MD01G1169100.v1.1

Transcription elongation factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
27305320 .. 27307595
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1169100.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGGAGAAGGATCTTCTGGAGCTGTTCGACGCCGTGAAGAAATCGGCGGACGCCGCCACATCTTGCGACGGAGGAGCCGAGGAAAGCGAATGCCTTGAGGCCTTCGAGCAGCTCAATAATTTTCCCGTCACTCATCAAATCCTCGTCTCAACCCAAGTTGGAAAGCGTCTTCGACATCTCACAAAACATCCTAGAAAAAAAATACAATCGGTTGCTTCAGGCCTTTTGGAGAAATGGAAAGAGATTGTTATGAGCGAGGTAGGGAAAAATGTGAAAAATGGAAACTTGGAAAGAATAGACTCTCTAAAACGTGATTCTCCACGTGCCGACAGCCCCAGGCCTGAGAAGGTTCAGAAGACATCTGCTGTGAAGGTTGAGAAGGTTTCCAAGGCTGAACCTGTTGAGGTTAAGAAGGTTGATCGTGATGTCAAACCAAGCTCTGAGAAAGCTTATAGTTCCGGAACTGTCAAAGCAGAAAGAAAGGTTCAAAATGTTAATCCTGTCAAGACTGAGAAAGCTGCTTCAGTGGAGAATGTGAAGGATGAAAAGGTAGCCAAAGACGTGAAGAAACCAGCACTGAACTCTTCTGGTCCCCCAAAGTTAACCTCTATGATTAAGTGTAATGATACAGCTCGGGACAAAGTGAGGGTACTGCTGCATGAGGCTTTGTCCAAGGTTTCTGAGGAGGGTGATGAAAGGTTTGTGGATGAGGTGAATGCAGCTGATCCTATTCGAGTTGCTGTCACTGTGGAATCTGTGCTGTTTGAGAACTGGGGTGGTTCCACCGGCTCCCAGAAGGCTAAGTATCGATCTTTGATTTTCAACCTGAAGGACCAAAAGAATCCAGATTTCCGCAGAAAAGTTCTGCTTGGACATATCGAGGCAGAGAGGCTCGTGGACCTGTCAACAGCGGAAATGGCAAGTGATCAGAGGCAAGAGGAGAACCAAAAGCTTGAACAAAAAGCATTGTTTGAGTGCGAGCGTGGAGGTGCACCAAAAGCCACAACCGATCAATTCAAATGCGGTCGATGTGGACAGCGCAAGACCACTTACTACCAAATGCAGACCCGGAGTGCGGATGAACCTATGACAACGTATGTAACATGTGTAAACTGCAATAATCGTTGGAAGTTCTGTTAG

Protein Analysis

380

Amino Acids

42.46

Weight (kDa)

9.0

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 34 - 83 1.1e-10 TFIIS helical bundle-like domain
TFIIS_M PF07500 208 - 326 1.1e-32 Transcription factor S-II (TFIIS), central domain
Zn_ribbon_TFIIS PF01096 339 - 377 9.3e-19 Transcription factor S-II (TFIIS)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011422)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 6 cut(s) 47, 54, 853, 911, 1023, 1076
AclWI GGATC 2 cut(s) 18, 719
AcuI CTGAAG 3 cut(s) 201, 507, 848
AcvI CACGTG 1 cut(s) 323
AcyI GRCGYC 2 cut(s) 30, 51
AfaI GTAC 1 cut(s) 651
AfiI CCNNNNNNNGG 1 cut(s) 1075
AflIII ACRYGT 1 cut(s) 1103
AgsI TTSAA 4 cut(s) 488, 823, 956, 1018
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 8 cut(s) 22, 112, 438, 449, 518, 632, 722, 952
AluI AGCT 8 cut(s) 22, 112, 438, 449, 518, 632, 722, 952
Alw21I GWGCWC 1 cut(s) 994
Alw26I GTCTC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 990
AlwI GGATC 2 cut(s) 18, 719
Ama87I CYCGRG 1 cut(s) 633
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 3 cut(s) 99, 220, 338
ApaLI GTGCAC 1 cut(s) 990
ApeKI GCWGC 4 cut(s) 109, 518, 655, 719
AspLEI GCGC 1 cut(s) 1041
AspS9I GGNCC 3 cut(s) 590, 832, 898
AsuC2I CCSGG 1 cut(s) 1069
AsuHPI GGTGA 2 cut(s) 701, 724
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 3 cut(s) 590, 832, 898
BaeGI GKGCMC 1 cut(s) 994
BauI CACGAG 1 cut(s) 893
BbrPI CACGTG 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 161, 362
Bbv12I GWGCWC 1 cut(s) 994
BbvI GCAGC 4 cut(s) 121, 505, 642, 731
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 337
BclI TGATCA 1 cut(s) 925
BcnI CCSGG 1 cut(s) 1069
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 192
BisI GCNGC 5 cut(s) 54, 110, 519, 656, 720
BlsI GCNGC 5 cut(s) 55, 111, 520, 657, 721
Bme1390I CCNGG 2 cut(s) 337, 1069
Bme18I GGWCC 3 cut(s) 590, 832, 898
BmeT110I CYCGRG 1 cut(s) 633
BmgBI CACGTC 1 cut(s) 562
BmgT120I GGNCC 3 cut(s) 590, 832, 898
BmiI GGNNCC 4 cut(s) 76, 592, 781, 790
BmrFI CCNGG 2 cut(s) 337, 1069
BmrI ACTGGG 1 cut(s) 781
BmuI ACTGGG 1 cut(s) 781
BpiI GAAGAC 2 cut(s) 161, 362
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 1069
Bsa29I ATCGAT 1 cut(s) 808
BsaAI YACGTR 1 cut(s) 323
BsaHI GRCGYC 2 cut(s) 30, 51
BsaJI CCNNGG 4 cut(s) 78, 335, 387, 672
BsaWI WCCGGW 1 cut(s) 458
Bsc4I CCNNNNNNNGG 1 cut(s) 1075
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 1 cut(s) 776
BseAI TCCGGA 1 cut(s) 458
BseBI CCWGG 1 cut(s) 337
BseCI ATCGAT 1 cut(s) 808
BseDI CCNNGG 4 cut(s) 78, 335, 387, 672
BseGI GGATG 4 cut(s) 187, 547, 712, 1084
BseLI CCNNNNNNNGG 1 cut(s) 1075
BseMII CTCAG 4 cut(s) 333, 432, 501, 672
BseNI ACTGG 1 cut(s) 776
BseRI GAGGAG 3 cut(s) 87, 698, 953
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 4 cut(s) 121, 505, 642, 731
Bsh1285I CGRYCG 1 cut(s) 1027
BshFI GGCC 3 cut(s) 101, 222, 340
BshVI ATCGAT 1 cut(s) 808
BsiEI CGRYCG 1 cut(s) 1027
BsiHKAI GWGCWC 1 cut(s) 994
BsiHKCI CYCGRG 1 cut(s) 633
BsiSI CCGG 3 cut(s) 459, 786, 1069
BslFI GGGAC 2 cut(s) 576, 650
BslI CCNNNNNNNGG 1 cut(s) 1075
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 576, 650
BsmI GAATGC 2 cut(s) 95, 721
BsnI GGCC 3 cut(s) 101, 222, 340
BsoBI CYCGRG 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 994
Bsp13I TCCGGA 1 cut(s) 458
Bsp143I GATC 6 cut(s) 10, 418, 724, 809, 925, 1009
BspACI CCGC 6 cut(s) 47, 54, 853, 911, 1023, 1076
BspANI GGCC 3 cut(s) 101, 222, 340
BspCNI CTCAG 4 cut(s) 334, 433, 502, 673
BspDI ATCGAT 1 cut(s) 808
BspEI TCCGGA 1 cut(s) 458
BspLI GGNNCC 4 cut(s) 76, 592, 781, 790
BspPI GGATC 2 cut(s) 18, 719
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 1 cut(s) 776
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 4 cut(s) 78, 335, 387, 672
BssMI GATC 6 cut(s) 10, 418, 724, 809, 925, 1009
BssNI GRCGYC 2 cut(s) 30, 51
BssSI CACGAG 1 cut(s) 893
BssT1I CCWWGG 2 cut(s) 387, 672
Bst2BI CACGAG 1 cut(s) 893
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 466, 748
Bst6I CTCTTC 1 cut(s) 589
BstACI GRCGYC 2 cut(s) 30, 51
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 980
BstDEI CTNAG 5 cut(s) 342, 441, 510, 681, 801
BstF5I GGATG 4 cut(s) 187, 547, 712, 1084
BstHHI GCGC 1 cut(s) 1041
BstKTI GATC 6 cut(s) 13, 421, 727, 812, 928, 1012
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 6 cut(s) 10, 418, 724, 809, 925, 1009
BstMCI CGRYCG 1 cut(s) 1027
BstMWI GCNNNNNNNGC 3 cut(s) 53, 917, 998
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 1107
BstSCI CCNGG 2 cut(s) 335, 1067
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 4 cut(s) 121, 505, 642, 731
BstV2I GAAGAC 2 cut(s) 161, 362
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 808
BsuRI GGCC 3 cut(s) 101, 222, 340
BsuTUI ATCGAT 1 cut(s) 808
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 4 cut(s) 187, 547, 712, 1084
BtsIMutI CAGTG 3 cut(s) 531, 575, 744
Cac8I GCNNGC 1 cut(s) 980
CfoI GCGC 1 cut(s) 1041
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 3 cut(s) 590, 832, 898
ClaI ATCGAT 1 cut(s) 808
CseI GACGC 3 cut(s) 38, 59, 155
Csp6I GTAC 1 cut(s) 650
CviAII CATG 2 cut(s) 659, 1104
CviQI GTAC 1 cut(s) 650
DdeI CTNAG 5 cut(s) 342, 441, 510, 681, 801
DpnI GATC 6 cut(s) 12, 420, 726, 811, 927, 1011
DpnII GATC 6 cut(s) 10, 418, 724, 809, 925, 1009
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
EciI GGCGGA 1 cut(s) 62
Eco130I CCWWGG 2 cut(s) 387, 672
Eco147I AGGCCT 3 cut(s) 101, 222, 340
Eco47I GGWCC 3 cut(s) 590, 832, 898
Eco57I CTGAAG 3 cut(s) 201, 507, 848
Eco72I CACGTG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 2 cut(s) 387, 672
ErhI CCWWGG 2 cut(s) 387, 672
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 2 cut(s) 662, 1107
FaiI YATR 8 cut(s) 251, 453, 611, 660, 876, 1088, 1098, 1105
FalI AAGNNNNNCTT 2 cut(s) 852, 884
FaqI GGGAC 2 cut(s) 576, 650
FatI CATG 2 cut(s) 658, 1103
FbaI TGATCA 1 cut(s) 925
Fnu4HI GCNGC 5 cut(s) 54, 110, 519, 656, 720
FokI GGATG 4 cut(s) 174, 554, 719, 1091
Fsp4HI GCNGC 5 cut(s) 54, 110, 519, 656, 720
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 1040
GluI GCNGC 5 cut(s) 54, 110, 519, 656, 720
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 3 cut(s) 101, 222, 340
HapII CCGG 3 cut(s) 459, 786, 1069
HgaI GACGC 3 cut(s) 38, 59, 155
HhaI GCGC 1 cut(s) 1041
Hin1I GRCGYC 2 cut(s) 30, 51
Hin1II CATG 2 cut(s) 662, 1107
Hin6I GCGC 1 cut(s) 1039
HinP1I GCGC 1 cut(s) 1039
HincII GTYRAC 2 cut(s) 603, 906
HindII GTYRAC 2 cut(s) 603, 906
HindIII AAGCTT 2 cut(s) 447, 950
HinfI GANTC 4 cut(s) 299, 314, 752, 841
HpaI GTTAAC 1 cut(s) 603
HpaII CCGG 3 cut(s) 459, 786, 1069
HphI GGTGA 2 cut(s) 701, 724
Hpy166II GTNNAC 6 cut(s) 603, 898, 906, 992, 1034, 1111
Hpy188I TCNGA 4 cut(s) 354, 442, 682, 930
Hpy188III TCNNGA 6 cut(s) 17, 422, 459, 505, 635, 845
Hpy8I GTNNAC 6 cut(s) 603, 898, 906, 992, 1034, 1111
Hpy99I CGWCG 2 cut(s) 32, 71
HpyAV CCTTC 8 cut(s) 112, 340, 364, 373, 406, 532, 790, 823
HpyCH4III ACNGT 2 cut(s) 466, 748
HpyCH4IV ACGT 4 cut(s) 310, 322, 561, 1094
HpyCH4V TGCA 5 cut(s) 658, 719, 992, 1063, 1116
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 917, 998
HpyF3I CTNAG 5 cut(s) 342, 441, 510, 681, 801
HpySE526I ACGT 4 cut(s) 310, 322, 561, 1094
Hsp92I GRCGYC 2 cut(s) 30, 51
Hsp92II CATG 2 cut(s) 662, 1107
HspAI GCGC 1 cut(s) 1039
Kpn2I TCCGGA 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 925
KspAI GTTAAC 1 cut(s) 603
Kzo9I GATC 6 cut(s) 10, 418, 724, 809, 925, 1009
LmnI GCTCC 3 cut(s) 19, 74, 794
Lsp1109I GCAGC 4 cut(s) 121, 505, 642, 731
MaeI CTAG 1 cut(s) 192
MaeII ACGT 4 cut(s) 310, 322, 561, 1094
MaeIII GTNAC 3 cut(s) 127, 742, 1099
MalI GATC 6 cut(s) 12, 420, 726, 811, 927, 1011
MboI GATC 6 cut(s) 10, 418, 724, 809, 925, 1009
MboII GAAGA 6 cut(s) 5, 49, 161, 367, 576, 577
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 994
MluCI AATT 2 cut(s) 118, 1013
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 2 cut(s) 139, 1106
MroI TCCGGA 1 cut(s) 458
MseI TTAA 4 cut(s) 408, 495, 602, 615
MspA1I CMGCKG 2 cut(s) 722, 911
MspI CCGG 3 cut(s) 459, 786, 1069
MspR9I CCNGG 2 cut(s) 337, 1069
Mva1269I GAATGC 2 cut(s) 95, 721
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 3 cut(s) 53, 917, 998
NciI CCSGG 1 cut(s) 1069
NdeII GATC 6 cut(s) 10, 418, 724, 809, 925, 1009
NlaIII CATG 2 cut(s) 662, 1107
NlaIV GGNNCC 4 cut(s) 76, 592, 781, 790
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 127, 742
NspI RCATGY 1 cut(s) 1107
PceI AGGCCT 3 cut(s) 101, 222, 340
PciI ACATGT 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 2 cut(s) 95, 721
PfeI GAWTC 3 cut(s) 314, 752, 841
PkrI GCNGC 5 cut(s) 55, 111, 520, 657, 721
PleI GAGTC 1 cut(s) 293
PmaCI CACGTG 1 cut(s) 323
PmlI CACGTG 1 cut(s) 323
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 1103
Psp6I CCWGG 1 cut(s) 335
PspCI CACGTG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 4 cut(s) 76, 592, 781, 790
PspPI GGNCC 3 cut(s) 590, 832, 898
PsuI RGATCY 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 1 cut(s) 651
RsaNI GTAC 1 cut(s) 650
SaqAI TTAA 4 cut(s) 408, 495, 602, 615
SatI GCNGC 5 cut(s) 54, 110, 519, 656, 720
Sau3AI GATC 6 cut(s) 10, 418, 724, 809, 925, 1009
Sau96I GGNCC 3 cut(s) 590, 832, 898
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 337, 1069
SduI GDGCHC 1 cut(s) 994
SinI GGWCC 3 cut(s) 590, 832, 898
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 2 cut(s) 118, 1013
SseBI AGGCCT 3 cut(s) 101, 222, 340
SsiI CCGC 6 cut(s) 47, 54, 853, 911, 1023, 1076
SspMI CTAG 1 cut(s) 192
StuI AGGCCT 3 cut(s) 101, 222, 340
StyD4I CCNGG 2 cut(s) 335, 1067
StyI CCWWGG 2 cut(s) 387, 672
TaaI ACNGT 2 cut(s) 466, 748
TaiI ACGT 4 cut(s) 313, 325, 564, 1097
TaqI TCGA 7 cut(s) 27, 105, 172, 733, 808, 879, 1027
TasI AATT 2 cut(s) 118, 1013
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 3 cut(s) 314, 752, 841
Tru1I TTAA 4 cut(s) 408, 495, 602, 615
Tru9I TTAA 4 cut(s) 408, 495, 602, 615
TscAI CASTG 3 cut(s) 531, 582, 751
TseFI GTSAC 2 cut(s) 127, 742
TseI GCWGC 4 cut(s) 109, 518, 655, 719
Tsp45I GTSAC 2 cut(s) 127, 742
TspDTI ATGAA 3 cut(s) 558, 708, 1095
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 531, 582, 751
VneI GTGCAC 1 cut(s) 990
VpaK11BI GGWCC 3 cut(s) 590, 832, 898
XceI RCATGY 1 cut(s) 1107
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.