E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39100 AT2G39100 |
| fragaria_vesca | FvH4_4g17570 |
| malus_domestica | MD13G1171700.v1.1 |
| prunus_persica | Prupe.1G140100_v2.0.a1 Prupe.1G140100_v2.0.a1 Prupe.1G140100_v2.0.a1 Prupe.1G140100_v2.0.a1 Prupe.8G004900_v2.0.a1 |
| pyrus_communis | pycom13g14730 |
| rosa_chinensis | RchiOBHm_Chr4g0421471 |
| rosa_laevigata | RLG00000007677 |
| rosa_multiflora | Rmu_sc0001962.1_g000023 |
| rosa_roxburghii | Rroxscaffold_5G00363730 |
| rosa_rugosa | Rorug04G0171600 Rorug04G0171700 |
| rosa_samantha | Rh4AG232200 Rh4BG235100 Rh4CG246600 Rh4DG230800 |
| rosa_wichuraiana | Rw4G020180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 86 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 83 |
| AciI | CCGC | 1 cut(s) | 69 |
| AclWI | GGATC | 1 cut(s) | 492 |
| AcoI | YGGCCR | 1 cut(s) | 66 |
| AcsI | RAATTY | 2 cut(s) | 391, 598 |
| AfaI | GTAC | 1 cut(s) | 201 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 83, 529, 694 |
| AflIII | ACRYGT | 1 cut(s) | 217 |
| AgsI | TTSAA | 7 cut(s) | 11, 319, 396, 518, 544, 731, 778 |
| AjnI | CCWGG | 1 cut(s) | 687 |
| AluBI | AGCT | 1 cut(s) | 663 |
| AluI | AGCT | 1 cut(s) | 663 |
| Alw26I | GTCTC | 1 cut(s) | 42 |
| AlwI | GGATC | 1 cut(s) | 492 |
| AoxI | GGCC | 2 cut(s) | 66, 685 |
| ApoI | RAATTY | 2 cut(s) | 391, 598 |
| AspS9I | GGNCC | 1 cut(s) | 473 |
| AsuHPI | GGTGA | 2 cut(s) | 255, 628 |
| AsuII | TTCGAA | 1 cut(s) | 594 |
| AvaII | GGWCC | 1 cut(s) | 473 |
| BanI | GGYRCC | 1 cut(s) | 86 |
| BbsI | GAAGAC | 1 cut(s) | 664 |
| BciT130I | CCWGG | 1 cut(s) | 689 |
| BclI | TGATCA | 1 cut(s) | 739 |
| BcoDI | GTCTC | 1 cut(s) | 42 |
| BfaI | CTAG | 4 cut(s) | 45, 209, 248, 267 |
| BfmI | CTRYAG | 2 cut(s) | 426, 664 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 689 |
| Bme18I | GGWCC | 1 cut(s) | 473 |
| BmgT120I | GGNCC | 1 cut(s) | 473 |
| BmiI | GGNNCC | 1 cut(s) | 88 |
| BmrFI | CCNGG | 1 cut(s) | 689 |
| BmsI | GCATC | 1 cut(s) | 714 |
| BpiI | GAAGAC | 1 cut(s) | 664 |
| Bpu14I | TTCGAA | 1 cut(s) | 594 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 83, 529, 694 |
| Bse3DI | GCAATG | 1 cut(s) | 170 |
| BseBI | CCWGG | 1 cut(s) | 689 |
| BseGI | GGATG | 2 cut(s) | 152, 166 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 83, 529, 694 |
| BseMI | GCAATG | 1 cut(s) | 170 |
| BseMII | CTCAG | 1 cut(s) | 711 |
| BshFI | GGCC | 2 cut(s) | 68, 687 |
| BshNI | GGYRCC | 1 cut(s) | 86 |
| BslFI | GGGAC | 3 cut(s) | 578, 643, 710 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 83, 529, 694 |
| BsmAI | GTCTC | 1 cut(s) | 42 |
| BsmFI | GGGAC | 3 cut(s) | 578, 643, 710 |
| BsmI | GAATGC | 1 cut(s) | 345 |
| BsnI | GGCC | 2 cut(s) | 68, 687 |
| Bsp119I | TTCGAA | 1 cut(s) | 594 |
| Bsp143I | GATC | 3 cut(s) | 145, 484, 739 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspANI | GGCC | 2 cut(s) | 68, 687 |
| BspCNI | CTCAG | 1 cut(s) | 712 |
| BspLI | GGNNCC | 1 cut(s) | 88 |
| BspPI | GGATC | 1 cut(s) | 492 |
| BspT104I | TTCGAA | 1 cut(s) | 594 |
| BspT107I | GGYRCC | 1 cut(s) | 86 |
| BsrDI | GCAATG | 1 cut(s) | 170 |
| BssMI | GATC | 3 cut(s) | 145, 484, 739 |
| Bst2UI | CCWGG | 1 cut(s) | 689 |
| Bst4CI | ACNGT | 4 cut(s) | 134, 287, 477, 668 |
| Bst6I | CTCTTC | 2 cut(s) | 261, 426 |
| BstBI | TTCGAA | 1 cut(s) | 594 |
| BstC8I | GCNNGC | 1 cut(s) | 511 |
| BstDEI | CTNAG | 3 cut(s) | 99, 528, 720 |
| BstF5I | GGATG | 2 cut(s) | 152, 166 |
| BstKTI | GATC | 3 cut(s) | 148, 487, 742 |
| BstMAI | GTCTC | 1 cut(s) | 42 |
| BstMBI | GATC | 3 cut(s) | 145, 484, 739 |
| BstNI | CCWGG | 1 cut(s) | 689 |
| BstSCI | CCNGG | 1 cut(s) | 687 |
| BstSFI | CTRYAG | 2 cut(s) | 426, 664 |
| BstV2I | GAAGAC | 1 cut(s) | 664 |
| BsuRI | GGCC | 2 cut(s) | 68, 687 |
| BtsCI | GGATG | 2 cut(s) | 152, 166 |
| BtsIMutI | CAGTG | 1 cut(s) | 673 |
| Cac8I | GCNNGC | 1 cut(s) | 511 |
| Cfr13I | GGNCC | 1 cut(s) | 473 |
| Csp6I | GTAC | 1 cut(s) | 200 |
| CviAII | CATG | 3 cut(s) | 93, 109, 488 |
| CviJI | RGCY | 6 cut(s) | 44, 68, 104, 365, 663, 687 |
| CviKI_1 | RGCY | 6 cut(s) | 44, 68, 104, 365, 663, 687 |
| CviQI | GTAC | 1 cut(s) | 200 |
| DdeI | CTNAG | 3 cut(s) | 99, 528, 720 |
| DpnI | GATC | 3 cut(s) | 147, 486, 741 |
| DpnII | GATC | 3 cut(s) | 145, 484, 739 |
| EaeI | YGGCCR | 1 cut(s) | 66 |
| Eam1104I | CTCTTC | 2 cut(s) | 261, 426 |
| EarI | CTCTTC | 2 cut(s) | 261, 426 |
| Eco47I | GGWCC | 1 cut(s) | 473 |
| EcoRII | CCWGG | 1 cut(s) | 687 |
| FaeI | CATG | 3 cut(s) | 96, 112, 491 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 616, 648 |
| FaqI | GGGAC | 3 cut(s) | 578, 643, 710 |
| FatI | CATG | 3 cut(s) | 92, 108, 487 |
| FbaI | TGATCA | 1 cut(s) | 739 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 2 cut(s) | 139, 153 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 4 cut(s) | 45, 209, 248, 267 |
| GluI | GCNGC | 1 cut(s) | 69 |
| HaeIII | GGCC | 2 cut(s) | 68, 687 |
| Hin1II | CATG | 3 cut(s) | 96, 112, 491 |
| HinfI | GANTC | 3 cut(s) | 4, 251, 698 |
| HphI | GGTGA | 2 cut(s) | 255, 628 |
| Hpy166II | GTNNAC | 1 cut(s) | 619 |
| Hpy188I | TCNGA | 1 cut(s) | 680 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 143, 209, 248, 737 |
| Hpy8I | GTNNAC | 1 cut(s) | 619 |
| Hpy99I | CGWCG | 1 cut(s) | 684 |
| HpyAV | CCTTC | 1 cut(s) | 5 |
| HpyCH4III | ACNGT | 4 cut(s) | 134, 287, 477, 668 |
| HpyCH4IV | ACGT | 3 cut(s) | 219, 415, 733 |
| HpyCH4V | TGCA | 1 cut(s) | 345 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 528, 720 |
| HpySE526I | ACGT | 3 cut(s) | 219, 415, 733 |
| Hsp92II | CATG | 3 cut(s) | 96, 112, 491 |
| Ksp22I | TGATCA | 1 cut(s) | 739 |
| Kzo9I | GATC | 3 cut(s) | 145, 484, 739 |
| LpnPI | CCDG | 3 cut(s) | 674, 701, 732 |
| LweI | GCATC | 1 cut(s) | 714 |
| MaeI | CTAG | 4 cut(s) | 45, 209, 248, 267 |
| MaeII | ACGT | 3 cut(s) | 219, 415, 733 |
| MaeIII | GTNAC | 1 cut(s) | 213 |
| MalI | GATC | 3 cut(s) | 147, 486, 741 |
| MboI | GATC | 3 cut(s) | 145, 484, 739 |
| MboII | GAAGA | 5 cut(s) | 248, 443, 662, 664, 667 |
| MfeI | CAATTG | 1 cut(s) | 237 |
| MluCI | AATT | 6 cut(s) | 237, 319, 391, 598, 607, 657 |
| MlyI | GAGTC | 2 cut(s) | 245, 692 |
| MmeI | TCCRAC | 3 cut(s) | 448, 703, 741 |
| MnlI | CCTC | 6 cut(s) | 198, 427, 464, 544, 607, 677 |
| MspR9I | CCNGG | 1 cut(s) | 689 |
| MunI | CAATTG | 1 cut(s) | 237 |
| Mva1269I | GAATGC | 1 cut(s) | 345 |
| MvaI | CCWGG | 1 cut(s) | 689 |
| NdeII | GATC | 3 cut(s) | 145, 484, 739 |
| NlaIII | CATG | 3 cut(s) | 96, 112, 491 |
| NlaIV | GGNNCC | 1 cut(s) | 88 |
| NspV | TTCGAA | 1 cut(s) | 594 |
| PctI | GAATGC | 1 cut(s) | 345 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 83 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 2 cut(s) | 245, 692 |
| PpsI | GAGTC | 2 cut(s) | 245, 692 |
| Psp6I | CCWGG | 1 cut(s) | 687 |
| PspGI | CCWGG | 1 cut(s) | 687 |
| PspN4I | GGNNCC | 1 cut(s) | 88 |
| PspPI | GGNCC | 1 cut(s) | 473 |
| RsaI | GTAC | 1 cut(s) | 201 |
| RsaNI | GTAC | 1 cut(s) | 200 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 3 cut(s) | 145, 484, 739 |
| Sau96I | GGNCC | 1 cut(s) | 473 |
| SchI | GAGTC | 2 cut(s) | 245, 692 |
| ScrFI | CCNGG | 1 cut(s) | 689 |
| SfaNI | GCATC | 1 cut(s) | 714 |
| SfcI | CTRYAG | 2 cut(s) | 426, 664 |
| SfuI | TTCGAA | 1 cut(s) | 594 |
| SinI | GGWCC | 1 cut(s) | 473 |
| Sse9I | AATT | 6 cut(s) | 237, 319, 391, 598, 607, 657 |
| SsiI | CCGC | 1 cut(s) | 69 |
| SspMI | CTAG | 4 cut(s) | 45, 209, 248, 267 |
| StyD4I | CCNGG | 1 cut(s) | 687 |
| TaaI | ACNGT | 4 cut(s) | 134, 287, 477, 668 |
| TaiI | ACGT | 3 cut(s) | 222, 418, 736 |
| TaqI | TCGA | 1 cut(s) | 594 |
| TasI | AATT | 6 cut(s) | 237, 319, 391, 598, 607, 657 |
| TauI | GCSGC | 1 cut(s) | 71 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| TscAI | CASTG | 1 cut(s) | 673 |
| TspDTI | ATGAA | 5 cut(s) | 155, 279, 359, 572, 663 |
| TspGWI | ACGGA | 1 cut(s) | 764 |
| TspRI | CASTG | 1 cut(s) | 673 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 83 |
| VpaK11BI | GGWCC | 1 cut(s) | 473 |
| XapI | RAATTY | 2 cut(s) | 391, 598 |
| XbaI | TCTAGA | 2 cut(s) | 208, 247 |
| XspI | CTAG | 4 cut(s) | 45, 209, 248, 267 |