Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011422

Physical Location & Seq

Genomic Coordinates Forward (+)

16134543 .. 16136695

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGAGTGATTTGATTGATTTGTTCGAGGGAGCTAAGAAGGCAGCCGATGCGGCGGCTCTTGACGGTGTTACCTCTTCAGGTCCTGAGGTTTCTCAATGTATCGATGCCCTTAAACAGCTCAAGAAGTTTCCTGTCACATACGATACCCTCGTTGCGACTCAGGTGGGAAAGAAGCTGAGGTCTCTTGCAAAACATCCTGTTGAAGATATCAAAAGCGTAGCTACTGATCTGCTTGAGATATGGAAGAAAGTTGTCATTGAAGAGACAGCCAAAGCTAAGAAAACCGAAGGCACTAACGGTTGTAAAGAGGCTAAGGTGAATAAGATGGATGTTGAGAAGCCTTCAAATCCTGCTCCTGTTAAAGTTCAGAAACTTCAGAGGGGTGATTCGGCTAAGAGTATCAAGGTTGAGAGAAAGGAACCTGACAATAAAGTTGTTACCGGTGTCAAGATAGAGAGAAAGGTACCTGACATCAAAGTCACCAATGGAACCAAGATAGATTATCGTGGTCAGGCTGTGAAAGATGAAAAGGTCTCAAAGGACAACCAATCAAGTATGAAAGCTCCAGCTAAAGCAGCTAATGCTCCTCCAAAACTAACTGCAATGCTCAAATGCAATGATCCTGTGCGTGACAAAATCCGTGAGTTGCTTGTGGAGGCGTTGTGCAGGGTTGCTGGAGAAGCTGATGACTATGAGAGAGAGTCAGTAAATGCTAGTGATCCTTTACGTGTTGCTGTCTCAGTGGAATCACTGATGTTTGAGAAATTGGGTCGCTCAACTGGAGCTCAGAAGCTTAAGTACAGATCTATAATGTTCAACCTGAGGGATAGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACTGGGGAGATTTCACCAGAGAAACTCATAACATTGTCTGCCGAAGATATGGCAAGTGACAAGAGGAAACAAGAGAACAACCAGATCAAAGAGAAAGCCCTGTTTGATTGTGAGCGTGGTCTTGCTGCAAAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAGCGCAAATGCACCTACTATCAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACTTATGTTACATGTGTTAACTGTGACAACCACTGGAAGTTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0033993 GO:0034243 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090351 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26 TFIIS_C TFIIS_M

Protein Analysis

378

Amino Acids

41.98

Weight (kDa)

9.08

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	36 - 86	6.8e-12	TFIIS helical bundle-like domain
TFIIS_M	PF07500	207 - 325	2.3e-35	Transcription factor S-II (TFIIS), central domain
Zn_ribbon_TFIIS	PF01096	338 - 376	6.4e-18	Transcription factor S-II (TFIIS)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38560
fragaria_vesca	FvH4_7g26060 FvH4_7g26060 FvH4_7g26060
malus_domestica	MD01G1169100.v1.1 MD07G1235000.v1.1
prunus_persica	Prupe.2G265300_v2.0.a1
pyrus_communis	pycom01g18180 pycom07g21250
rosa_chinensis	RchiOBHm_Chr1g0372471
rosa_laevigata	RLG00000026896
rosa_multiflora	Rmu_sc0005410.1_g000001 Rmu_sc0011709.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284880
rosa_rugosa	Rorug01G0372200
rosa_samantha	Rh1AG380700 Rh1BG344300 Rh1CG357700 Rh1DG375500
rosa_wichuraiana	Rw1G033490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	466
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	4 cut(s)	53, 56, 1020, 1024
AclWI	GGATC	2 cut(s)	617, 716
AcuI	CTGAAG	2 cut(s)	63, 362
AfaI	GTAC	2 cut(s)	468, 803
AflII	CTTAAG	2 cut(s)	797, 847
AflIII	ACRYGT	2 cut(s)	730, 1100
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	206, 263, 348, 820, 1015
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	4 cut(s)	189, 260, 541, 745
AlwI	GGATC	2 cut(s)	617, 716
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	44, 578, 989
AsiGI	ACCGGT	1 cut(s)	443
Asp718I	GGTACC	1 cut(s)	466
AspLEI	GCGC	1 cut(s)	1038
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	4 cut(s)	331, 398, 475, 870
AvaII	GGWCC	1 cut(s)	83
AxyI	CCTNAGG	2 cut(s)	87, 824
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	790
BarI	GAAGNNNNNNTAC	2 cut(s)	785, 817
Bbv12I	GWGCWC	1 cut(s)	790
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	56, 590, 976
BccI	CCATC	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	4 cut(s)	189, 260, 541, 745
BfaI	CTAG	1 cut(s)	717
BfrI	CTTAAG	2 cut(s)	797, 847
BglI	GCCNNNNNGGC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	806
BisI	GCNGC	5 cut(s)	45, 54, 57, 579, 990
BlsI	GCNGC	5 cut(s)	46, 55, 58, 580, 991
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	3 cut(s)	423, 468, 493
BmrFI	CCNGG	1 cut(s)	842
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	4 cut(s)	40, 97, 1007, 1047
BmuI	ACTGGG	1 cut(s)	876
BpmI	CTGGAG	3 cut(s)	552, 699, 804
Bpu10I	CCTNAGC	2 cut(s)	179, 315
BpuEI	CTTGAG	2 cut(s)	107, 257
BpuMI	CCSGG	1 cut(s)	842
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	731
BsaI	GGTCTC	2 cut(s)	189, 541
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	4 cut(s)	787, 871, 1009, 1127
Bse21I	CCTNAGG	2 cut(s)	87, 824
Bse3DI	GCAATG	2 cut(s)	612, 625
BseCI	ATCGAT	1 cut(s)	105
BseGI	GGATG	2 cut(s)	196, 337
BseMI	GCAATG	2 cut(s)	612, 625
BseMII	CTCAG	6 cut(s)	78, 170, 176, 756, 803, 815
BseNI	ACTGG	4 cut(s)	787, 871, 1009, 1127
BseRI	GAGGAG	1 cut(s)	579
BseXI	GCAGC	3 cut(s)	56, 590, 976
BsgI	GTGCAG	1 cut(s)	688
BshNI	GGYRCC	1 cut(s)	466
BshTI	ACCGGT	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	790
BsiSI	CCGG	2 cut(s)	444, 842
BsmAI	GTCTC	4 cut(s)	189, 260, 541, 745
Bso31I	GGTCTC	2 cut(s)	189, 541
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp143I	GATC	5 cut(s)	229, 622, 721, 806, 948
BspACI	CCGC	4 cut(s)	53, 56, 1020, 1024
BspCNI	CTCAG	6 cut(s)	79, 171, 175, 755, 802, 816
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	423, 468, 493
BspPI	GGATC	2 cut(s)	617, 716
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	2 cut(s)	797, 847
BspTNI	GGTCTC	2 cut(s)	189, 541
BsrDI	GCAATG	2 cut(s)	612, 625
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	4 cut(s)	787, 871, 1009, 1127
BssAI	RCCGGY	1 cut(s)	443
BssMI	GATC	5 cut(s)	229, 622, 721, 806, 948
Bst4CI	ACNGT	3 cut(s)	68, 302, 1112
Bst6I	CTCTTC	2 cut(s)	82, 258
BstAFI	CTTAAG	2 cut(s)	797, 847
BstAPI	GCANNNNNTGC	2 cut(s)	50, 584
BstBAI	YACGTR	1 cut(s)	731
BstC8I	GCNNGC	1 cut(s)	1022
BstF5I	GGATG	2 cut(s)	196, 337
BstHHI	GCGC	1 cut(s)	1038
BstKTI	GATC	5 cut(s)	232, 625, 724, 809, 951
BstMAI	GTCTC	4 cut(s)	189, 260, 541, 745
BstMBI	GATC	5 cut(s)	229, 622, 721, 806, 948
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 50, 53, 578, 584, 683, 995
BstNSI	RCATGY	1 cut(s)	1104
BstSCI	CCNGG	1 cut(s)	840
BstV1I	GCAGC	3 cut(s)	56, 590, 976
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
Bsu15I	ATCGAT	1 cut(s)	105
Bsu36I	CCTNAGG	2 cut(s)	87, 824
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	196, 337
BtsIMutI	CAGTG	4 cut(s)	750, 752, 864, 1120
Cac8I	GCNNGC	1 cut(s)	1022
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	1038
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	467, 802
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	1 cut(s)	1101
CviQI	GTAC	2 cut(s)	467, 802
DpnI	GATC	5 cut(s)	231, 624, 723, 808, 950
DpnII	GATC	5 cut(s)	229, 622, 721, 806, 948
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	2 cut(s)	82, 258
EarI	CTCTTC	2 cut(s)	82, 258
Ecl136II	GAGCTC	1 cut(s)	788
Eco24I	GRGCYC	1 cut(s)	790
Eco31I	GGTCTC	2 cut(s)	189, 541
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	788
Eco57I	CTGAAG	2 cut(s)	63, 362
Eco81I	CCTNAGG	2 cut(s)	87, 824
EcoICRI	GAGCTC	1 cut(s)	788
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRV	GATATC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	790
FaeI	CATG	1 cut(s)	1104
FaiI	YATR	9 cut(s)	142, 244, 560, 696, 812, 893, 914, 1095, 1102
FatI	CATG	1 cut(s)	1100
FauI	CCCGC	1 cut(s)	1013
Fnu4HI	GCNGC	5 cut(s)	45, 54, 57, 579, 990
FokI	GGATG	2 cut(s)	183, 344
FriOI	GRGCYC	1 cut(s)	790
Fsp4HI	GCNGC	5 cut(s)	45, 54, 57, 579, 990
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	1 cut(s)	1037
GluI	GCNGC	5 cut(s)	45, 54, 57, 579, 990
GsuI	CTGGAG	3 cut(s)	552, 699, 804
HapII	CCGG	2 cut(s)	444, 842
HhaI	GCGC	1 cut(s)	1038
Hin1II	CATG	1 cut(s)	1104
Hin6I	GCGC	1 cut(s)	1036
HinP1I	GCGC	1 cut(s)	1036
HincII	GTYRAC	1 cut(s)	1108
HindII	GTYRAC	1 cut(s)	1108
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	4 cut(s)	160, 389, 704, 749
HpaI	GTTAAC	1 cut(s)	1108
HpaII	CCGG	2 cut(s)	444, 842
HphI	GGTGA	4 cut(s)	331, 398, 475, 870
Hpy166II	GTNNAC	1 cut(s)	1108
Hpy188I	TCNGA	4 cut(s)	372, 381, 792, 1056
Hpy188III	TCNNGA	4 cut(s)	62, 86, 124, 451
Hpy8I	GTNNAC	1 cut(s)	1108
HpyAV	CCTTC	4 cut(s)	34, 284, 354, 846
HpyCH4III	ACNGT	3 cut(s)	68, 302, 1112
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	7 cut(s)	191, 605, 618, 669, 992, 1044, 1060
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 50, 53, 578, 584, 683, 995
HpySE526I	ACGT	1 cut(s)	730
Hsp92II	CATG	1 cut(s)	1104
HspAI	GCGC	1 cut(s)	1036
KpnI	GGTACC	1 cut(s)	470
KspAI	GTTAAC	1 cut(s)	1108
Kzo9I	GATC	5 cut(s)	229, 622, 721, 806, 948
LmnI	GCTCC	5 cut(s)	32, 361, 571, 592, 785
Lsp1109I	GCAGC	3 cut(s)	56, 590, 976
LweI	GCATC	4 cut(s)	40, 97, 1007, 1047
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	9 cut(s)	70, 136, 439, 481, 632, 833, 920, 1096, 1112
MalI	GATC	5 cut(s)	231, 624, 723, 808, 950
MboI	GATC	5 cut(s)	229, 622, 721, 806, 948
MboII	GAAGA	5 cut(s)	69, 218, 259, 275, 920
MflI	RGATCY	1 cut(s)	806
MhlI	GDGCHC	1 cut(s)	790
MluCI	AATT	1 cut(s)	767
MlyI	GAGTC	2 cut(s)	154, 713
MseI	TTAA	5 cut(s)	114, 363, 798, 848, 1107
MspCI	CTTAAG	2 cut(s)	797, 847
MspI	CCGG	2 cut(s)	444, 842
MspR9I	CCNGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	7 cut(s)	41, 50, 53, 578, 584, 683, 995
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	5 cut(s)	229, 622, 721, 806, 948
NlaIII	CATG	1 cut(s)	1104
NlaIV	GGNNCC	3 cut(s)	423, 468, 493
NmuCI	GTSAC	5 cut(s)	136, 481, 632, 920, 1112
NspI	RCATGY	1 cut(s)	1104
PciI	ACATGT	1 cut(s)	1100
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	389, 749
PinAI	ACCGGT	1 cut(s)	443
PkrI	GCNGC	5 cut(s)	46, 55, 58, 580, 991
PleI	GAGTC	2 cut(s)	154, 712
PpsI	GAGTC	2 cut(s)	154, 712
Ppu21I	YACGTR	1 cut(s)	731
PpuMI	RGGWCCY	1 cut(s)	83
PscI	ACATGT	1 cut(s)	1100
Psp124BI	GAGCTC	1 cut(s)	790
Psp5II	RGGWCCY	1 cut(s)	83
PspN4I	GGNNCC	3 cut(s)	423, 468, 493
PspPI	GGNCC	1 cut(s)	83
PspPPI	RGGWCCY	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	806
RsaI	GTAC	2 cut(s)	468, 803
RsaNI	GTAC	2 cut(s)	467, 802
SacI	GAGCTC	1 cut(s)	790
SaqAI	TTAA	5 cut(s)	114, 363, 798, 848, 1107
SatI	GCNGC	5 cut(s)	45, 54, 57, 579, 990
Sau3AI	GATC	5 cut(s)	229, 622, 721, 806, 948
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	2 cut(s)	154, 713
ScrFI	CCNGG	1 cut(s)	842
SduI	GDGCHC	1 cut(s)	790
SfaNI	GCATC	4 cut(s)	40, 97, 1007, 1047
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	4 cut(s)	122, 236, 797, 847
SmoI	CTYRAG	4 cut(s)	122, 236, 797, 847
Sse9I	AATT	1 cut(s)	767
SsiI	CCGC	4 cut(s)	53, 56, 1020, 1024
SspMI	CTAG	1 cut(s)	717
SstI	GAGCTC	1 cut(s)	790
StyD4I	CCNGG	1 cut(s)	840
TaaI	ACNGT	3 cut(s)	68, 302, 1112
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	2 cut(s)	27, 105
TasI	AATT	1 cut(s)	767
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	2 cut(s)	56, 59
TfiI	GAWTC	2 cut(s)	389, 749
Tru1I	TTAA	5 cut(s)	114, 363, 798, 848, 1107
Tru9I	TTAA	5 cut(s)	114, 363, 798, 848, 1107
TscAI	CASTG	4 cut(s)	750, 759, 871, 1127
TseFI	GTSAC	5 cut(s)	136, 481, 632, 920, 1112
TseI	GCWGC	3 cut(s)	44, 578, 989
Tsp45I	GTSAC	5 cut(s)	136, 481, 632, 920, 1112
TspDTI	ATGAA	2 cut(s)	543, 575
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	4 cut(s)	750, 759, 871, 1127
Vha464I	CTTAAG	2 cut(s)	797, 847
VpaK11BI	GGWCC	1 cut(s)	83
XceI	RCATGY	1 cut(s)	1104
XspI	CTAG	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.