FvH4_7g26060

Transcription elongation factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
19795520 .. 19798973
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26060.t2

Sequence Viewer

Length: 1161 bp
ATGGAGAAGGAGCTGCTGGAGGTGTTTGATGACGTCACGAAGGCTGCCGACGCCGCGAAATCGTGCGATGGTGGCGCGGATGAGAGTGAGTGCCTTGAGGCGTTGGACCGCCTCAAGAATTTCCCCGTCTCTTATCAGCTCCTCGTCTCTACCCAAGTTGGGAAGCGTCTGAAGAATCTCACGAAACATCCTAGGAAGAAAATCCAGGCTTTTGCGCTTGAGCTGATGGAGGTCTGGAAACAAATTGTCATTGATGAAACAATGAAGAACGATGTGAAGACAATGAAAAACGATGTGAAGAATGGCAGGTTTGAAAGAAAAGATTCTCTAAAGCGTGAGACTTCGAATCCCAATAGTCCCAGGCCTGAGAAGGTTCTGAAAACTGCTGCTGGGAAGGTGGAGAAGGTCCCCAAGGCTGAACAGGGCGACGTTAAGATGGTTGATCATGATGTTAAATCGAGCTCGGAGAAAGCATATAGTTCTGAAAGTGGGACAACGGATTGTAAGGTTGAAAATCATATTGTTGTCAAGACTGAGAAAGCTCCGTCAGTGGATAATGTCAAGGTTGAAAAGATAACCAGAGAAGTGAAGAAACCTGTGTCTGGTCCCCCAAAGTTGACATCTATACCAAAGTCTAATGATCAAGCAAGGGACAGAATAAGGGGAATGCTGCATGAGGCTTTATCCAAGGTCTCCCAGGAGTCTCTGCATAATGAAAAATTTGCTGATTCAGTGAATGTGTGCGACCCTATCAGAGTTGCTGTTACAGTGGAGTCTGTGCTGTTTGAGAACTGGGGTGGTTCCAATGGAACCCAGAAGGCGAAGTATCGATCACTAATGTTTAACCTGAAGGACCAGAAGAACCCAGATTTTCGCAGAAAAGTTCTTCTTGGAGATATCAAGGCAGAGAGGCTTGTAGACATGTCCACAGTTGAAATGGCAAGTGATGAGAGGCAATCAGAGAATAAAAAGCTTGAGGAAAAGGCACTGTTTGATTGTGAGGTTGAACGTGCACCAGAAGCTTCAACTGATCAATTCAAATGTGGTCGATGTGGGAAGCGCAAGACCACCTACTACCAGATGCAGACGCGGAGTGCCGATGAACCTATGACAACATATGTAACATGTGTAATCTGCAATAACCGTTGGAAGTTCTGTTAG

Protein Analysis

387

Amino Acids

43.68

Weight (kDa)

8.79

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 33 - 83 8.3e-11 TFIIS helical bundle-like domain
TFIIS_M PF07500 213 - 333 4e-34 Transcription factor S-II (TFIIS), central domain
Zn_ribbon_TFIIS PF01096 346 - 384 8.7e-18 Transcription factor S-II (TFIIS)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011422)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 918
AccII CGCG 3 cut(s) 56, 77, 1090
AciI CCGC 4 cut(s) 54, 77, 109, 1090
AcsI RAATTY 2 cut(s) 118, 719
AcuI CTGAAG 2 cut(s) 191, 869
AcyI GRCGYC 2 cut(s) 33, 51
AfiI CCNNNNNNNGG 2 cut(s) 159, 602
AflIII ACRYGT 2 cut(s) 921, 1124
AgsI TTSAA 7 cut(s) 314, 512, 569, 935, 1007, 1026, 1039
AjnI CCWGG 3 cut(s) 204, 359, 696
AluBI AGCT 7 cut(s) 13, 139, 223, 462, 542, 973, 1022
AluI AGCT 7 cut(s) 13, 139, 223, 462, 542, 973, 1022
Alw21I GWGCWC 2 cut(s) 464, 1015
Alw26I GTCTC 5 cut(s) 133, 151, 332, 697, 708
Alw44I GTGCAC 1 cut(s) 1011
AoxI GGCC 1 cut(s) 362
ApaLI GTGCAC 1 cut(s) 1011
ApeKI GCWGC 4 cut(s) 13, 44, 386, 670
ApoI RAATTY 2 cut(s) 118, 719
Asp700I GAANNNNTTC 1 cut(s) 322
AspA2I CCTAGG 1 cut(s) 191
AspLEI GCGC 3 cut(s) 77, 217, 1062
AspS9I GGNCC 4 cut(s) 106, 406, 605, 853
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 4 cut(s) 106, 406, 605, 853
AvrII CCTAGG 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 1015
BanII GRGCYC 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 464, 1015
BbvI GCAGC 3 cut(s) 31, 373, 657
BccI CCATC 3 cut(s) 62, 220, 430
BciT130I CCWGG 3 cut(s) 206, 361, 698
BclI TGATCA 3 cut(s) 442, 640, 1030
BcoDI GTCTC 5 cut(s) 133, 151, 332, 697, 708
BfaI CTAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 297
BisI GCNGC 5 cut(s) 14, 45, 54, 387, 671
BlnI CCTAGG 1 cut(s) 191
BlsI GCNGC 5 cut(s) 15, 46, 55, 388, 672
Bme1390I CCNGG 3 cut(s) 206, 361, 698
Bme18I GGWCC 4 cut(s) 106, 406, 605, 853
BmgT120I GGNCC 4 cut(s) 106, 406, 605, 853
BmiI GGNNCC 4 cut(s) 408, 607, 802, 811
BmrFI CCNGG 3 cut(s) 206, 361, 698
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 1 cut(s) 1071
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 4 cut(s) 98, 116, 239, 995
Bsa29I ATCGAT 1 cut(s) 829
BsaHI GRCGYC 2 cut(s) 33, 51
BsaI GGTCTC 1 cut(s) 697
BsaJI CCNNGG 5 cut(s) 191, 359, 411, 687, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 602
Bse1I ACTGG 1 cut(s) 797
BseBI CCWGG 3 cut(s) 206, 361, 698
BseCI ATCGAT 1 cut(s) 829
BseDI CCNNGG 5 cut(s) 191, 359, 411, 687, 696
BseGI GGATG 2 cut(s) 85, 187
BseLI CCNNNNNNNGG 2 cut(s) 159, 602
BseMII CTCAG 2 cut(s) 357, 525
BseNI ACTGG 1 cut(s) 797
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 1015
BseXI GCAGC 3 cut(s) 31, 373, 657
BseYI CCCAGC 1 cut(s) 389
Bsh1236I CGCG 3 cut(s) 56, 77, 1090
BshFI GGCC 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 829
BsiHKAI GWGCWC 2 cut(s) 464, 1015
BslFI GGGAC 5 cut(s) 342, 392, 505, 591, 665
BslI CCNNNNNNNGG 2 cut(s) 159, 602
BsmAI GTCTC 5 cut(s) 133, 151, 332, 697, 708
BsmBI CGTCTC 2 cut(s) 133, 151
BsmFI GGGAC 5 cut(s) 342, 392, 505, 591, 665
BsmI GAATGC 1 cut(s) 672
BsnI GGCC 1 cut(s) 364
Bso31I GGTCTC 1 cut(s) 697
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 464, 1015
Bsp143I GATC 4 cut(s) 442, 640, 830, 1030
BspACI CCGC 4 cut(s) 54, 77, 109, 1090
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 2 cut(s) 358, 526
BspDI ATCGAT 1 cut(s) 829
BspFNI CGCG 3 cut(s) 56, 77, 1090
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 4 cut(s) 408, 607, 802, 811
BspMI ACCTGC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 697
BsrI ACTGG 1 cut(s) 797
BssECI CCNNGG 5 cut(s) 191, 359, 411, 687, 696
BssMI GATC 4 cut(s) 442, 640, 830, 1030
BssNI GRCGYC 2 cut(s) 33, 51
BssT1I CCWWGG 3 cut(s) 191, 411, 687
Bst2UI CCWGG 3 cut(s) 206, 361, 698
Bst4CI ACNGT 4 cut(s) 769, 931, 990, 1145
BstACI GRCGYC 2 cut(s) 33, 51
BstBI TTCGAA 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 366, 534
BstF5I GGATG 2 cut(s) 85, 187
BstFNI CGCG 3 cut(s) 56, 77, 1090
BstHHI GCGC 3 cut(s) 77, 217, 1062
BstKTI GATC 4 cut(s) 445, 643, 833, 1033
BstMAI GTCTC 5 cut(s) 133, 151, 332, 697, 708
BstMBI GATC 4 cut(s) 442, 640, 830, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 50, 53, 72, 1019
BstNI CCWGG 3 cut(s) 206, 361, 698
BstNSI RCATGY 2 cut(s) 925, 1128
BstSCI CCNGG 3 cut(s) 204, 359, 696
BstSLI GKGCMC 1 cut(s) 1015
BstUI CGCG 3 cut(s) 56, 77, 1090
BstV1I GCAGC 3 cut(s) 31, 373, 657
BstV2I GAAGAC 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 829
BsuRI GGCC 1 cut(s) 364
BsuTUI ATCGAT 1 cut(s) 829
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 85, 187
BtsIMutI CAGTG 4 cut(s) 555, 738, 774, 986
BveI ACCTGC 1 cut(s) 297
CciI TCATGA 1 cut(s) 445
CfoI GCGC 3 cut(s) 77, 217, 1062
Cfr13I GGNCC 4 cut(s) 106, 406, 605, 853
ClaI ATCGAT 1 cut(s) 829
CseI GACGC 3 cut(s) 59, 155, 1096
CviAII CATG 4 cut(s) 446, 674, 922, 1125
DdeI CTNAG 2 cut(s) 366, 534
DpnI GATC 4 cut(s) 444, 642, 832, 1032
DpnII GATC 4 cut(s) 442, 640, 830, 1030
Ecl136II GAGCTC 1 cut(s) 462
Eco130I CCWWGG 3 cut(s) 191, 411, 687
Eco147I AGGCCT 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 464
Eco31I GGTCTC 1 cut(s) 697
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 4 cut(s) 106, 406, 605, 853
Eco53kI GAGCTC 1 cut(s) 462
Eco57I CTGAAG 2 cut(s) 191, 869
EcoICRI GAGCTC 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 3 cut(s) 204, 359, 696
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 3 cut(s) 191, 411, 687
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 3 cut(s) 191, 411, 687
Esp3I CGTCTC 2 cut(s) 133, 151
FaeI CATG 4 cut(s) 449, 677, 925, 1128
FalI AAGNNNNNCTT 2 cut(s) 873, 905
FaqI GGGAC 5 cut(s) 342, 392, 505, 591, 665
FatI CATG 4 cut(s) 445, 673, 921, 1124
FauNDI CATATG 1 cut(s) 1117
FbaI TGATCA 3 cut(s) 442, 640, 1030
FblI GTMKAC 1 cut(s) 918
Fnu4HI GCNGC 5 cut(s) 14, 45, 54, 387, 671
FokI GGATG 2 cut(s) 92, 174
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 5 cut(s) 14, 45, 54, 387, 671
FspBI CTAG 1 cut(s) 192
GlaI GCGC 3 cut(s) 76, 216, 1061
GluI GCNGC 5 cut(s) 14, 45, 54, 387, 671
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 364
HgaI GACGC 3 cut(s) 59, 155, 1096
HhaI GCGC 3 cut(s) 77, 217, 1062
Hin1I GRCGYC 2 cut(s) 33, 51
Hin1II CATG 4 cut(s) 449, 677, 925, 1128
Hin6I GCGC 3 cut(s) 75, 215, 1060
HinP1I GCGC 3 cut(s) 75, 215, 1060
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HindIII AAGCTT 2 cut(s) 971, 1020
HinfI GANTC 6 cut(s) 175, 323, 346, 701, 728, 773
Hpy166II GTNNAC 4 cut(s) 618, 919, 927, 1013
Hpy188I TCNGA 6 cut(s) 171, 378, 466, 484, 755, 961
Hpy188III TCNNGA 6 cut(s) 37, 115, 181, 235, 446, 529
Hpy8I GTNNAC 4 cut(s) 618, 919, 927, 1013
Hpy99I CGWCG 2 cut(s) 53, 431
HpyAV CCTTC 6 cut(s) 34, 364, 388, 397, 811, 844
HpyCH4III ACNGT 4 cut(s) 769, 931, 990, 1145
HpyCH4IV ACGT 3 cut(s) 33, 429, 1009
HpyCH4V TGCA 5 cut(s) 673, 709, 1013, 1084, 1137
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 53, 72, 1019
HpyF3I CTNAG 2 cut(s) 366, 534
HpySE526I ACGT 3 cut(s) 33, 429, 1009
Hsp92I GRCGYC 2 cut(s) 33, 51
Hsp92II CATG 4 cut(s) 449, 677, 925, 1128
HspAI GCGC 3 cut(s) 75, 215, 1060
Ksp22I TGATCA 3 cut(s) 442, 640, 1030
Kzo9I GATC 4 cut(s) 442, 640, 830, 1030
LmnI GCTCC 3 cut(s) 10, 144, 547
Lsp1109I GCAGC 3 cut(s) 31, 373, 657
LweI GCATC 1 cut(s) 1071
MaeI CTAG 1 cut(s) 192
MaeII ACGT 3 cut(s) 33, 429, 1009
MaeIII GTNAC 3 cut(s) 34, 763, 1120
MalI GATC 4 cut(s) 444, 642, 832, 1032
MboI GATC 4 cut(s) 442, 640, 830, 1030
MboII GAAGA 8 cut(s) 184, 208, 277, 289, 310, 601, 871, 878
MhlI GDGCHC 2 cut(s) 464, 1015
MluCI AATT 4 cut(s) 118, 243, 719, 1034
MlyI GAGTC 2 cut(s) 710, 782
MmeI TCCRAC 2 cut(s) 84, 1127
MroXI GAANNNNTTC 1 cut(s) 322
MseI TTAA 3 cut(s) 432, 453, 843
MspR9I CCNGG 3 cut(s) 206, 361, 698
Mva1269I GAATGC 1 cut(s) 672
MvaI CCWGG 3 cut(s) 206, 361, 698
MvnI CGCG 3 cut(s) 56, 77, 1090
MwoI GCNNNNNNNGC 4 cut(s) 50, 53, 72, 1019
NdeI CATATG 1 cut(s) 1117
NdeII GATC 4 cut(s) 442, 640, 830, 1030
NlaIII CATG 4 cut(s) 449, 677, 925, 1128
NlaIV GGNNCC 4 cut(s) 408, 607, 802, 811
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 2 cut(s) 925, 1128
NspV TTCGAA 1 cut(s) 344
PagI TCATGA 1 cut(s) 445
PceI AGGCCT 1 cut(s) 364
PciI ACATGT 2 cut(s) 921, 1124
PctI GAATGC 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 322
PfeI GAWTC 4 cut(s) 175, 323, 346, 728
PkrI GCNGC 5 cut(s) 15, 46, 55, 388, 672
PleI GAGTC 2 cut(s) 709, 781
PpsI GAGTC 2 cut(s) 709, 781
PpuMI RGGWCCY 1 cut(s) 406
PscI ACATGT 2 cut(s) 921, 1124
Psp124BI GAGCTC 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 3 cut(s) 204, 359, 696
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 3 cut(s) 204, 359, 696
PspN4I GGNNCC 4 cut(s) 408, 607, 802, 811
PspPI GGNCC 4 cut(s) 106, 406, 605, 853
PspPPI RGGWCCY 1 cut(s) 406
SacI GAGCTC 1 cut(s) 464
SaqAI TTAA 3 cut(s) 432, 453, 843
SatI GCNGC 5 cut(s) 14, 45, 54, 387, 671
Sau3AI GATC 4 cut(s) 442, 640, 830, 1030
Sau96I GGNCC 4 cut(s) 106, 406, 605, 853
SchI GAGTC 2 cut(s) 710, 782
ScrFI CCNGG 3 cut(s) 206, 361, 698
SduI GDGCHC 2 cut(s) 464, 1015
SfaNI GCATC 1 cut(s) 1071
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 4 cut(s) 106, 406, 605, 853
SmlI CTYRAG 4 cut(s) 95, 113, 218, 974
SmoI CTYRAG 4 cut(s) 95, 113, 218, 974
Sse9I AATT 4 cut(s) 118, 243, 719, 1034
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 4 cut(s) 54, 77, 109, 1090
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 464
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 3 cut(s) 204, 359, 696
StyI CCWWGG 3 cut(s) 191, 411, 687
TaaI ACNGT 4 cut(s) 769, 931, 990, 1145
TaiI ACGT 3 cut(s) 36, 432, 1012
TaqI TCGA 4 cut(s) 344, 458, 829, 1048
TasI AATT 4 cut(s) 118, 243, 719, 1034
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 175, 323, 346, 728
Tru1I TTAA 3 cut(s) 432, 453, 843
Tru9I TTAA 3 cut(s) 432, 453, 843
TscAI CASTG 4 cut(s) 555, 738, 774, 993
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 4 cut(s) 13, 44, 386, 670
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 5 cut(s) 270, 278, 299, 729, 1116
TspGWI ACGGA 2 cut(s) 512, 534
TspRI CASTG 4 cut(s) 555, 738, 774, 993
VneI GTGCAC 1 cut(s) 1011
VpaK11BI GGWCC 4 cut(s) 106, 406, 605, 853
XapI RAATTY 2 cut(s) 118, 719
XceI RCATGY 2 cut(s) 925, 1128
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XmaJI CCTAGG 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 918
XmnI GAANNNNTTC 1 cut(s) 322
XspI CTAG 1 cut(s) 192
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.