pycom07g21250

Transcription elongation factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
23050539 .. 23052200
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21250.1

Sequence Viewer

Length: 1140 bp
ATGGAGAAGGAGCTTCTGGAGTTGTTCGACGCCGTGAAGAAAATGGCGGACGCCGCCACATCTTGCGACGGAGGAGCCGAGGAAAGCCAATGCCTTGAGGCCTTCGAGCAGCTCAGGAATTTTCCCGTCACTCATCAAATCCTCGTCTCAACCCAAGTTGGGAAGCGTCTTCGGCATCTCACAAAACATCCTAGAAAGAAAATCCAGTCTGTTGCTTCTGGCCTGTTGGAGAAATGGAAAGAGATTGTTATGACTGAGGTAGAAAAAACTGTGAAAAATGTGAACTTGGAGAGAATAGACTCTCTAAAACGTGATTCTCCACGTGCCGACAGCCCCAGGCCTGAGAAGGTTCAGAAGACATCTGCTGTGAAGGTTGAGAAGGTTTCCAAGGCTGAACCTGTTGAGGTTAAGAAGGTCGATCGTGATGTCAAGCCAAGATCCGAGAATGCTTATGGTTCCGGAACTGTCAAAACAGAAGGGAAGGTTCCAAATCTTAATCCTGTCAAGACTGAGAAATCTGCTTCAGCGGAGACTGTTAAGGTTGAAAAGGTAGCCAAAGAAGTGAAGAAACCAGCACTCAACTCCTCTGGTCCCCCAAAGTTAACCTCTATGATTAAGTGTAATGATACAGCTCGGGACAAAGTAAGGGTACTGCTGCATGAGGCTTTGTCAAAGGTTGCTGCGGAGGGTGATGAAAGGTTTGCCGATGAGGTGAATGCAGCTGATCCTATTCGAGTAGCTGTCACTGTGGAATCTTTGCTCTTTGAGAATTGGGGTGGTTCCACCGGCTCTCAGAAGGCTAAATATCGATCTTTGATTTTCAACTTGAAGGACCAAAAGAACCTAGATTTCCGGAGAAAAGTTCTGCTTGGACATATCAAGGCAGAGAGGCTCGTGAACCTGTCAACAGCGGAAATGGCAAGTGATCAGAGGCAAGAGGAGACCAAGAAGCTTGAAGAAAAAGCATTGTTTGAGTGCGAGCGTGGAGGTGCACCAAAAGCCACAACCGATCAATTCAGATGTGGTCGGTGTGGGCAGCGCAAGACCACCTACTACCAAATGCAGACCCGGAGTGCGGATGAACCTATGACAACATATGTAACATGTGTAAACTGCAATAACCGTTGGAAGTTCTGTTAG

Protein Analysis

380

Amino Acids

42.53

Weight (kDa)

9.28

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 34 - 83 1.2e-10 TFIIS helical bundle-like domain
TFIIS_M PF07500 208 - 326 4.5e-31 Transcription factor S-II (TFIIS), central domain
Zn_ribbon_TFIIS PF01096 339 - 377 2.1e-18 Transcription factor S-II (TFIIS)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011422)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 458, 852
AciI CCGC 6 cut(s) 47, 54, 527, 683, 911, 1076
AclWI GGATC 2 cut(s) 432, 719
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 507
AcvI CACGTG 1 cut(s) 323
AcyI GRCGYC 2 cut(s) 30, 51
AfaI GTAC 1 cut(s) 651
AfiI CCNNNNNNNGG 2 cut(s) 159, 1075
AflIII ACRYGT 1 cut(s) 1103
AgsI TTSAA 4 cut(s) 545, 823, 829, 956
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 6 cut(s) 13, 112, 632, 722, 740, 952
AluI AGCT 6 cut(s) 13, 112, 632, 722, 740, 952
Alw21I GWGCWC 1 cut(s) 994
Alw26I GTCTC 3 cut(s) 151, 524, 935
Alw44I GTGCAC 1 cut(s) 990
AlwI GGATC 2 cut(s) 432, 719
Ama87I CYCGRG 1 cut(s) 633
Aor13HI TCCGGA 2 cut(s) 458, 852
AoxI GGCC 3 cut(s) 99, 220, 338
ApaLI GTGCAC 1 cut(s) 990
ApeKI GCWGC 5 cut(s) 109, 655, 680, 719, 1036
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 1041
AspS9I GGNCC 2 cut(s) 590, 832
AsuC2I CCSGG 1 cut(s) 1069
AsuHPI GGTGA 2 cut(s) 701, 724
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 2 cut(s) 590, 832
BaeGI GKGCMC 1 cut(s) 994
BauI CACGAG 1 cut(s) 893
BbrPI CACGTG 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 161, 362
Bbv12I GWGCWC 1 cut(s) 994
BbvI GCAGC 5 cut(s) 121, 642, 667, 731, 1048
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 337
BclI TGATCA 1 cut(s) 925
BcnI CCSGG 1 cut(s) 1069
BcoDI GTCTC 3 cut(s) 151, 524, 935
BfaI CTAG 2 cut(s) 192, 845
BisI GCNGC 6 cut(s) 54, 110, 656, 681, 720, 1037
BlsI GCNGC 6 cut(s) 55, 111, 657, 682, 721, 1038
Bme1390I CCNGG 2 cut(s) 337, 1069
Bme18I GGWCC 2 cut(s) 590, 832
BmeT110I CYCGRG 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 590, 832
BmiI GGNNCC 5 cut(s) 76, 457, 486, 592, 781
BmrFI CCNGG 2 cut(s) 337, 1069
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 2 cut(s) 161, 362
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 1069
Bsa29I ATCGAT 1 cut(s) 808
BsaAI YACGTR 1 cut(s) 323
BsaHI GRCGYC 2 cut(s) 30, 51
BsaI GGTCTC 1 cut(s) 935
BsaJI CCNNGG 3 cut(s) 78, 335, 387
BsaWI WCCGGW 2 cut(s) 458, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 1075
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 1 cut(s) 205
BseAI TCCGGA 2 cut(s) 458, 852
BseBI CCWGG 1 cut(s) 337
BseCI ATCGAT 1 cut(s) 808
BseDI CCNNGG 3 cut(s) 78, 335, 387
BseGI GGATG 2 cut(s) 187, 1084
BseLI CCNNNNNNNGG 2 cut(s) 159, 1075
BseMII CTCAG 5 cut(s) 127, 246, 333, 501, 806
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 3 cut(s) 87, 574, 953
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 5 cut(s) 121, 642, 667, 731, 1048
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 3 cut(s) 101, 222, 340
BshVI ATCGAT 1 cut(s) 808
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 994
BsiHKCI CYCGRG 1 cut(s) 633
BsiSI CCGG 4 cut(s) 459, 786, 853, 1069
BslFI GGGAC 2 cut(s) 576, 650
BslI CCNNNNNNNGG 2 cut(s) 159, 1075
BsmAI GTCTC 3 cut(s) 151, 524, 935
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 576, 650
BsmI GAATGC 2 cut(s) 451, 721
BsnI GGCC 3 cut(s) 101, 222, 340
Bso31I GGTCTC 1 cut(s) 935
BsoBI CYCGRG 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 994
Bsp13I TCCGGA 2 cut(s) 458, 852
Bsp143I GATC 6 cut(s) 418, 437, 724, 809, 925, 1009
BspACI CCGC 6 cut(s) 47, 54, 527, 683, 911, 1076
BspANI GGCC 3 cut(s) 101, 222, 340
BspCNI CTCAG 5 cut(s) 126, 247, 334, 502, 805
BspDI ATCGAT 1 cut(s) 808
BspEI TCCGGA 2 cut(s) 458, 852
BspLI GGNNCC 5 cut(s) 76, 457, 486, 592, 781
BspPI GGATC 2 cut(s) 432, 719
BspTNI GGTCTC 1 cut(s) 935
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 3 cut(s) 78, 335, 387
BssMI GATC 6 cut(s) 418, 437, 724, 809, 925, 1009
BssNI GRCGYC 2 cut(s) 30, 51
BssSI CACGAG 1 cut(s) 893
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 893
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 5 cut(s) 271, 466, 535, 748, 1124
BstACI GRCGYC 2 cut(s) 30, 51
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 980
BstDEI CTNAG 5 cut(s) 113, 255, 342, 510, 792
BstF5I GGATG 2 cut(s) 187, 1084
BstHHI GCGC 1 cut(s) 1041
BstKTI GATC 6 cut(s) 421, 440, 727, 812, 928, 1012
BstMAI GTCTC 3 cut(s) 151, 524, 935
BstMBI GATC 6 cut(s) 418, 437, 724, 809, 925, 1009
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 4 cut(s) 53, 172, 917, 998
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 1107
BstSCI CCNGG 2 cut(s) 335, 1067
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 5 cut(s) 121, 642, 667, 731, 1048
BstV2I GAAGAC 2 cut(s) 161, 362
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
Bsu15I ATCGAT 1 cut(s) 808
BsuRI GGCC 3 cut(s) 101, 222, 340
BsuTUI ATCGAT 1 cut(s) 808
BtsCI GGATG 2 cut(s) 187, 1084
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 1 cut(s) 980
CfoI GCGC 1 cut(s) 1041
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 2 cut(s) 590, 832
ClaI ATCGAT 1 cut(s) 808
CseI GACGC 3 cut(s) 38, 59, 155
Csp6I GTAC 1 cut(s) 650
CviAII CATG 2 cut(s) 659, 1104
CviQI GTAC 1 cut(s) 650
DdeI CTNAG 5 cut(s) 113, 255, 342, 510, 792
DpnI GATC 6 cut(s) 420, 439, 726, 811, 927, 1011
DpnII GATC 6 cut(s) 418, 437, 724, 809, 925, 1009
EciI GGCGGA 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 387
Eco147I AGGCCT 2 cut(s) 101, 340
Eco31I GGTCTC 1 cut(s) 935
Eco47I GGWCC 2 cut(s) 590, 832
Eco57I CTGAAG 1 cut(s) 507
Eco72I CACGTG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 2 cut(s) 662, 1107
FaiI YATR 9 cut(s) 251, 453, 611, 660, 876, 1088, 1096, 1098, 1105
FalI AAGNNNNNCTT 2 cut(s) 852, 884
FaqI GGGAC 2 cut(s) 576, 650
FatI CATG 2 cut(s) 658, 1103
FauNDI CATATG 1 cut(s) 1096
FbaI TGATCA 1 cut(s) 925
Fnu4HI GCNGC 6 cut(s) 54, 110, 656, 681, 720, 1037
FokI GGATG 2 cut(s) 174, 1091
Fsp4HI GCNGC 6 cut(s) 54, 110, 656, 681, 720, 1037
FspBI CTAG 2 cut(s) 192, 845
GlaI GCGC 1 cut(s) 1040
GluI GCNGC 6 cut(s) 54, 110, 656, 681, 720, 1037
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 3 cut(s) 101, 222, 340
HapII CCGG 4 cut(s) 459, 786, 853, 1069
HgaI GACGC 3 cut(s) 38, 59, 155
HhaI GCGC 1 cut(s) 1041
Hin1I GRCGYC 2 cut(s) 30, 51
Hin1II CATG 2 cut(s) 662, 1107
Hin6I GCGC 1 cut(s) 1039
HinP1I GCGC 1 cut(s) 1039
HincII GTYRAC 2 cut(s) 603, 906
HindII GTYRAC 2 cut(s) 603, 906
HindIII AAGCTT 1 cut(s) 950
HinfI GANTC 3 cut(s) 299, 314, 752
HpaI GTTAAC 1 cut(s) 603
HpaII CCGG 4 cut(s) 459, 786, 853, 1069
HphI GGTGA 2 cut(s) 701, 724
Hpy166II GTNNAC 6 cut(s) 283, 603, 898, 906, 992, 1111
Hpy188I TCNGA 5 cut(s) 354, 442, 795, 930, 1019
Hpy188III TCNNGA 8 cut(s) 17, 115, 422, 459, 505, 635, 853, 895
Hpy8I GTNNAC 6 cut(s) 283, 603, 898, 906, 992, 1111
Hpy99I CGWCG 2 cut(s) 32, 71
HpyAV CCTTC 9 cut(s) 112, 340, 364, 373, 406, 470, 475, 790, 823
HpyCH4III ACNGT 5 cut(s) 271, 466, 535, 748, 1124
HpyCH4IV ACGT 2 cut(s) 310, 322
HpyCH4V TGCA 5 cut(s) 658, 719, 992, 1063, 1116
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 172, 917, 998
HpyF3I CTNAG 5 cut(s) 113, 255, 342, 510, 792
HpySE526I ACGT 2 cut(s) 310, 322
Hsp92I GRCGYC 2 cut(s) 30, 51
Hsp92II CATG 2 cut(s) 662, 1107
HspAI GCGC 1 cut(s) 1039
Kpn2I TCCGGA 2 cut(s) 458, 852
Ksp22I TGATCA 1 cut(s) 925
KspAI GTTAAC 1 cut(s) 603
Kzo9I GATC 6 cut(s) 418, 437, 724, 809, 925, 1009
LmnI GCTCC 2 cut(s) 10, 74
Lsp1109I GCAGC 5 cut(s) 121, 642, 667, 731, 1048
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 192, 845
MaeII ACGT 2 cut(s) 310, 322
MaeIII GTNAC 3 cut(s) 127, 742, 1099
MalI GATC 6 cut(s) 420, 439, 726, 811, 927, 1011
MboI GATC 6 cut(s) 418, 437, 724, 809, 925, 1009
MboII GAAGA 5 cut(s) 49, 161, 367, 577, 968
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 994
MluCI AATT 3 cut(s) 118, 769, 1013
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 2 cut(s) 207, 1106
MroI TCCGGA 2 cut(s) 458, 852
MseI TTAA 5 cut(s) 408, 495, 537, 602, 615
MspA1I CMGCKG 3 cut(s) 527, 722, 911
MspI CCGG 4 cut(s) 459, 786, 853, 1069
MspR9I CCNGG 2 cut(s) 337, 1069
Mva1269I GAATGC 2 cut(s) 451, 721
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 4 cut(s) 53, 172, 917, 998
NciI CCSGG 1 cut(s) 1069
NdeI CATATG 1 cut(s) 1096
NdeII GATC 6 cut(s) 418, 437, 724, 809, 925, 1009
NlaIII CATG 2 cut(s) 662, 1107
NlaIV GGNNCC 5 cut(s) 76, 457, 486, 592, 781
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 127, 742
NspI RCATGY 1 cut(s) 1107
PceI AGGCCT 2 cut(s) 101, 340
PciI ACATGT 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 2 cut(s) 451, 721
PfeI GAWTC 2 cut(s) 314, 752
PkrI GCNGC 6 cut(s) 55, 111, 657, 682, 721, 1038
Ple19I CGATCG 1 cut(s) 421
PleI GAGTC 1 cut(s) 293
PmaCI CACGTG 1 cut(s) 323
PmlI CACGTG 1 cut(s) 323
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 1103
Psp6I CCWGG 1 cut(s) 335
PspCI CACGTG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 5 cut(s) 76, 457, 486, 592, 781
PspPI GGNCC 2 cut(s) 590, 832
PsuI RGATCY 1 cut(s) 437
PvuI CGATCG 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 1 cut(s) 651
RsaNI GTAC 1 cut(s) 650
SaqAI TTAA 5 cut(s) 408, 495, 537, 602, 615
SatI GCNGC 6 cut(s) 54, 110, 656, 681, 720, 1037
Sau3AI GATC 6 cut(s) 418, 437, 724, 809, 925, 1009
Sau96I GGNCC 2 cut(s) 590, 832
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 337, 1069
SduI GDGCHC 1 cut(s) 994
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 2 cut(s) 590, 832
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 3 cut(s) 118, 769, 1013
SseBI AGGCCT 2 cut(s) 101, 340
SsiI CCGC 6 cut(s) 47, 54, 527, 683, 911, 1076
SspMI CTAG 2 cut(s) 192, 845
StuI AGGCCT 2 cut(s) 101, 340
StyD4I CCNGG 2 cut(s) 335, 1067
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 5 cut(s) 271, 466, 535, 748, 1124
TaiI ACGT 2 cut(s) 313, 325
TaqI TCGA 5 cut(s) 27, 105, 417, 733, 808
TasI AATT 3 cut(s) 118, 769, 1013
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 314, 752
Tru1I TTAA 5 cut(s) 408, 495, 537, 602, 615
Tru9I TTAA 5 cut(s) 408, 495, 537, 602, 615
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 2 cut(s) 127, 742
TseI GCWGC 5 cut(s) 109, 655, 680, 719, 1036
Tsp45I GTSAC 2 cut(s) 127, 742
TspDTI ATGAA 2 cut(s) 708, 1095
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 751
VneI GTGCAC 1 cut(s) 990
VpaK11BI GGWCC 2 cut(s) 590, 832
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 1107
XspI CTAG 2 cut(s) 192, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.