Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005410.1

Orthogroup ID

OG0011422

Physical Location & Seq

Genomic Coordinates Forward (+)

38 .. 940

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005410.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggaatcatggaagcaaattgtcattgaggaaacatcaaaaaacgatgtgaagaatggcaggtatgaaagaaaagattcgctaaagcgtgagtcaaatcccaatagtcccaggcctcagaagattcagaaaactgctgctgtgaaggttgagaaggtccccaaggctgaacagggtggcattaagaaggttgatcgtgatgttaaaccaagctcagagaaagcatatagttctgaaagtgggacaacggatagtaaggttgaaaatcataatgctgtcaagactgagaaagcagataatgtcaaggttgaaaaagtagccagagaagtgaagaaacctgtgtctggtcccccaatgttgacatctataccaaagtctaatgatcaggcaagggacaaagtaaggggaatgctgcatgaggctttgtccaaggtttcccaggagtctgaggctaatgaaagatttatggattcagtgaatgcatgtgaccctattagagttgctgttacagtggagtctgtgctgtttgagaactggggtggttccaatgggtcccagaaggccaagtaccgatcactaatttttaacctgaaggaccaaaagaacccagattttcgcagaaaagttcttcttggagatatcgaggcagagaggcttgtagacatgtccacagctgaaatggcaagtgatgagaggcaatcagagaataaaaagctcgaagaaaaggcattgtttgagtgtgagcgtggacttgcacaaacggcttcaactgatcaattcaaatgtggtcgatgtgggaaacgcaagaccacctactaccagatgcagacgcggagtgccgatgaacctatgacaacatatgtaacatgtgtaaactgcaataaccgctggaagttctgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032784 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26 TFIIS_C TFIIS_M

Protein Analysis

300

Amino Acids

33.94

Weight (kDa)

9.13

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38560
fragaria_vesca	FvH4_7g26060 FvH4_7g26060 FvH4_7g26060
malus_domestica	MD01G1169100.v1.1 MD07G1235000.v1.1
prunus_persica	Prupe.2G265300_v2.0.a1
pyrus_communis	pycom01g18180 pycom07g21250
rosa_chinensis	RchiOBHm_Chr1g0372471
rosa_laevigata	RLG00000026896
rosa_multiflora	Rmu_sc0005410.1_g000001 Rmu_sc0011709.1_g000008
rosa_roxburghii	Rroxscaffold_4G00284880
rosa_rugosa	Rorug01G0372200
rosa_samantha	Rh1AG380700 Rh1BG344300 Rh1CG357700 Rh1DG375500
rosa_wichuraiana	Rw1G033490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	1 cut(s)	832
AciI	CCGC	2 cut(s)	832, 886
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	344
AflIII	ACRYGT	2 cut(s)	663, 866
AgsI	TTSAA	4 cut(s)	263, 311, 768, 781
AjnI	CCWGG	2 cut(s)	110, 438
AluBI	AGCT	3 cut(s)	213, 674, 715
AluI	AGCT	3 cut(s)	213, 674, 715
AoxI	GGCC	2 cut(s)	113, 561
ApeKI	GCWGC	2 cut(s)	137, 412
Asp700I	GAANNNNTTC	1 cut(s)	76
AspS9I	GGNCC	4 cut(s)	157, 347, 552, 595
AvaII	GGWCC	4 cut(s)	157, 347, 552, 595
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BbvI	GCAGC	2 cut(s)	124, 399
BceAI	ACGGC	1 cut(s)	777
BciT130I	CCWGG	2 cut(s)	112, 440
BclI	TGATCA	2 cut(s)	382, 772
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	138, 413
BlsI	GCNGC	2 cut(s)	139, 414
Bme1390I	CCNGG	2 cut(s)	112, 440
Bme18I	GGWCC	4 cut(s)	157, 347, 552, 595
BmgT120I	GGNCC	4 cut(s)	157, 347, 552, 595
BmiI	GGNNCC	5 cut(s)	159, 349, 544, 553, 554
BmrFI	CCNGG	2 cut(s)	112, 440
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	813
BmuI	ACTGGG	1 cut(s)	544
BsaJI	CCNNGG	4 cut(s)	110, 162, 429, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	112, 440
BseDI	CCNNGG	4 cut(s)	110, 162, 429, 438
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	4 cut(s)	131, 228, 276, 438
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	124, 399
Bsh1236I	CGCG	1 cut(s)	832
BshFI	GGCC	2 cut(s)	115, 563
BslFI	GGGAC	6 cut(s)	93, 143, 256, 333, 407, 538
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmFI	GGGAC	6 cut(s)	93, 143, 256, 333, 407, 538
BsmI	GAATGC	2 cut(s)	414, 484
BsnI	GGCC	2 cut(s)	115, 563
Bsp143I	GATC	4 cut(s)	193, 382, 572, 772
BspACI	CCGC	2 cut(s)	832, 886
BspANI	GGCC	2 cut(s)	115, 563
BspCNI	CTCAG	4 cut(s)	130, 227, 277, 439
BspFNI	CGCG	1 cut(s)	832
BspLI	GGNNCC	5 cut(s)	159, 349, 544, 553, 554
BspMI	ACCTGC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	4 cut(s)	110, 162, 429, 438
BssMI	GATC	4 cut(s)	193, 382, 572, 772
BssT1I	CCWWGG	2 cut(s)	162, 429
Bst2UI	CCWGG	2 cut(s)	112, 440
Bst4CI	ACNGT	1 cut(s)	511
BstDEI	CTNAG	4 cut(s)	117, 214, 285, 447
BstFNI	CGCG	1 cut(s)	832
BstKTI	GATC	4 cut(s)	196, 385, 575, 775
BstMBI	GATC	4 cut(s)	193, 382, 572, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	680, 761, 885
BstNI	CCWGG	2 cut(s)	112, 440
BstNSI	RCATGY	3 cut(s)	486, 667, 870
BstSCI	CCNGG	2 cut(s)	110, 438
BstUI	CGCG	1 cut(s)	832
BstV1I	GCAGC	2 cut(s)	124, 399
BsuRI	GGCC	2 cut(s)	115, 563
BtsIMutI	CAGTG	2 cut(s)	480, 516
BveI	ACCTGC	1 cut(s)	51
Cfr13I	GGNCC	4 cut(s)	157, 347, 552, 595
CseI	GACGC	1 cut(s)	838
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	5 cut(s)	9, 416, 483, 664, 867
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	4 cut(s)	117, 214, 285, 447
DpnI	GATC	4 cut(s)	195, 384, 574, 774
DpnII	GATC	4 cut(s)	193, 382, 572, 772
Eco130I	CCWWGG	2 cut(s)	162, 429
Eco147I	AGGCCT	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	4 cut(s)	157, 347, 552, 595
Eco57I	CTGAAG	1 cut(s)	611
EcoO109I	RGGNCCY	2 cut(s)	157, 552
EcoRII	CCWGG	2 cut(s)	110, 438
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	2 cut(s)	162, 429
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	2 cut(s)	162, 429
FaeI	CATG	5 cut(s)	12, 419, 486, 667, 870
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FaqI	GGGAC	6 cut(s)	93, 143, 256, 333, 407, 538
FatI	CATG	5 cut(s)	8, 415, 482, 663, 866
FauNDI	CATATG	1 cut(s)	859
FbaI	TGATCA	2 cut(s)	382, 772
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	2 cut(s)	138, 413
Fsp4HI	GCNGC	2 cut(s)	138, 413
GluI	GCNGC	2 cut(s)	138, 413
HaeIII	GGCC	2 cut(s)	115, 563
HgaI	GACGC	1 cut(s)	838
Hin1II	CATG	5 cut(s)	12, 419, 486, 667, 870
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	7 cut(s)	5, 77, 92, 124, 443, 470, 515
Hpy166II	GTNNAC	5 cut(s)	360, 661, 669, 749, 874
Hpy188I	TCNGA	6 cut(s)	120, 129, 217, 235, 448, 703
Hpy188III	TCNNGA	2 cut(s)	197, 280
Hpy8I	GTNNAC	5 cut(s)	360, 661, 669, 749, 874
HpyAV	CCTTC	5 cut(s)	139, 148, 181, 553, 586
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	5 cut(s)	415, 482, 755, 826, 879
HpyF10VI	GCNNNNNNNGC	3 cut(s)	680, 761, 885
HpyF3I	CTNAG	4 cut(s)	117, 214, 285, 447
Hsp92II	CATG	5 cut(s)	12, 419, 486, 667, 870
KflI	GGGWCCC	1 cut(s)	552
Ksp22I	TGATCA	2 cut(s)	382, 772
Kzo9I	GATC	4 cut(s)	193, 382, 572, 772
Lsp1109I	GCAGC	2 cut(s)	124, 399
LweI	GCATC	1 cut(s)	813
MaeIII	GTNAC	3 cut(s)	485, 505, 862
MalI	GATC	4 cut(s)	195, 384, 574, 774
MboI	GATC	4 cut(s)	193, 382, 572, 772
MboII	GAAGA	5 cut(s)	64, 133, 343, 620, 731
MluCI	AATT	3 cut(s)	18, 579, 776
MlyI	GAGTC	3 cut(s)	101, 452, 524
MnlI	CCTC	7 cut(s)	22, 126, 412, 442, 637, 645, 687
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	3 cut(s)	183, 204, 585
MspA1I	CMGCKG	2 cut(s)	674, 888
MspR9I	CCNGG	2 cut(s)	112, 440
Mva1269I	GAATGC	2 cut(s)	414, 484
MvaI	CCWGG	2 cut(s)	112, 440
MvnI	CGCG	1 cut(s)	832
MwoI	GCNNNNNNNGC	3 cut(s)	680, 761, 885
NdeI	CATATG	1 cut(s)	859
NdeII	GATC	4 cut(s)	193, 382, 572, 772
NlaIII	CATG	5 cut(s)	12, 419, 486, 667, 870
NlaIV	GGNNCC	5 cut(s)	159, 349, 544, 553, 554
NmuCI	GTSAC	1 cut(s)	485
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	3 cut(s)	486, 667, 870
PceI	AGGCCT	1 cut(s)	115
PciI	ACATGT	2 cut(s)	663, 866
PctI	GAATGC	2 cut(s)	414, 484
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	4 cut(s)	5, 77, 124, 470
PkrI	GCNGC	2 cut(s)	139, 414
PleI	GAGTC	3 cut(s)	100, 451, 523
PpsI	GAGTC	3 cut(s)	100, 451, 523
PpuMI	RGGWCCY	2 cut(s)	157, 552
PscI	ACATGT	2 cut(s)	663, 866
Psp5II	RGGWCCY	2 cut(s)	157, 552
Psp6I	CCWGG	2 cut(s)	110, 438
PspGI	CCWGG	2 cut(s)	110, 438
PspN4I	GGNNCC	5 cut(s)	159, 349, 544, 553, 554
PspPI	GGNCC	4 cut(s)	157, 347, 552, 595
PspPPI	RGGWCCY	2 cut(s)	157, 552
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SaqAI	TTAA	3 cut(s)	183, 204, 585
SatI	GCNGC	2 cut(s)	138, 413
Sau3AI	GATC	4 cut(s)	193, 382, 572, 772
Sau96I	GGNCC	4 cut(s)	157, 347, 552, 595
SchI	GAGTC	3 cut(s)	101, 452, 524
ScrFI	CCNGG	2 cut(s)	112, 440
SfaNI	GCATC	1 cut(s)	813
SinI	GGWCC	4 cut(s)	157, 347, 552, 595
Sse9I	AATT	3 cut(s)	18, 579, 776
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	832, 886
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	110, 438
StyI	CCWWGG	2 cut(s)	162, 429
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	3 cut(s)	642, 717, 790
TasI	AATT	3 cut(s)	18, 579, 776
TfiI	GAWTC	4 cut(s)	5, 77, 124, 470
Tru1I	TTAA	3 cut(s)	183, 204, 585
Tru9I	TTAA	3 cut(s)	183, 204, 585
TscAI	CASTG	2 cut(s)	480, 516
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	137, 412
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	81, 471, 858
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	480, 516
VpaK11BI	GGWCC	4 cut(s)	157, 347, 552, 595
XceI	RCATGY	3 cut(s)	486, 667, 870
XcmI	CCANNNNNNNNNTGG	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	76
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.