Transcription elongation factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G38560 |
| fragaria_vesca | FvH4_7g26060 FvH4_7g26060 FvH4_7g26060 |
| malus_domestica | MD01G1169100.v1.1 MD07G1235000.v1.1 |
| prunus_persica | Prupe.2G265300_v2.0.a1 |
| pyrus_communis | pycom01g18180 pycom07g21250 |
| rosa_chinensis | RchiOBHm_Chr1g0372471 |
| rosa_laevigata | RLG00000026896 |
| rosa_multiflora | Rmu_sc0005410.1_g000001 Rmu_sc0011709.1_g000008 |
| rosa_roxburghii | Rroxscaffold_4G00284880 |
| rosa_rugosa | Rorug01G0372200 |
| rosa_samantha | Rh1AG380700 Rh1BG344300 Rh1CG357700 Rh1DG375500 |
| rosa_wichuraiana | Rw1G033490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 36 |
| Acc36I | ACCTGC | 1 cut(s) | 297 |
| AccI | GTMKAC | 1 cut(s) | 918 |
| AccII | CGCG | 3 cut(s) | 56, 77, 1090 |
| AciI | CCGC | 4 cut(s) | 54, 77, 109, 1090 |
| AcsI | RAATTY | 2 cut(s) | 118, 719 |
| AcuI | CTGAAG | 2 cut(s) | 191, 869 |
| AcyI | GRCGYC | 2 cut(s) | 33, 51 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 159, 602 |
| AflIII | ACRYGT | 2 cut(s) | 921, 1124 |
| AgsI | TTSAA | 7 cut(s) | 314, 512, 569, 935, 1007, 1026, 1039 |
| AjnI | CCWGG | 3 cut(s) | 204, 359, 696 |
| AluBI | AGCT | 7 cut(s) | 13, 139, 223, 462, 542, 973, 1022 |
| AluI | AGCT | 7 cut(s) | 13, 139, 223, 462, 542, 973, 1022 |
| Alw21I | GWGCWC | 2 cut(s) | 464, 1015 |
| Alw26I | GTCTC | 5 cut(s) | 133, 151, 332, 697, 708 |
| Alw44I | GTGCAC | 1 cut(s) | 1011 |
| AoxI | GGCC | 1 cut(s) | 362 |
| ApaLI | GTGCAC | 1 cut(s) | 1011 |
| ApeKI | GCWGC | 4 cut(s) | 13, 44, 386, 670 |
| ApoI | RAATTY | 2 cut(s) | 118, 719 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 322 |
| AspA2I | CCTAGG | 1 cut(s) | 191 |
| AspLEI | GCGC | 3 cut(s) | 77, 217, 1062 |
| AspS9I | GGNCC | 4 cut(s) | 106, 406, 605, 853 |
| AsuII | TTCGAA | 1 cut(s) | 344 |
| AvaII | GGWCC | 4 cut(s) | 106, 406, 605, 853 |
| AvrII | CCTAGG | 1 cut(s) | 191 |
| BaeGI | GKGCMC | 1 cut(s) | 1015 |
| BanII | GRGCYC | 1 cut(s) | 464 |
| BbsI | GAAGAC | 1 cut(s) | 284 |
| Bbv12I | GWGCWC | 2 cut(s) | 464, 1015 |
| BbvI | GCAGC | 3 cut(s) | 31, 373, 657 |
| BccI | CCATC | 3 cut(s) | 62, 220, 430 |
| BciT130I | CCWGG | 3 cut(s) | 206, 361, 698 |
| BclI | TGATCA | 3 cut(s) | 442, 640, 1030 |
| BcoDI | GTCTC | 5 cut(s) | 133, 151, 332, 697, 708 |
| BfaI | CTAG | 1 cut(s) | 192 |
| BfuAI | ACCTGC | 1 cut(s) | 297 |
| BisI | GCNGC | 5 cut(s) | 14, 45, 54, 387, 671 |
| BlnI | CCTAGG | 1 cut(s) | 191 |
| BlsI | GCNGC | 5 cut(s) | 15, 46, 55, 388, 672 |
| Bme1390I | CCNGG | 3 cut(s) | 206, 361, 698 |
| Bme18I | GGWCC | 4 cut(s) | 106, 406, 605, 853 |
| BmgT120I | GGNCC | 4 cut(s) | 106, 406, 605, 853 |
| BmiI | GGNNCC | 4 cut(s) | 408, 607, 802, 811 |
| BmrFI | CCNGG | 3 cut(s) | 206, 361, 698 |
| BmrI | ACTGGG | 1 cut(s) | 802 |
| BmsI | GCATC | 1 cut(s) | 1071 |
| BmuI | ACTGGG | 1 cut(s) | 802 |
| BpiI | GAAGAC | 1 cut(s) | 284 |
| BpmI | CTGGAG | 1 cut(s) | 38 |
| Bpu14I | TTCGAA | 1 cut(s) | 344 |
| BpuEI | CTTGAG | 4 cut(s) | 98, 116, 239, 995 |
| Bsa29I | ATCGAT | 1 cut(s) | 829 |
| BsaHI | GRCGYC | 2 cut(s) | 33, 51 |
| BsaI | GGTCTC | 1 cut(s) | 697 |
| BsaJI | CCNNGG | 5 cut(s) | 191, 359, 411, 687, 696 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 159, 602 |
| Bse1I | ACTGG | 1 cut(s) | 797 |
| BseBI | CCWGG | 3 cut(s) | 206, 361, 698 |
| BseCI | ATCGAT | 1 cut(s) | 829 |
| BseDI | CCNNGG | 5 cut(s) | 191, 359, 411, 687, 696 |
| BseGI | GGATG | 2 cut(s) | 85, 187 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 159, 602 |
| BseMII | CTCAG | 2 cut(s) | 357, 525 |
| BseNI | ACTGG | 1 cut(s) | 797 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseSI | GKGCMC | 1 cut(s) | 1015 |
| BseXI | GCAGC | 3 cut(s) | 31, 373, 657 |
| BseYI | CCCAGC | 1 cut(s) | 389 |
| Bsh1236I | CGCG | 3 cut(s) | 56, 77, 1090 |
| BshFI | GGCC | 1 cut(s) | 364 |
| BshVI | ATCGAT | 1 cut(s) | 829 |
| BsiHKAI | GWGCWC | 2 cut(s) | 464, 1015 |
| BslFI | GGGAC | 5 cut(s) | 342, 392, 505, 591, 665 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 159, 602 |
| BsmAI | GTCTC | 5 cut(s) | 133, 151, 332, 697, 708 |
| BsmBI | CGTCTC | 2 cut(s) | 133, 151 |
| BsmFI | GGGAC | 5 cut(s) | 342, 392, 505, 591, 665 |
| BsmI | GAATGC | 1 cut(s) | 672 |
| BsnI | GGCC | 1 cut(s) | 364 |
| Bso31I | GGTCTC | 1 cut(s) | 697 |
| Bsp119I | TTCGAA | 1 cut(s) | 344 |
| Bsp1286I | GDGCHC | 2 cut(s) | 464, 1015 |
| Bsp143I | GATC | 4 cut(s) | 442, 640, 830, 1030 |
| BspACI | CCGC | 4 cut(s) | 54, 77, 109, 1090 |
| BspANI | GGCC | 1 cut(s) | 364 |
| BspCNI | CTCAG | 2 cut(s) | 358, 526 |
| BspDI | ATCGAT | 1 cut(s) | 829 |
| BspFNI | CGCG | 3 cut(s) | 56, 77, 1090 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 4 cut(s) | 408, 607, 802, 811 |
| BspMI | ACCTGC | 1 cut(s) | 297 |
| BspT104I | TTCGAA | 1 cut(s) | 344 |
| BspTNI | GGTCTC | 1 cut(s) | 697 |
| BsrI | ACTGG | 1 cut(s) | 797 |
| BssECI | CCNNGG | 5 cut(s) | 191, 359, 411, 687, 696 |
| BssMI | GATC | 4 cut(s) | 442, 640, 830, 1030 |
| BssNI | GRCGYC | 2 cut(s) | 33, 51 |
| BssT1I | CCWWGG | 3 cut(s) | 191, 411, 687 |
| Bst2UI | CCWGG | 3 cut(s) | 206, 361, 698 |
| Bst4CI | ACNGT | 4 cut(s) | 769, 931, 990, 1145 |
| BstACI | GRCGYC | 2 cut(s) | 33, 51 |
| BstBI | TTCGAA | 1 cut(s) | 344 |
| BstDEI | CTNAG | 2 cut(s) | 366, 534 |
| BstF5I | GGATG | 2 cut(s) | 85, 187 |
| BstFNI | CGCG | 3 cut(s) | 56, 77, 1090 |
| BstHHI | GCGC | 3 cut(s) | 77, 217, 1062 |
| BstKTI | GATC | 4 cut(s) | 445, 643, 833, 1033 |
| BstMAI | GTCTC | 5 cut(s) | 133, 151, 332, 697, 708 |
| BstMBI | GATC | 4 cut(s) | 442, 640, 830, 1030 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 50, 53, 72, 1019 |
| BstNI | CCWGG | 3 cut(s) | 206, 361, 698 |
| BstNSI | RCATGY | 2 cut(s) | 925, 1128 |
| BstSCI | CCNGG | 3 cut(s) | 204, 359, 696 |
| BstSLI | GKGCMC | 1 cut(s) | 1015 |
| BstUI | CGCG | 3 cut(s) | 56, 77, 1090 |
| BstV1I | GCAGC | 3 cut(s) | 31, 373, 657 |
| BstV2I | GAAGAC | 1 cut(s) | 284 |
| Bsu15I | ATCGAT | 1 cut(s) | 829 |
| BsuRI | GGCC | 1 cut(s) | 364 |
| BsuTUI | ATCGAT | 1 cut(s) | 829 |
| BtgZI | GCGATG | 1 cut(s) | 81 |
| BtsCI | GGATG | 2 cut(s) | 85, 187 |
| BtsIMutI | CAGTG | 4 cut(s) | 555, 738, 774, 986 |
| BveI | ACCTGC | 1 cut(s) | 297 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 3 cut(s) | 77, 217, 1062 |
| Cfr13I | GGNCC | 4 cut(s) | 106, 406, 605, 853 |
| ClaI | ATCGAT | 1 cut(s) | 829 |
| CseI | GACGC | 3 cut(s) | 59, 155, 1096 |
| CviAII | CATG | 4 cut(s) | 446, 674, 922, 1125 |
| DdeI | CTNAG | 2 cut(s) | 366, 534 |
| DpnI | GATC | 4 cut(s) | 444, 642, 832, 1032 |
| DpnII | GATC | 4 cut(s) | 442, 640, 830, 1030 |
| Ecl136II | GAGCTC | 1 cut(s) | 462 |
| Eco130I | CCWWGG | 3 cut(s) | 191, 411, 687 |
| Eco147I | AGGCCT | 1 cut(s) | 364 |
| Eco24I | GRGCYC | 1 cut(s) | 464 |
| Eco31I | GGTCTC | 1 cut(s) | 697 |
| Eco32I | GATATC | 1 cut(s) | 898 |
| Eco47I | GGWCC | 4 cut(s) | 106, 406, 605, 853 |
| Eco53kI | GAGCTC | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 2 cut(s) | 191, 869 |
| EcoICRI | GAGCTC | 1 cut(s) | 462 |
| EcoO109I | RGGNCCY | 1 cut(s) | 406 |
| EcoRII | CCWGG | 3 cut(s) | 204, 359, 696 |
| EcoRV | GATATC | 1 cut(s) | 898 |
| EcoT14I | CCWWGG | 3 cut(s) | 191, 411, 687 |
| EcoT38I | GRGCYC | 1 cut(s) | 464 |
| ErhI | CCWWGG | 3 cut(s) | 191, 411, 687 |
| Esp3I | CGTCTC | 2 cut(s) | 133, 151 |
| FaeI | CATG | 4 cut(s) | 449, 677, 925, 1128 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 873, 905 |
| FaqI | GGGAC | 5 cut(s) | 342, 392, 505, 591, 665 |
| FatI | CATG | 4 cut(s) | 445, 673, 921, 1124 |
| FauNDI | CATATG | 1 cut(s) | 1117 |
| FbaI | TGATCA | 3 cut(s) | 442, 640, 1030 |
| FblI | GTMKAC | 1 cut(s) | 918 |
| Fnu4HI | GCNGC | 5 cut(s) | 14, 45, 54, 387, 671 |
| FokI | GGATG | 2 cut(s) | 92, 174 |
| FriOI | GRGCYC | 1 cut(s) | 464 |
| Fsp4HI | GCNGC | 5 cut(s) | 14, 45, 54, 387, 671 |
| FspBI | CTAG | 1 cut(s) | 192 |
| GlaI | GCGC | 3 cut(s) | 76, 216, 1061 |
| GluI | GCNGC | 5 cut(s) | 14, 45, 54, 387, 671 |
| GsaI | CCCAGC | 1 cut(s) | 393 |
| GsuI | CTGGAG | 1 cut(s) | 38 |
| HaeIII | GGCC | 1 cut(s) | 364 |
| HgaI | GACGC | 3 cut(s) | 59, 155, 1096 |
| HhaI | GCGC | 3 cut(s) | 77, 217, 1062 |
| Hin1I | GRCGYC | 2 cut(s) | 33, 51 |
| Hin1II | CATG | 4 cut(s) | 449, 677, 925, 1128 |
| Hin6I | GCGC | 3 cut(s) | 75, 215, 1060 |
| HinP1I | GCGC | 3 cut(s) | 75, 215, 1060 |
| HincII | GTYRAC | 1 cut(s) | 618 |
| HindII | GTYRAC | 1 cut(s) | 618 |
| HindIII | AAGCTT | 2 cut(s) | 971, 1020 |
| HinfI | GANTC | 6 cut(s) | 175, 323, 346, 701, 728, 773 |
| Hpy166II | GTNNAC | 4 cut(s) | 618, 919, 927, 1013 |
| Hpy188I | TCNGA | 6 cut(s) | 171, 378, 466, 484, 755, 961 |
| Hpy188III | TCNNGA | 6 cut(s) | 37, 115, 181, 235, 446, 529 |
| Hpy8I | GTNNAC | 4 cut(s) | 618, 919, 927, 1013 |
| Hpy99I | CGWCG | 2 cut(s) | 53, 431 |
| HpyAV | CCTTC | 6 cut(s) | 34, 364, 388, 397, 811, 844 |
| HpyCH4III | ACNGT | 4 cut(s) | 769, 931, 990, 1145 |
| HpyCH4IV | ACGT | 3 cut(s) | 33, 429, 1009 |
| HpyCH4V | TGCA | 5 cut(s) | 673, 709, 1013, 1084, 1137 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 50, 53, 72, 1019 |
| HpyF3I | CTNAG | 2 cut(s) | 366, 534 |
| HpySE526I | ACGT | 3 cut(s) | 33, 429, 1009 |
| Hsp92I | GRCGYC | 2 cut(s) | 33, 51 |
| Hsp92II | CATG | 4 cut(s) | 449, 677, 925, 1128 |
| HspAI | GCGC | 3 cut(s) | 75, 215, 1060 |
| Ksp22I | TGATCA | 3 cut(s) | 442, 640, 1030 |
| Kzo9I | GATC | 4 cut(s) | 442, 640, 830, 1030 |
| LmnI | GCTCC | 3 cut(s) | 10, 144, 547 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 373, 657 |
| LweI | GCATC | 1 cut(s) | 1071 |
| MaeI | CTAG | 1 cut(s) | 192 |
| MaeII | ACGT | 3 cut(s) | 33, 429, 1009 |
| MaeIII | GTNAC | 3 cut(s) | 34, 763, 1120 |
| MalI | GATC | 4 cut(s) | 444, 642, 832, 1032 |
| MboI | GATC | 4 cut(s) | 442, 640, 830, 1030 |
| MboII | GAAGA | 8 cut(s) | 184, 208, 277, 289, 310, 601, 871, 878 |
| MhlI | GDGCHC | 2 cut(s) | 464, 1015 |
| MluCI | AATT | 4 cut(s) | 118, 243, 719, 1034 |
| MlyI | GAGTC | 2 cut(s) | 710, 782 |
| MmeI | TCCRAC | 2 cut(s) | 84, 1127 |
| MroXI | GAANNNNTTC | 1 cut(s) | 322 |
| MseI | TTAA | 3 cut(s) | 432, 453, 843 |
| MspR9I | CCNGG | 3 cut(s) | 206, 361, 698 |
| Mva1269I | GAATGC | 1 cut(s) | 672 |
| MvaI | CCWGG | 3 cut(s) | 206, 361, 698 |
| MvnI | CGCG | 3 cut(s) | 56, 77, 1090 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 50, 53, 72, 1019 |
| NdeI | CATATG | 1 cut(s) | 1117 |
| NdeII | GATC | 4 cut(s) | 442, 640, 830, 1030 |
| NlaIII | CATG | 4 cut(s) | 449, 677, 925, 1128 |
| NlaIV | GGNNCC | 4 cut(s) | 408, 607, 802, 811 |
| NmuCI | GTSAC | 1 cut(s) | 34 |
| NspI | RCATGY | 2 cut(s) | 925, 1128 |
| NspV | TTCGAA | 1 cut(s) | 344 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PceI | AGGCCT | 1 cut(s) | 364 |
| PciI | ACATGT | 2 cut(s) | 921, 1124 |
| PctI | GAATGC | 1 cut(s) | 672 |
| PdmI | GAANNNNTTC | 1 cut(s) | 322 |
| PfeI | GAWTC | 4 cut(s) | 175, 323, 346, 728 |
| PkrI | GCNGC | 5 cut(s) | 15, 46, 55, 388, 672 |
| PleI | GAGTC | 2 cut(s) | 709, 781 |
| PpsI | GAGTC | 2 cut(s) | 709, 781 |
| PpuMI | RGGWCCY | 1 cut(s) | 406 |
| PscI | ACATGT | 2 cut(s) | 921, 1124 |
| Psp124BI | GAGCTC | 1 cut(s) | 464 |
| Psp5II | RGGWCCY | 1 cut(s) | 406 |
| Psp6I | CCWGG | 3 cut(s) | 204, 359, 696 |
| PspFI | CCCAGC | 1 cut(s) | 389 |
| PspGI | CCWGG | 3 cut(s) | 204, 359, 696 |
| PspN4I | GGNNCC | 4 cut(s) | 408, 607, 802, 811 |
| PspPI | GGNCC | 4 cut(s) | 106, 406, 605, 853 |
| PspPPI | RGGWCCY | 1 cut(s) | 406 |
| SacI | GAGCTC | 1 cut(s) | 464 |
| SaqAI | TTAA | 3 cut(s) | 432, 453, 843 |
| SatI | GCNGC | 5 cut(s) | 14, 45, 54, 387, 671 |
| Sau3AI | GATC | 4 cut(s) | 442, 640, 830, 1030 |
| Sau96I | GGNCC | 4 cut(s) | 106, 406, 605, 853 |
| SchI | GAGTC | 2 cut(s) | 710, 782 |
| ScrFI | CCNGG | 3 cut(s) | 206, 361, 698 |
| SduI | GDGCHC | 2 cut(s) | 464, 1015 |
| SfaNI | GCATC | 1 cut(s) | 1071 |
| SfuI | TTCGAA | 1 cut(s) | 344 |
| SinI | GGWCC | 4 cut(s) | 106, 406, 605, 853 |
| SmlI | CTYRAG | 4 cut(s) | 95, 113, 218, 974 |
| SmoI | CTYRAG | 4 cut(s) | 95, 113, 218, 974 |
| Sse9I | AATT | 4 cut(s) | 118, 243, 719, 1034 |
| SseBI | AGGCCT | 1 cut(s) | 364 |
| SsiI | CCGC | 4 cut(s) | 54, 77, 109, 1090 |
| SspMI | CTAG | 1 cut(s) | 192 |
| SstI | GAGCTC | 1 cut(s) | 464 |
| StuI | AGGCCT | 1 cut(s) | 364 |
| StyD4I | CCNGG | 3 cut(s) | 204, 359, 696 |
| StyI | CCWWGG | 3 cut(s) | 191, 411, 687 |
| TaaI | ACNGT | 4 cut(s) | 769, 931, 990, 1145 |
| TaiI | ACGT | 3 cut(s) | 36, 432, 1012 |
| TaqI | TCGA | 4 cut(s) | 344, 458, 829, 1048 |
| TasI | AATT | 4 cut(s) | 118, 243, 719, 1034 |
| TauI | GCSGC | 1 cut(s) | 56 |
| TfiI | GAWTC | 4 cut(s) | 175, 323, 346, 728 |
| Tru1I | TTAA | 3 cut(s) | 432, 453, 843 |
| Tru9I | TTAA | 3 cut(s) | 432, 453, 843 |
| TscAI | CASTG | 4 cut(s) | 555, 738, 774, 993 |
| TseFI | GTSAC | 1 cut(s) | 34 |
| TseI | GCWGC | 4 cut(s) | 13, 44, 386, 670 |
| Tsp45I | GTSAC | 1 cut(s) | 34 |
| TspDTI | ATGAA | 5 cut(s) | 270, 278, 299, 729, 1116 |
| TspGWI | ACGGA | 2 cut(s) | 512, 534 |
| TspRI | CASTG | 4 cut(s) | 555, 738, 774, 993 |
| VneI | GTGCAC | 1 cut(s) | 1011 |
| VpaK11BI | GGWCC | 4 cut(s) | 106, 406, 605, 853 |
| XapI | RAATTY | 2 cut(s) | 118, 719 |
| XceI | RCATGY | 2 cut(s) | 925, 1128 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 934 |
| XmaJI | CCTAGG | 1 cut(s) | 191 |
| XmiI | GTMKAC | 1 cut(s) | 918 |
| XmnI | GAANNNNTTC | 1 cut(s) | 322 |
| XspI | CTAG | 1 cut(s) | 192 |
| ZraI | GACGTC | 1 cut(s) | 34 |