Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011422

Physical Location & Seq

Genomic Coordinates Forward (+)

27226176 .. 27228524

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGAAGGAGCTGTTGGAGTTGTTCGAAGCGGTGAAGAAATCGGCGGACGCCGCCACGTCTTGTGACGGAGGAGCCGAGGAAAGCCAATGCCTTGATGCCTTGGAGCAGCTCAAGAATTTTCCCGTCACTTATCAACTCCTCATCTCAACCCAAGTTGGAAAGCGTCTTCGACATCTCACAAAACATCCCAGAAAGAAAATCCAGACATTTTCTTCTGCCCTGATTGATACATGGAAAGGGATTGTTATCAAGGAAGCAAACAAAGATGCGAAAAACGGCAACTTGGAAAGAATAGACTCTCTAAAACGTGCGTCTCCAAGTGCGGAGAGTCCCAGGGCTGAGAAGGTTCAGAAGACATCTGCTGTGAAGGTAGAGAAGGTTTCAAAGGCGGAACCTGTTGAGATTAAGAAGGTTGATCGAGGTGTTAAACCAAGCTCTGACAAAGCTTATAGTTCTGAAACTGTCAAGACAGAGAGAAAGGTTCAAAATGCTAATGCTGTGAAGACAGAGAAAGCCGCTTCAGCAGAGAGTGTTAAGGTTGAAAAGATAGCCAAAGAAGTGAAGAAACCGGCACTGAACTCCTCTGCTCCCCCAAAGTTAACATCTATGATCAAGTCTAATGATACAGCACGGGACAGAGTAAGGGGAATGCTGCACGAGGCTTTGTCCAAGGTTTCTCAGGAGGCTGACGAAAGATTTGCGGATTATGTGAATGCATCTGATCCTATTAGAGTTGCTGTGACTCTGGAATCTGTGCTCTTTGAGCACTGGGGTGGTTCCACCGGTGCCCAGAAGGCAAAGTATCGATCTTTAATCTTCAACCTCAAGGACCAAAAGAACCCAGATTTCCGCAGAAAGGTTCTGCTCGGAGACATCGAGGCAGAGAGGCTGGTAGACATGTCAACGGCGGAAATGGCAAGCGATCAGAGGCAGGAGGAGAACAAAAAGCTTGAACAAAAAGCCTTGTTTGAGTGTGAGCGTGGAGGAGCGCCAAAAGCTACAACCGATCAATTCAAATGCGGTCGATGCGGGCACAGGAAGACCACCTATTACCAAATGCAGACCAGGAGTGCCGATGAACCTATGACAACATATGTAACATGTGTAAACTGCAACAACCGTTGGAAGTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032784 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26 TFIIS_C TFIIS_M

Protein Analysis

380

Amino Acids

42.38

Weight (kDa)

9.29

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38560
fragaria_vesca	FvH4_7g26060 FvH4_7g26060 FvH4_7g26060
malus_domestica	MD01G1169100.v1.1 MD07G1235000.v1.1
prunus_persica	Prupe.2G265300_v2.0.a1
pyrus_communis	pycom01g18180 pycom07g21250
rosa_chinensis	RchiOBHm_Chr1g0372471
rosa_laevigata	RLG00000026896
rosa_multiflora	Rmu_sc0005410.1_g000001 Rmu_sc0011709.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284880
rosa_rugosa	Rorug01G0372200
rosa_samantha	Rh1AG380700 Rh1BG344300 Rh1CG357700 Rh1DG375500
rosa_wichuraiana	Rw1G033490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	788
AccI	GTMKAC	1 cut(s)	897
AclWI	GGATC	1 cut(s)	719
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	859
AflIII	ACRYGT	2 cut(s)	900, 1103
AgeI	ACCGGT	1 cut(s)	785
AgsI	TTSAA	6 cut(s)	387, 488, 545, 823, 956, 1018
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	335, 1067
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	774
AluBI	AGCT	6 cut(s)	13, 112, 438, 449, 952, 1001
AluI	AGCT	6 cut(s)	13, 112, 438, 449, 952, 1001
Alw21I	GWGCWC	2 cut(s)	762, 771
Alw26I	GTCTC	2 cut(s)	321, 867
AlwI	GGATC	1 cut(s)	719
ApeKI	GCWGC	2 cut(s)	109, 655
ApoI	RAATTY	1 cut(s)	118
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AsiGI	ACCGGT	1 cut(s)	785
AspLEI	GCGC	1 cut(s)	994
AspS9I	GGNCC	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	2 cut(s)	793, 1038
BanI	GGYRCC	1 cut(s)	788
BauI	CACGAG	1 cut(s)	659
BbsI	GAAGAC	4 cut(s)	161, 362, 512, 1049
Bbv12I	GWGCWC	2 cut(s)	762, 771
BbvI	GCAGC	2 cut(s)	121, 642
BceAI	ACGGC	2 cut(s)	295, 924
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BciT130I	CCWGG	2 cut(s)	337, 1069
BclI	TGATCA	1 cut(s)	612
BcoDI	GTCTC	2 cut(s)	321, 867
BfoI	RGCGCY	1 cut(s)	995
BglI	GCCNNNNNGGC	1 cut(s)	797
BisI	GCNGC	4 cut(s)	54, 110, 519, 656
BlsI	GCNGC	4 cut(s)	55, 111, 520, 657
Bme1390I	CCNGG	2 cut(s)	337, 1069
Bme18I	GGWCC	1 cut(s)	832
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	4 cut(s)	76, 396, 781, 790
BmrFI	CCNGG	2 cut(s)	337, 1069
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	4 cut(s)	88, 259, 728, 1019
BmuI	ACTGGG	1 cut(s)	781
BpiI	GAAGAC	4 cut(s)	161, 362, 512, 1049
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	98, 812
Bsa29I	ATCGAT	1 cut(s)	808
BsaBI	GATNNNNATC	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	5 cut(s)	78, 102, 335, 336, 672
BsaWI	WCCGGW	1 cut(s)	785
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse118I	RCCGGY	2 cut(s)	571, 785
Bse1I	ACTGG	1 cut(s)	776
Bse8I	GATNNNNATC	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	337, 1069
BseCI	ATCGAT	1 cut(s)	808
BseDI	CCNNGG	5 cut(s)	78, 102, 335, 336, 672
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMII	CTCAG	2 cut(s)	333, 695
BseNI	ACTGG	1 cut(s)	776
BseRI	GAGGAG	5 cut(s)	87, 131, 574, 953, 1002
BseSI	GKGCMC	2 cut(s)	793, 1038
BseXI	GCAGC	2 cut(s)	121, 642
BsgI	GTGCAG	1 cut(s)	641
Bsh1285I	CGRYCG	1 cut(s)	1027
BshNI	GGYRCC	1 cut(s)	788
BshTI	ACCGGT	1 cut(s)	785
BshVI	ATCGAT	1 cut(s)	808
BsiEI	CGRYCG	1 cut(s)	1027
BsiHKAI	GWGCWC	2 cut(s)	762, 771
BsiSI	CCGG	2 cut(s)	572, 786
BslFI	GGGAC	2 cut(s)	318, 650
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	2 cut(s)	321, 867
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	318, 650
BsmI	GAATGC	2 cut(s)	657, 721
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	4 cut(s)	762, 771, 793, 1038
Bsp143I	GATC	6 cut(s)	418, 612, 724, 809, 925, 1009
BspCNI	CTCAG	2 cut(s)	334, 694
BspDI	ATCGAT	1 cut(s)	808
BspLI	GGNNCC	4 cut(s)	76, 396, 781, 790
BspPI	GGATC	1 cut(s)	719
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	788
BsrFI	RCCGGY	2 cut(s)	571, 785
BsrI	ACTGG	1 cut(s)	776
BssAI	RCCGGY	2 cut(s)	571, 785
BssECI	CCNNGG	5 cut(s)	78, 102, 335, 336, 672
BssMI	GATC	6 cut(s)	418, 612, 724, 809, 925, 1009
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	659
BssT1I	CCWWGG	2 cut(s)	102, 672
Bst2BI	CACGAG	1 cut(s)	659
Bst2UI	CCWGG	2 cut(s)	337, 1069
Bst4CI	ACNGT	2 cut(s)	466, 1124
BstACI	GRCGYC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	922, 1034
BstDEI	CTNAG	2 cut(s)	342, 681
BstF5I	GGATG	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	995
BstHHI	GCGC	1 cut(s)	994
BstKTI	GATC	6 cut(s)	421, 615, 727, 812, 928, 1012
BstMAI	GTCTC	2 cut(s)	321, 867
BstMBI	GATC	6 cut(s)	418, 612, 724, 809, 925, 1009
BstMCI	CGRYCG	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 524, 766, 797, 917, 998, 1029
BstNI	CCWGG	2 cut(s)	337, 1069
BstNSI	RCATGY	2 cut(s)	904, 1107
BstSCI	CCNGG	2 cut(s)	335, 1067
BstSLI	GKGCMC	2 cut(s)	793, 1038
BstV1I	GCAGC	2 cut(s)	121, 642
BstV2I	GAAGAC	4 cut(s)	161, 362, 512, 1049
Bsu15I	ATCGAT	1 cut(s)	808
BsuTUI	ATCGAT	1 cut(s)	808
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	575, 769
Cac8I	GCNNGC	2 cut(s)	922, 1034
CfoI	GCGC	1 cut(s)	994
Cfr10I	RCCGGY	2 cut(s)	571, 785
Cfr13I	GGNCC	1 cut(s)	832
ClaI	ATCGAT	1 cut(s)	808
CseI	GACGC	3 cut(s)	59, 155, 303
CspAI	ACCGGT	1 cut(s)	785
CviAII	CATG	3 cut(s)	234, 901, 1104
DdeI	CTNAG	2 cut(s)	342, 681
DpnI	GATC	6 cut(s)	420, 614, 726, 811, 927, 1011
DpnII	GATC	6 cut(s)	418, 612, 724, 809, 925, 1009
EciI	GGCGGA	3 cut(s)	62, 407, 926
Eco130I	CCWWGG	2 cut(s)	102, 672
Eco47I	GGWCC	1 cut(s)	832
Eco57I	CTGAAG	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	335, 1067
EcoT14I	CCWWGG	2 cut(s)	102, 672
EcoT22I	ATGCAT	1 cut(s)	721
ErhI	CCWWGG	2 cut(s)	102, 672
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	3 cut(s)	237, 904, 1107
FaiI	YATR	9 cut(s)	235, 453, 611, 711, 902, 1088, 1096, 1098, 1105
FaqI	GGGAC	2 cut(s)	318, 650
FatI	CATG	3 cut(s)	233, 900, 1103
FauI	CCCGC	1 cut(s)	1025
FauNDI	CATATG	1 cut(s)	1096
FbaI	TGATCA	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	4 cut(s)	54, 110, 519, 656
FokI	GGATG	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	54, 110, 519, 656
GlaI	GCGC	1 cut(s)	993
GluI	GCNGC	4 cut(s)	54, 110, 519, 656
HaeII	RGCGCY	1 cut(s)	995
HapII	CCGG	2 cut(s)	572, 786
HgaI	GACGC	3 cut(s)	59, 155, 303
HhaI	GCGC	1 cut(s)	994
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	237, 904, 1107
Hin6I	GCGC	1 cut(s)	992
HinP1I	GCGC	1 cut(s)	992
HincII	GTYRAC	2 cut(s)	603, 906
HindII	GTYRAC	2 cut(s)	603, 906
HindIII	AAGCTT	2 cut(s)	447, 950
HinfI	GANTC	4 cut(s)	299, 331, 745, 752
HpaI	GTTAAC	1 cut(s)	603
HpaII	CCGG	2 cut(s)	572, 786
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	603, 898, 906, 1111
Hpy188I	TCNGA	6 cut(s)	354, 442, 460, 724, 872, 930
Hpy188III	TCNNGA	5 cut(s)	115, 205, 469, 683, 749
Hpy8I	GTNNAC	4 cut(s)	603, 898, 906, 1111
HpyAV	CCTTC	5 cut(s)	340, 364, 373, 406, 790
HpyCH4III	ACNGT	2 cut(s)	466, 1124
HpyCH4IV	ACGT	2 cut(s)	59, 310
HpyCH4V	TGCA	4 cut(s)	658, 719, 1063, 1116
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 524, 766, 797, 917, 998, 1029
HpyF3I	CTNAG	2 cut(s)	342, 681
HpySE526I	ACGT	2 cut(s)	59, 310
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	237, 904, 1107
HspAI	GCGC	1 cut(s)	992
Ksp22I	TGATCA	1 cut(s)	612
KspAI	GTTAAC	1 cut(s)	603
Kzo9I	GATC	6 cut(s)	418, 612, 724, 809, 925, 1009
LmnI	GCTCC	5 cut(s)	10, 74, 106, 595, 989
Lsp1109I	GCAGC	2 cut(s)	121, 642
LweI	GCATC	4 cut(s)	88, 259, 728, 1019
MaeII	ACGT	2 cut(s)	59, 310
MaeIII	GTNAC	4 cut(s)	65, 127, 742, 1099
MalI	GATC	6 cut(s)	420, 614, 726, 811, 927, 1011
MboI	GATC	6 cut(s)	418, 612, 724, 809, 925, 1009
MboII	GAAGA	8 cut(s)	49, 161, 207, 367, 517, 577, 811, 1054
MhlI	GDGCHC	4 cut(s)	762, 771, 793, 1038
MluCI	AATT	2 cut(s)	118, 1013
MlyI	GAGTC	3 cut(s)	293, 340, 739
MmeI	TCCRAC	2 cut(s)	139, 1106
Mph1103I	ATGCAT	1 cut(s)	721
MseI	TTAA	5 cut(s)	408, 429, 537, 602, 815
MslI	CAYNNNNRTG	1 cut(s)	774
MspI	CCGG	2 cut(s)	572, 786
MspR9I	CCNGG	2 cut(s)	337, 1069
Mva1269I	GAATGC	2 cut(s)	657, 721
MvaI	CCWGG	2 cut(s)	337, 1069
MwoI	GCNNNNNNNGC	7 cut(s)	53, 524, 766, 797, 917, 998, 1029
NdeI	CATATG	1 cut(s)	1096
NdeII	GATC	6 cut(s)	418, 612, 724, 809, 925, 1009
NlaIII	CATG	3 cut(s)	237, 904, 1107
NlaIV	GGNNCC	4 cut(s)	76, 396, 781, 790
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	3 cut(s)	65, 127, 742
NsiI	ATGCAT	1 cut(s)	721
NspI	RCATGY	2 cut(s)	904, 1107
NspV	TTCGAA	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	774
PasI	CCCWGGG	1 cut(s)	336
PciI	ACATGT	2 cut(s)	900, 1103
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 876
PctI	GAATGC	2 cut(s)	657, 721
PfeI	GAWTC	1 cut(s)	752
PinAI	ACCGGT	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	55, 111, 520, 657
PleI	GAGTC	3 cut(s)	293, 339, 739
PpsI	GAGTC	3 cut(s)	293, 339, 739
PscI	ACATGT	2 cut(s)	900, 1103
Psp6I	CCWGG	2 cut(s)	335, 1067
PspGI	CCWGG	2 cut(s)	335, 1067
PspN4I	GGNNCC	4 cut(s)	76, 396, 781, 790
PspPI	GGNCC	1 cut(s)	832
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	5 cut(s)	408, 429, 537, 602, 815
SatI	GCNGC	4 cut(s)	54, 110, 519, 656
Sau3AI	GATC	6 cut(s)	418, 612, 724, 809, 925, 1009
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	3 cut(s)	293, 340, 739
ScrFI	CCNGG	2 cut(s)	337, 1069
SduI	GDGCHC	4 cut(s)	762, 771, 793, 1038
SfaNI	GCATC	4 cut(s)	88, 259, 728, 1019
SfuI	TTCGAA	1 cut(s)	27
SgrAI	CRCCGGYG	1 cut(s)	785
SinI	GGWCC	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	2 cut(s)	113, 827
SmoI	CTYRAG	2 cut(s)	113, 827
Sse9I	AATT	2 cut(s)	118, 1013
StyD4I	CCNGG	2 cut(s)	335, 1067
StyI	CCWWGG	2 cut(s)	102, 672
TaaI	ACNGT	2 cut(s)	466, 1124
TaiI	ACGT	2 cut(s)	62, 313
TaqI	TCGA	6 cut(s)	27, 172, 421, 808, 879, 1027
TasI	AATT	2 cut(s)	118, 1013
TauI	GCSGC	2 cut(s)	56, 521
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	5 cut(s)	408, 429, 537, 602, 815
Tru9I	TTAA	5 cut(s)	408, 429, 537, 602, 815
TscAI	CASTG	2 cut(s)	582, 776
TseFI	GTSAC	3 cut(s)	65, 127, 742
TseI	GCWGC	2 cut(s)	109, 655
Tsp45I	GTSAC	3 cut(s)	65, 127, 742
TspDTI	ATGAA	1 cut(s)	1095
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	582, 776
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	2 cut(s)	904, 1107
XmiI	GTMKAC	1 cut(s)	897
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.