATTACTTATAACTTGTTGTTGAAGGCATTGTGTAAGAATGAGGAACTGAGTCGGGCAAGGGAGCTTGTGAGTGAGATGACCTTGAATGGTGTTGGGGTAAACTTGCAGACACATATAATTATGTTGGATGGTCTGTTTTGTAAAGGTGATGTTGATGAAGCCTGTATTTTTATGGAGGAAATGTTGGATAAGTTTATGTGTCGACGTTGTTCGGCATATGATGATGTAATCTATGGGTTGTGCCAGAGGGGTTTGGTTTGTAAAGCGATGGATTTGCTGCTGAAAATGGTTGACAAGAATGTTGTGCCTGGGGCAAGAGCTTGGGAAGCACTACTCCTTAGCTCAGGAACTGGACCTTGCTTAGTAGAGAATACTTGGACCAATTTGGTGAACCCAATGGAAGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 dsrm

Protein Analysis

492

Amino Acids

55.07

Weight (kDa)

7.7

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	238 - 292	5.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	253 - 294	1.8e-07	PPR repeat family
PPR_3	PF13812	271 - 328	1.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	283 - 332	1.3e-12	PPR repeat family
PPR_3	PF13812	306 - 367	4.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	315 - 346	4.6e-06	PPR repeat
PPR_2	PF13041	318 - 367	2e-14	PPR repeat family
PPR_1	PF12854	350 - 382	2.4e-09	PPR repeat
PPR_2	PF13041	353 - 400	3e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38420
fragaria_vesca	FvH4_6g10340
malus_domestica	MD04G1169100.v1.1 MD12G1182800.v1.1
prunus_persica	Prupe.6G287300_v2.0.a1
pyrus_communis	pycom04g14980 pycom12g17160
rosa_laevigata	RLG00000024949
rosa_multiflora	Rmu_sc0001521.1_g000049
rosa_roxburghii	Rroxscaffold_6G00418830
rosa_rugosa	Rorug03G0048500 Rorug03G0048700
rosa_samantha	Rh3BG110100 Rh3CG111600 Rh3DG111700
rosa_wichuraiana	Rw3G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1074
AccB1I	GGYRCC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	1267
AciI	CCGC	2 cut(s)	286, 425
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	3 cut(s)	35, 305, 1060
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	7 cut(s)	103, 187, 196, 293, 530, 1087, 1150
AjnI	CCWGG	3 cut(s)	489, 742, 1372
AluBI	AGCT	6 cut(s)	218, 540, 1013, 1129, 1385, 1407
AluI	AGCT	6 cut(s)	218, 540, 1013, 1129, 1385, 1407
Alw26I	GTCTC	2 cut(s)	73, 433
AlwNI	CAGNNNCTG	1 cut(s)	1415
AoxI	GGCC	2 cut(s)	62, 1055
ApeKI	GCWGC	1 cut(s)	1342
ApoI	RAATTY	3 cut(s)	35, 305, 1060
Asp700I	GAANNNNTTC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	1418, 1443
AsuHPI	GGTGA	4 cut(s)	63, 793, 1223, 1465
AvaII	GGWCC	2 cut(s)	1418, 1443
BaeGI	GKGCMC	1 cut(s)	489
BaeI	ACNNNNGTAYC	2 cut(s)	389, 422
BalI	TGGCCA	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	1329
BccI	CCATC	5 cut(s)	280, 305, 332, 1187, 1327
BceAI	ACGGC	1 cut(s)	367
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 1321, 1355
BciT130I	CCWGG	3 cut(s)	491, 744, 1374
BciVI	GTATCC	1 cut(s)	390
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	73, 433
BfmI	CTRYAG	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	1 cut(s)	1343
BlsI	GCNGC	1 cut(s)	1344
Bme1390I	CCNGG	3 cut(s)	491, 744, 1374
Bme18I	GGWCC	2 cut(s)	1418, 1443
BmgT120I	GGNCC	2 cut(s)	1418, 1443
BmiI	GGNNCC	2 cut(s)	486, 951
BmrFI	CCNGG	3 cut(s)	491, 744, 1374
BmsI	GCATC	2 cut(s)	364, 793
Bpu10I	CCTNAGC	2 cut(s)	1403, 1408
BsaBI	GATNNNNATC	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	4 cut(s)	489, 743, 867, 1373
BsaXI	ACNNNNNCTCC	2 cut(s)	1232, 1262
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	2 cut(s)	65, 1420
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	551
BseBI	CCWGG	3 cut(s)	491, 744, 1374
BseDI	CCNNGG	4 cut(s)	489, 743, 867, 1373
BseGI	GGATG	8 cut(s)	174, 267, 379, 640, 753, 808, 846, 1198
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	1103, 1422
BseNI	ACTGG	2 cut(s)	65, 1420
BseRI	GAGGAG	1 cut(s)	731
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	1329
BseYI	CCCAGC	1 cut(s)	1013
BshFI	GGCC	2 cut(s)	64, 1057
BshNI	GGYRCC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	2 cut(s)	73, 433
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	2 cut(s)	64, 1057
Bso31I	GGTCTC	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	339, 552
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	2 cut(s)	286, 425
BspANI	GGCC	2 cut(s)	64, 1057
BspCNI	CTCAG	2 cut(s)	1104, 1421
BspLI	GGNNCC	2 cut(s)	486, 951
BspMAI	CTGCAG	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	65, 1420
BssECI	CCNNGG	4 cut(s)	489, 743, 867, 1373
BssMI	GATC	2 cut(s)	339, 552
BssT1I	CCWWGG	1 cut(s)	867
Bst2UI	CCWGG	3 cut(s)	491, 744, 1374
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	4 cut(s)	19, 104, 165, 525
BstDEI	CTNAG	4 cut(s)	1112, 1403, 1408, 1426
BstDSI	CCRYGG	1 cut(s)	867
BstF5I	GGATG	8 cut(s)	174, 267, 379, 640, 753, 808, 846, 1198
BstKTI	GATC	2 cut(s)	342, 555
BstMAI	GTCTC	2 cut(s)	73, 433
BstMBI	GATC	2 cut(s)	339, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 1391
BstNI	CCWGG	3 cut(s)	491, 744, 1374
BstSCI	CCNGG	3 cut(s)	489, 742, 1372
BstSFI	CTRYAG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	1329
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	64, 1057
BtgI	CCRYGG	1 cut(s)	867
BtgZI	GCGATG	1 cut(s)	1346
BtsCI	GGATG	8 cut(s)	174, 267, 379, 640, 753, 808, 846, 1198
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	1415
Cfr13I	GGNCC	2 cut(s)	1418, 1443
CviAII	CATG	2 cut(s)	610, 868
DdeI	CTNAG	4 cut(s)	1112, 1403, 1408, 1426
DpnI	GATC	2 cut(s)	341, 554
DpnII	GATC	2 cut(s)	339, 552
DraI	TTTAAA	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	4 cut(s)	19, 104, 165, 525
EarI	CTCTTC	4 cut(s)	19, 104, 165, 525
Eco130I	CCWWGG	1 cut(s)	867
Eco31I	GGTCTC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	1418, 1443
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	3 cut(s)	489, 742, 1372
EcoT14I	CCWWGG	1 cut(s)	867
EcoT22I	ATGCAT	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	2 cut(s)	613, 871
FatI	CATG	2 cut(s)	609, 867
FauNDI	CATATG	1 cut(s)	1282
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	1267
Fnu4HI	GCNGC	1 cut(s)	1343
FokI	GGATG	8 cut(s)	161, 254, 386, 647, 760, 815, 853, 1205
Fsp4HI	GCNGC	1 cut(s)	1343
GluI	GCNGC	1 cut(s)	1343
GsaI	CCCAGC	1 cut(s)	1017
HaeIII	GGCC	2 cut(s)	64, 1057
Hin1II	CATG	2 cut(s)	613, 871
HincII	GTYRAC	2 cut(s)	1268, 1357
HindII	GTYRAC	2 cut(s)	1268, 1357
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	5 cut(s)	293, 320, 345, 533, 1114
HphI	GGTGA	4 cut(s)	63, 793, 1223, 1465
Hpy166II	GTNNAC	4 cut(s)	1165, 1268, 1357, 1456
Hpy188I	TCNGA	3 cut(s)	8, 344, 546
Hpy188III	TCNNGA	6 cut(s)	43, 212, 281, 301, 953, 1410
Hpy8I	GTNNAC	4 cut(s)	1165, 1268, 1357, 1456
Hpy99I	CGWCG	1 cut(s)	1272
HpyAV	CCTTC	6 cut(s)	193, 429, 464, 721, 787, 1081
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	1270
HpyCH4V	TGCA	5 cut(s)	393, 560, 609, 911, 1171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 1391
HpyF3I	CTNAG	4 cut(s)	1112, 1403, 1408, 1426
HpySE526I	ACGT	1 cut(s)	1270
Hsp92II	CATG	2 cut(s)	613, 871
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	339, 552
LmnI	GCTCC	1 cut(s)	1126
Lsp1109I	GCAGC	1 cut(s)	1329
LweI	GCATC	2 cut(s)	364, 793
MaeII	ACGT	1 cut(s)	1270
MaeIII	GTNAC	3 cut(s)	200, 413, 992
MalI	GATC	2 cut(s)	341, 554
MboI	GATC	2 cut(s)	339, 552
MboII	GAAGA	8 cut(s)	6, 31, 91, 152, 319, 542, 652, 736
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	64
MluCI	AATT	7 cut(s)	35, 305, 519, 570, 1060, 1182, 1447
MluNI	TGGCCA	1 cut(s)	64
MlyI	GAGTC	2 cut(s)	542, 1123
MmeI	TCCRAC	3 cut(s)	732, 1170, 1230
Mox20I	TGGCCA	1 cut(s)	64
Mph1103I	ATGCAT	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	64
MseI	TTAA	2 cut(s)	246, 477
MslI	CAYNNNNRTG	1 cut(s)	667
Msp20I	TGGCCA	1 cut(s)	64
MspR9I	CCNGG	3 cut(s)	491, 744, 1374
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	3 cut(s)	491, 744, 1374
MwoI	GCNNNNNNNGC	2 cut(s)	451, 1391
NcoI	CCATGG	1 cut(s)	867
NdeI	CATATG	1 cut(s)	1282
NdeII	GATC	2 cut(s)	339, 552
NlaIII	CATG	2 cut(s)	613, 871
NlaIV	GGNNCC	2 cut(s)	486, 951
NmuCI	GTSAC	2 cut(s)	200, 413
NsiI	ATGCAT	1 cut(s)	611
PctI	GAATGC	1 cut(s)	913
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	3 cut(s)	293, 320, 345
PkrI	GCNGC	1 cut(s)	1344
PleI	GAGTC	2 cut(s)	541, 1122
PpsI	GAGTC	2 cut(s)	541, 1122
PsiI	TTATAA	1 cut(s)	1074
Psp6I	CCWGG	3 cut(s)	489, 742, 1372
PspFI	CCCAGC	1 cut(s)	1013
PspGI	CCWGG	3 cut(s)	489, 742, 1372
PspN4I	GGNNCC	2 cut(s)	486, 951
PspPI	GGNCC	2 cut(s)	1418, 1443
PstI	CTGCAG	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	1415
RseI	CAYNNNNRTG	1 cut(s)	667
SalI	GTCGAC	1 cut(s)	1266
SaqAI	TTAA	2 cut(s)	246, 477
SatI	GCNGC	1 cut(s)	1343
Sau3AI	GATC	2 cut(s)	339, 552
Sau96I	GGNCC	2 cut(s)	1418, 1443
SchI	GAGTC	2 cut(s)	542, 1123
ScrFI	CCNGG	3 cut(s)	491, 744, 1374
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	364, 793
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	2 cut(s)	1418, 1443
SmiMI	CAYNNNNRTG	1 cut(s)	667
Sse9I	AATT	7 cut(s)	35, 305, 519, 570, 1060, 1182, 1447
SsiI	CCGC	2 cut(s)	286, 425
StyD4I	CCNGG	3 cut(s)	489, 742, 1372
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	1273
TaqI	TCGA	6 cut(s)	300, 364, 536, 834, 1267, 1470
TasI	AATT	7 cut(s)	35, 305, 519, 570, 1060, 1182, 1447
TfiI	GAWTC	3 cut(s)	293, 320, 345
Tru1I	TTAA	2 cut(s)	246, 477
Tru9I	TTAA	2 cut(s)	246, 477
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	200, 413
TseI	GCWGC	1 cut(s)	1342
Tsp45I	GTSAC	2 cut(s)	200, 413
TspDTI	ATGAA	6 cut(s)	515, 617, 737, 842, 857, 1236
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	1418, 1443
XapI	RAATTY	3 cut(s)	35, 305, 1060
XmiI	GTMKAC	1 cut(s)	1267
XmnI	GAANNNNTTC	1 cut(s)	13
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.