AT2G39100

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010256
Physical Location & Seq
Forward (+)
16317356 .. 16319387
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39100.1

Sequence Viewer

Length: 891 bp
ATGCCTCCATTACCGTCCTCCACGGCGCCTTCGTCTTCGAGACATCTTCGATCGCCGGAAAGTATCGCGAAATTTGCAGGGAGAGCAATATTTCCTGCTTTACAGGGGAAATCGTGTCCGATATGCCTCGAAAATCTAACCGAGCGAAGATCCGCCGCCGTGATCACGGTGTGCAAGCACGGATACTGCCTTGCTTGTATTCGGAAGTGGAGCAGCTTCAAGAGGAATTGTCCTCTTTGTAACACTCGTTTTGATTCCTGGTTTATCGTTAGTGATTTTGCTTCTAGAAAATACCATAAGGAGCAATTACCAATTCTTCGTGATCGTGAGACTTTAACTTATCATCGGAATAATCCTTCCGATCGCCGGAGGATAATTCAAAGGTCGAGGGATGTTTTGGAAAACTCTAGCTCAAGATCAAGGCCATTGCCATGGCGGAGATCATTTGGACGACCAGGTTCAGTTCCTGATTCTGTTATCTTCCAGCGAAAGCTTCAGTGGCGAGCTAGCATATACACTAAGCAATTACGAGCTGTTCGATTACATTCAAGGCGCTTGGAACTAAGTTTGGCGGTGAATGATTACACCAAAGCAAAGATAACTGAAAGAATTGAGCCATGGATTAGAAGAGAGCTTCAGGCAGTCCTTGGAGATCCTGATCCCTCAGTTATTGTTCATTTTGCGTCAGCTCTTTTCATCAAAAGGCTTGAGAGAGAGAATAATCGACAAACCGGGCAGACCGGGATGTTGGTGGAAGATGAAGTCTCCTCTCTTCGAAAATTCTTGTCTGATAAGGTGGATATATTTTGGCATGAACTAAGATGTTTTGCGGAGAGTATACTCACGATGGAGACTTATGATGCAGTGGTTGAATACAATGAGGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000209 GO:0000922 GO:0000930 GO:0001654 GO:0001754 GO:0003407 GO:0003674 GO:0003676 GO:0003677 GO:0003823 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005819 GO:0005856 GO:0005929 GO:0006139 GO:0006351 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007423 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008630 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009653 GO:0009887 GO:0009893 GO:0009987 GO:0010467 GO:0010498 GO:0010604 GO:0010842 GO:0010941 GO:0012501 GO:0015630 GO:0016043 GO:0016070 GO:0016567 GO:0016604 GO:0016605 GO:0016607 GO:0016740 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022008 GO:0023052 GO:0030154 GO:0030163 GO:0030182 GO:0030496 GO:0031323 GO:0031325 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032391 GO:0032446 GO:0032501 GO:0032502 GO:0032507 GO:0032774 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0035845 GO:0035869 GO:0036064 GO:0036211 GO:0042461 GO:0042462 GO:0042670 GO:0042981 GO:0042995 GO:0043005 GO:0043010 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044451 GO:0044463 GO:0044464 GO:0044547 GO:0045185 GO:0046483 GO:0046530 GO:0046548 GO:0046549 GO:0048468 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048592 GO:0048593 GO:0048646 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051235 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051457 GO:0051603 GO:0051641 GO:0051651 GO:0051716 GO:0060041 GO:0060042 GO:0060219 GO:0060255 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0070936 GO:0071704 GO:0071840 GO:0072595 GO:0080090 GO:0090304 GO:0090596 GO:0097159 GO:0097190 GO:0097193 GO:0097458 GO:0097659 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1902494 GO:1903320 GO:1903322 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWI zf-C3HC4 zf-C3HC4_3 zf-RING_2

Protein Analysis

296

Amino Acids

34.42

Weight (kDa)

9.85

Isoelectric Point (pI)

71.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 37 - 81 2.1e-07 RING-H2 zinc finger domain
zf-C3HC4_3 PF13920 37 - 85 6.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 38 - 81 5.9e-10 Ring finger domain
zf-C3HC4 PF00097 39 - 80 9.7e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 39 - 80 8.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 39 - 82 7.4e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 838
AccII CGCG 1 cut(s) 68
AciI CCGC 5 cut(s) 153, 156, 436, 572, 830
AclWI GGATC 3 cut(s) 144, 647, 653
AcsI RAATTY 2 cut(s) 71, 779
AcuI CTGAAG 2 cut(s) 479, 620
AcyI GRCGYC 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 4 cut(s) 220, 380, 549, 872
AjnI CCWGG 2 cut(s) 257, 454
AluBI AGCT 7 cut(s) 216, 411, 493, 506, 533, 634, 689
AluI AGCT 7 cut(s) 216, 411, 493, 506, 533, 634, 689
Alw26I GTCTC 4 cut(s) 34, 323, 769, 845
AlwI GGATC 3 cut(s) 144, 647, 653
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 2 cut(s) 71, 779
AspLEI GCGC 2 cut(s) 28, 555
AsuC2I CCSGG 2 cut(s) 733, 742
AsuHPI GGTGA 1 cut(s) 586
AsuII TTCGAA 1 cut(s) 775
AsuNHI GCTAGC 1 cut(s) 506
BanI GGYRCC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 841
BceAI ACGGC 2 cut(s) 39, 143
BciT130I CCWGG 2 cut(s) 259, 456
BciVI GTATCC 1 cut(s) 176
BclI TGATCA 1 cut(s) 162
BcnI CCSGG 2 cut(s) 733, 742
BcoDI GTCTC 4 cut(s) 34, 323, 769, 845
BfaI CTAG 3 cut(s) 285, 408, 507
BfoI RGCGCY 2 cut(s) 29, 556
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 2 cut(s) 156, 214
BlsI GCNGC 2 cut(s) 157, 215
Bme1390I CCNGG 4 cut(s) 259, 456, 733, 742
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 4 cut(s) 259, 456, 733, 742
BmsI GCATC 1 cut(s) 850
BmtI GCTAGC 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 775
BpuEI CTTGAG 2 cut(s) 397, 728
BpuMI CCSGG 2 cut(s) 733, 742
BsaBI GATNNNNATC 1 cut(s) 657
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 4 cut(s) 21, 431, 617, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 2 cut(s) 259, 456
BseDI CCNNGG 4 cut(s) 21, 431, 617, 646
BseGI GGATG 2 cut(s) 397, 750
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 678
BseRI GAGGAG 1 cut(s) 757
BseXI GCAGC 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 2 cut(s) 53, 364
BshFI GGCC 1 cut(s) 424
BshNI GGYRCC 1 cut(s) 25
BsiEI CGRYCG 2 cut(s) 53, 364
BsiSI CCGG 4 cut(s) 56, 367, 732, 741
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 4 cut(s) 34, 323, 769, 845
BsnI GGCC 1 cut(s) 424
Bsp119I TTCGAA 1 cut(s) 775
Bsp143I GATC 9 cut(s) 50, 149, 162, 322, 361, 416, 440, 652, 658
Bsp19I CCATGG 2 cut(s) 431, 617
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 5 cut(s) 153, 156, 436, 572, 830
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 1 cut(s) 677
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 27
BspOI GCTAGC 1 cut(s) 510
BspPI GGATC 3 cut(s) 144, 647, 653
BspT104I TTCGAA 1 cut(s) 775
BspT107I GGYRCC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 425
BssECI CCNNGG 4 cut(s) 21, 431, 617, 646
BssMI GATC 9 cut(s) 50, 149, 162, 322, 361, 416, 440, 652, 658
BssNAI GTATAC 1 cut(s) 839
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 3 cut(s) 431, 617, 646
Bst1107I GTATAC 1 cut(s) 839
Bst2UI CCWGG 2 cut(s) 259, 456
Bst4CI ACNGT 2 cut(s) 15, 169
Bst6I CTCTTC 2 cut(s) 622, 777
BstACI GRCGYC 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 775
BstC8I GCNNGC 3 cut(s) 176, 504, 508
BstDEI CTNAG 4 cut(s) 519, 563, 664, 818
BstDSI CCRYGG 3 cut(s) 21, 431, 617
BstF5I GGATG 2 cut(s) 397, 750
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 2 cut(s) 29, 556
BstHHI GCGC 2 cut(s) 28, 555
BstKTI GATC 9 cut(s) 53, 152, 165, 325, 364, 419, 443, 655, 661
BstMAI GTCTC 4 cut(s) 34, 323, 769, 845
BstMBI GATC 9 cut(s) 50, 149, 162, 322, 361, 416, 440, 652, 658
BstMCI CGRYCG 2 cut(s) 53, 364
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 499
BstNI CCWGG 2 cut(s) 259, 456
BstSCI CCNGG 4 cut(s) 257, 454, 731, 740
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 2 cut(s) 149, 652
BstXI CCANNNNNNTGG 1 cut(s) 432
BstYI RGATCY 2 cut(s) 149, 652
BstZ17I GTATAC 1 cut(s) 839
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 424
BtgI CCRYGG 3 cut(s) 21, 431, 617
BtsCI GGATG 2 cut(s) 397, 750
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 2 cut(s) 503, 870
BtuMI TCGCGA 1 cut(s) 68
Cac8I GCNNGC 3 cut(s) 176, 504, 508
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 2 cut(s) 28, 555
CseI GACGC 1 cut(s) 672
CsiI ACCWGGT 1 cut(s) 454
CviAII CATG 3 cut(s) 432, 618, 812
DdeI CTNAG 4 cut(s) 519, 563, 664, 818
DinI GGCGCC 1 cut(s) 27
DpnI GATC 9 cut(s) 52, 151, 164, 324, 363, 418, 442, 654, 660
DpnII GATC 9 cut(s) 50, 149, 162, 322, 361, 416, 440, 652, 658
DraIII CACNNNGTG 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 622, 777
EarI CTCTTC 2 cut(s) 622, 777
EciI GGCGGA 2 cut(s) 142, 451
Eco130I CCWWGG 3 cut(s) 431, 617, 646
Eco57I CTGAAG 2 cut(s) 479, 620
EcoRII CCWGG 2 cut(s) 257, 454
EcoT14I CCWWGG 3 cut(s) 431, 617, 646
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
ErhI CCWWGG 3 cut(s) 431, 617, 646
FaeI CATG 3 cut(s) 435, 621, 815
FatI CATG 3 cut(s) 431, 617, 811
FbaI TGATCA 1 cut(s) 162
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 2 cut(s) 156, 214
FokI GGATG 2 cut(s) 404, 757
Fsp4HI GCNGC 2 cut(s) 156, 214
FspBI CTAG 3 cut(s) 285, 408, 507
GlaI GCGC 2 cut(s) 27, 554
GluI GCNGC 2 cut(s) 156, 214
HaeII RGCGCY 2 cut(s) 29, 556
HaeIII GGCC 1 cut(s) 424
HapII CCGG 4 cut(s) 56, 367, 732, 741
HgaI GACGC 1 cut(s) 672
HhaI GCGC 2 cut(s) 28, 555
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 3 cut(s) 435, 621, 815
Hin6I GCGC 2 cut(s) 26, 553
HinP1I GCGC 2 cut(s) 26, 553
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 2 cut(s) 254, 470
HpaII CCGG 4 cut(s) 56, 367, 732, 741
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 1 cut(s) 839
Hpy188I TCNGA 5 cut(s) 120, 204, 348, 361, 790
Hpy8I GTNNAC 1 cut(s) 839
HpyAV CCTTC 2 cut(s) 39, 366
HpyCH4III ACNGT 2 cut(s) 15, 169
HpyCH4V TGCA 3 cut(s) 77, 174, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 499
HpyF3I CTNAG 4 cut(s) 519, 563, 664, 818
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 3 cut(s) 435, 621, 815
HspAI GCGC 2 cut(s) 26, 553
KasI GGCGCC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 9 cut(s) 50, 149, 162, 322, 361, 416, 440, 652, 658
LmnI GCTCC 2 cut(s) 210, 301
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 850
MabI ACCWGGT 1 cut(s) 454
MaeI CTAG 3 cut(s) 285, 408, 507
MaeIII GTNAC 1 cut(s) 239
MalI GATC 9 cut(s) 52, 151, 164, 324, 363, 418, 442, 654, 660
MboI GATC 9 cut(s) 50, 149, 162, 322, 361, 416, 440, 652, 658
MboII GAAGA 8 cut(s) 27, 38, 159, 308, 472, 639, 764, 767
MflI RGATCY 2 cut(s) 149, 652
MluCI AATT 8 cut(s) 71, 226, 305, 312, 375, 524, 609, 779
Mly113I GGCGCC 1 cut(s) 26
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 430
MspI CCGG 4 cut(s) 56, 367, 732, 741
MspR9I CCNGG 4 cut(s) 259, 456, 733, 742
MvaI CCWGG 2 cut(s) 259, 456
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 499
NarI GGCGCC 1 cut(s) 26
NciI CCSGG 2 cut(s) 733, 742
NcoI CCATGG 2 cut(s) 431, 617
NdeII GATC 9 cut(s) 50, 149, 162, 322, 361, 416, 440, 652, 658
NheI GCTAGC 1 cut(s) 506
NlaIII CATG 3 cut(s) 435, 621, 815
NlaIV GGNNCC 1 cut(s) 27
NruI TCGCGA 1 cut(s) 68
NspV TTCGAA 1 cut(s) 775
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 535
PfeI GAWTC 2 cut(s) 254, 470
PkrI GCNGC 2 cut(s) 157, 215
Ple19I CGATCG 2 cut(s) 53, 364
PluTI GGCGCC 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 257, 454
PspGI CCWGG 2 cut(s) 257, 454
PspN4I GGNNCC 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 2 cut(s) 149, 652
PvuI CGATCG 2 cut(s) 53, 364
RruI TCGCGA 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 430
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 2 cut(s) 156, 214
Sau3AI GATC 9 cut(s) 50, 149, 162, 322, 361, 416, 440, 652, 658
ScrFI CCNGG 4 cut(s) 259, 456, 733, 742
SexAI ACCWGGT 1 cut(s) 454
SfaNI GCATC 1 cut(s) 850
SfoI GGCGCC 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 430
SmlI CTYRAG 2 cut(s) 412, 707
SmoI CTYRAG 2 cut(s) 412, 707
Sse9I AATT 8 cut(s) 71, 226, 305, 312, 375, 524, 609, 779
SsiI CCGC 5 cut(s) 153, 156, 436, 572, 830
SspDI GGCGCC 1 cut(s) 25
SspI AATATT 1 cut(s) 90
SspMI CTAG 3 cut(s) 285, 408, 507
StyD4I CCNGG 4 cut(s) 257, 454, 731, 740
StyI CCWWGG 3 cut(s) 431, 617, 646
TaaI ACNGT 2 cut(s) 15, 169
TaqI TCGA 7 cut(s) 38, 49, 129, 386, 538, 724, 775
TasI AATT 8 cut(s) 71, 226, 305, 312, 375, 524, 609, 779
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 2 cut(s) 254, 470
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 2 cut(s) 503, 870
TseI GCWGC 1 cut(s) 213
TspDTI ATGAA 4 cut(s) 665, 685, 774, 828
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 503, 870
XapI RAATTY 2 cut(s) 71, 779
XbaI TCTAGA 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 3 cut(s) 285, 408, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.