Rroxscaffold_4G00284880

Transcription elongation factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
6412180 .. 6415339
3160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284880.1

Sequence Viewer

Length: 1086 bp
ATGGAGAAGGAGCTGTTGGAGGTGTTTGACGACGTGACGAAGGCGGCCGACGCCGCGAAATCGTGCGACGGTGGCGCCGAGGAAAGTCTCTGTCTTGAGGCCTTGGATCGCCTTAACAATTTTCCCGTCTCTTATCAGCTTCTCGTCTCAACCCAAGTTGGGAAGCGTCTTAAGAATCTCACAAAACATCCTAGAAAGAAAATCCAGACTTTTGCGCTTAGCCTGATGGAATCATGGAAGCAAATTGTCATTGAGGAAACATCAAAAAATGATGTGAAGAATGGCAGGTATGAAAGAAAAGATTCGCTAAAGCGTGAGTCAAATCCCAATAGTCCCAGGCCTGTGAAGATTCAGAAAACTGCTGCTGACAAGGTTGAGAAGGCCCCCAAGGCTGAACAGGGTGACATTAAGAAGGTTGATCGTGATGTTAAACCAAGTTCAGAGAAAGCATATAGTTCTGAAAGTGGGACAACGGATAGTAAGGTTGAAAATCATAATGTTGTCAAGACTGAGAAAGCTCCCTTGGCGGATAATGTCAAGGTTGAAAAAGTAGCCAGAGAAGTGAAGAAACCTGTGTCTGGTCCCCCAAAGTTGACATCTATACCAAAGTCTAATGATCAGGCAAGGGACAGAGTAAGGGGAATGCTGCATGAGGCTTTGTCCAAGGTTTCCCAGGAGTCTGAGGCTAATGAAAGATTTGTGGATTCAGTGAATGCATGCGACCCTATTAGAGTTGCTGTTACAGTGGAGTCTGTGCTGTTTGAGAACTGGGGTGGTTCCAATGGGTCCCAGAAGGCTAAGTACCGATCACTAATTTTTAACCTGAAGGACCAAAAGAACCCAGATTTTCGCAGAAAAGTTCTTCTTGGAGATATCAAGGCAGAGAGGCTTGTAGACATGTCCACAGCTGAAATGGCAAGTGATGAGAGGCAATCAGAGAATAAAAGCTCGAAGAAAAGGCATTGTTTGAGTGTGAGCGTGGAGGTGCACCAAAAGCCACGACTGATCAATTCAAATGTGGTCGATGTGGGAAACGCAAGACCACCTACTACCAGATGCAGACACGGAGTGCCGATGAACCTATGA

Protein Analysis

361

Amino Acids

40.33

Weight (kDa)

9.35

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 33 - 83 4.3e-11 TFIIS helical bundle-like domain
TFIIS_M PF07500 205 - 320 2.4e-32 Transcription factor S-II (TFIIS), central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011422)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 894
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 44, 54, 527
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 845
AcyI GRCGYC 2 cut(s) 51, 75
AdeI CACNNNGTG 1 cut(s) 1069
AfaI GTAC 1 cut(s) 803
AfiI CCNNNNNNNGG 2 cut(s) 159, 578
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 897
AgsI TTSAA 3 cut(s) 488, 545, 1014
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 2 cut(s) 335, 672
AjuI GAANNNNNNNTTGG 3 cut(s) 31, 506, 538
AluBI AGCT 5 cut(s) 13, 139, 518, 908, 948
AluI AGCT 5 cut(s) 13, 139, 518, 908, 948
Alw21I GWGCWC 1 cut(s) 990
Alw26I GTCTC 3 cut(s) 92, 133, 151
Alw44I GTGCAC 1 cut(s) 986
AlwI GGATC 1 cut(s) 114
AoxI GGCC 4 cut(s) 45, 99, 338, 381
ApaLI GTGCAC 1 cut(s) 986
ApeKI GCWGC 2 cut(s) 362, 646
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 2 cut(s) 77, 217
AspS9I GGNCC 4 cut(s) 382, 581, 786, 829
AsuHPI GGTGA 1 cut(s) 413
AvaII GGWCC 3 cut(s) 581, 786, 829
BaeGI GKGCMC 1 cut(s) 990
BanI GGYRCC 1 cut(s) 74
BarI GAAGNNNNNNTAC 2 cut(s) 785, 817
Bbv12I GWGCWC 1 cut(s) 990
BbvI GCAGC 2 cut(s) 349, 633
BccI CCATC 1 cut(s) 220
BciT130I CCWGG 2 cut(s) 337, 674
BclI TGATCA 2 cut(s) 616, 1005
BcoDI GTCTC 3 cut(s) 92, 133, 151
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 276
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 4 cut(s) 45, 54, 363, 647
BlpI GCTNAGC 1 cut(s) 218
BlsI GCNGC 4 cut(s) 46, 55, 364, 648
Bme1390I CCNGG 2 cut(s) 337, 674
Bme18I GGWCC 3 cut(s) 581, 786, 829
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 4 cut(s) 382, 581, 786, 829
BmiI GGNNCC 6 cut(s) 76, 384, 583, 778, 787, 788
BmrFI CCNGG 2 cut(s) 337, 674
BmrI ACTGGG 1 cut(s) 778
BmsI GCATC 1 cut(s) 1046
BmuI ACTGGG 1 cut(s) 778
Bpu1102I GCTNAGC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 51, 75
BsaJI CCNNGG 7 cut(s) 78, 102, 335, 387, 522, 663, 672
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 578
Bse1I ACTGG 1 cut(s) 773
BseBI CCWGG 2 cut(s) 337, 674
BseDI CCNNGG 7 cut(s) 78, 102, 335, 387, 522, 663, 672
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 159, 578
BseMII CTCAG 2 cut(s) 501, 672
BseNI ACTGG 1 cut(s) 773
BseSI GKGCMC 1 cut(s) 990
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 349, 633
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 47, 101, 340, 383
BshNI GGYRCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 990
BslFI GGGAC 5 cut(s) 318, 481, 567, 641, 772
BslI CCNNNNNNNGG 2 cut(s) 159, 578
BsmAI GTCTC 3 cut(s) 92, 133, 151
BsmBI CGTCTC 2 cut(s) 133, 151
BsmFI GGGAC 5 cut(s) 318, 481, 567, 641, 772
BsmI GAATGC 2 cut(s) 648, 718
BsnI GGCC 4 cut(s) 47, 101, 340, 383
Bsp1286I GDGCHC 1 cut(s) 990
Bsp143I GATC 5 cut(s) 106, 418, 616, 806, 1005
Bsp1720I GCTNAGC 1 cut(s) 218
BspACI CCGC 3 cut(s) 44, 54, 527
BspANI GGCC 4 cut(s) 47, 101, 340, 383
BspCNI CTCAG 2 cut(s) 502, 673
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 6 cut(s) 76, 384, 583, 778, 787, 788
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 170
BsrI ACTGG 1 cut(s) 773
BssECI CCNNGG 7 cut(s) 78, 102, 335, 387, 522, 663, 672
BssMI GATC 5 cut(s) 106, 418, 616, 806, 1005
BssNI GRCGYC 2 cut(s) 51, 75
BssT1I CCWWGG 4 cut(s) 102, 387, 522, 663
Bst2UI CCWGG 2 cut(s) 337, 674
Bst4CI ACNGT 2 cut(s) 71, 745
BstACI GRCGYC 2 cut(s) 51, 75
BstAFI CTTAAG 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 718
BstDEI CTNAG 4 cut(s) 218, 510, 681, 798
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 217
BstKTI GATC 5 cut(s) 109, 421, 619, 809, 1008
BstMAI GTCTC 3 cut(s) 92, 133, 151
BstMBI GATC 5 cut(s) 106, 418, 616, 806, 1005
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 7 cut(s) 50, 53, 72, 389, 524, 914, 994
BstNI CCWGG 2 cut(s) 337, 674
BstNSI RCATGY 2 cut(s) 720, 901
BstSCI CCNGG 2 cut(s) 335, 672
BstSLI GKGCMC 1 cut(s) 990
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 349, 633
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 4 cut(s) 47, 101, 340, 383
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 714, 750
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 718
CfoI GCGC 2 cut(s) 77, 217
Cfr13I GGNCC 4 cut(s) 382, 581, 786, 829
CseI GACGC 2 cut(s) 59, 155
Csp6I GTAC 1 cut(s) 802
CviAII CATG 4 cut(s) 234, 650, 717, 898
CviQI GTAC 1 cut(s) 802
DdeI CTNAG 4 cut(s) 218, 510, 681, 798
DinI GGCGCC 1 cut(s) 76
DpnI GATC 5 cut(s) 108, 420, 618, 808, 1007
DpnII GATC 5 cut(s) 106, 418, 616, 806, 1005
DraIII CACNNNGTG 1 cut(s) 1069
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
EciI GGCGGA 1 cut(s) 542
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 4 cut(s) 102, 387, 522, 663
Eco147I AGGCCT 2 cut(s) 101, 340
Eco32I GATATC 1 cut(s) 874
Eco47I GGWCC 3 cut(s) 581, 786, 829
Eco52I CGGCCG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 845
EcoO109I RGGNCCY 2 cut(s) 382, 786
EcoRII CCWGG 2 cut(s) 335, 672
EcoRV GATATC 1 cut(s) 874
EcoT14I CCWWGG 4 cut(s) 102, 387, 522, 663
EcoT22I ATGCAT 1 cut(s) 718
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
ErhI CCWWGG 4 cut(s) 102, 387, 522, 663
Esp3I CGTCTC 2 cut(s) 133, 151
FaeI CATG 4 cut(s) 237, 653, 720, 901
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 5 cut(s) 318, 481, 567, 641, 772
FatI CATG 4 cut(s) 233, 649, 716, 897
FbaI TGATCA 2 cut(s) 616, 1005
FblI GTMKAC 1 cut(s) 894
Fnu4HI GCNGC 4 cut(s) 45, 54, 363, 647
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 45, 54, 363, 647
FspBI CTAG 1 cut(s) 192
GlaI GCGC 2 cut(s) 76, 216
GluI GCNGC 4 cut(s) 45, 54, 363, 647
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 4 cut(s) 47, 101, 340, 383
HgaI GACGC 2 cut(s) 59, 155
HhaI GCGC 2 cut(s) 77, 217
Hin1I GRCGYC 2 cut(s) 51, 75
Hin1II CATG 4 cut(s) 237, 653, 720, 901
Hin6I GCGC 2 cut(s) 75, 215
HinP1I GCGC 2 cut(s) 75, 215
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HinfI GANTC 8 cut(s) 175, 230, 302, 317, 349, 677, 704, 749
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 4 cut(s) 594, 895, 903, 988
Hpy188I TCNGA 5 cut(s) 354, 442, 460, 682, 937
Hpy188III TCNNGA 4 cut(s) 95, 205, 422, 505
Hpy8I GTNNAC 4 cut(s) 594, 895, 903, 988
Hpy99I CGWCG 3 cut(s) 35, 53, 71
HpyAV CCTTC 5 cut(s) 34, 373, 406, 787, 820
HpyCH4III ACNGT 2 cut(s) 71, 745
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 649, 716, 988, 1059
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 53, 72, 389, 524, 914, 994
HpyF3I CTNAG 4 cut(s) 218, 510, 681, 798
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 2 cut(s) 51, 75
Hsp92II CATG 4 cut(s) 237, 653, 720, 901
HspAI GCGC 2 cut(s) 75, 215
KasI GGCGCC 1 cut(s) 74
KflI GGGWCCC 1 cut(s) 786
Ksp22I TGATCA 2 cut(s) 616, 1005
Kzo9I GATC 5 cut(s) 106, 418, 616, 806, 1005
LmnI GCTCC 2 cut(s) 10, 523
Lsp1109I GCAGC 2 cut(s) 349, 633
LweI GCATC 1 cut(s) 1046
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 3 cut(s) 34, 401, 739
MalI GATC 5 cut(s) 108, 420, 618, 808, 1007
MboI GATC 5 cut(s) 106, 418, 616, 806, 1005
MboII GAAGA 5 cut(s) 289, 358, 577, 854, 964
MhlI GDGCHC 1 cut(s) 990
MluCI AATT 4 cut(s) 118, 243, 813, 1009
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 3 cut(s) 326, 686, 758
MnlI CCTC 9 cut(s) 13, 73, 91, 247, 646, 676, 879, 921, 976
Mph1103I ATGCAT 1 cut(s) 718
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 5 cut(s) 114, 171, 408, 429, 819
MspA1I CMGCKG 1 cut(s) 908
MspCI CTTAAG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 337, 674
Mva1269I GAATGC 2 cut(s) 648, 718
MvaI CCWGG 2 cut(s) 337, 674
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 7 cut(s) 50, 53, 72, 389, 524, 914, 994
NarI GGCGCC 1 cut(s) 75
NdeII GATC 5 cut(s) 106, 418, 616, 806, 1005
NlaIII CATG 4 cut(s) 237, 653, 720, 901
NlaIV GGNNCC 6 cut(s) 76, 384, 583, 778, 787, 788
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 34, 401
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 2 cut(s) 720, 901
PaeI GCATGC 1 cut(s) 720
PceI AGGCCT 2 cut(s) 101, 340
PciI ACATGT 1 cut(s) 897
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 2 cut(s) 648, 718
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 5 cut(s) 175, 230, 302, 349, 704
PkrI GCNGC 4 cut(s) 46, 55, 364, 648
PleI GAGTC 3 cut(s) 325, 685, 757
PluTI GGCGCC 1 cut(s) 78
PpsI GAGTC 3 cut(s) 325, 685, 757
PpuMI RGGWCCY 1 cut(s) 786
PscI ACATGT 1 cut(s) 897
Psp5II RGGWCCY 1 cut(s) 786
Psp6I CCWGG 2 cut(s) 335, 672
PspGI CCWGG 2 cut(s) 335, 672
PspN4I GGNNCC 6 cut(s) 76, 384, 583, 778, 787, 788
PspPI GGNCC 4 cut(s) 382, 581, 786, 829
PspPPI RGGWCCY 1 cut(s) 786
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
SaqAI TTAA 5 cut(s) 114, 171, 408, 429, 819
SatI GCNGC 4 cut(s) 45, 54, 363, 647
Sau3AI GATC 5 cut(s) 106, 418, 616, 806, 1005
Sau96I GGNCC 4 cut(s) 382, 581, 786, 829
SchI GAGTC 3 cut(s) 326, 686, 758
ScrFI CCNGG 2 cut(s) 337, 674
SduI GDGCHC 1 cut(s) 990
SfaNI GCATC 1 cut(s) 1046
SfoI GGCGCC 1 cut(s) 76
SinI GGWCC 3 cut(s) 581, 786, 829
SmlI CTYRAG 2 cut(s) 95, 170
SmoI CTYRAG 2 cut(s) 95, 170
SphI GCATGC 1 cut(s) 720
Sse9I AATT 4 cut(s) 118, 243, 813, 1009
SseBI AGGCCT 2 cut(s) 101, 340
SsiI CCGC 3 cut(s) 44, 54, 527
SspDI GGCGCC 1 cut(s) 74
SspMI CTAG 1 cut(s) 192
StuI AGGCCT 2 cut(s) 101, 340
StyD4I CCNGG 2 cut(s) 335, 672
StyI CCWWGG 4 cut(s) 102, 387, 522, 663
TaaI ACNGT 2 cut(s) 71, 745
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 950, 1023
TasI AATT 4 cut(s) 118, 243, 813, 1009
TauI GCSGC 2 cut(s) 47, 56
TfiI GAWTC 5 cut(s) 175, 230, 302, 349, 704
Tru1I TTAA 5 cut(s) 114, 171, 408, 429, 819
Tru9I TTAA 5 cut(s) 114, 171, 408, 429, 819
TscAI CASTG 2 cut(s) 714, 750
TseFI GTSAC 2 cut(s) 34, 401
TseI GCWGC 2 cut(s) 362, 646
Tsp45I GTSAC 2 cut(s) 34, 401
TspDTI ATGAA 2 cut(s) 306, 705
TspGWI ACGGA 2 cut(s) 488, 1080
TspRI CASTG 2 cut(s) 714, 750
Vha464I CTTAAG 1 cut(s) 170
VneI GTGCAC 1 cut(s) 986
VpaK11BI GGWCC 3 cut(s) 581, 786, 829
XceI RCATGY 2 cut(s) 720, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 894
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.