FvH4_4g17570

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010256
Physical Location & Seq
Forward (+)
21493800 .. 21496697
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17570.t1

Sequence Viewer

Length: 849 bp
ATGGAATCGTCCACCGCTTCACCGCCGGGGACAAGAAGCGGCCGCCGCGAGAAGCTGTTACGGAGAGTAATATTGCCGTCGATCCGAGGGCAAAACTGTCCAATATGCTTAGGAAGCCTCGAACCTCGCAGCGCGGCGGTGCTGGAGGCGTGTAAGCACGCGTACTGCCTCCGATGCATTCGCAAGTGGAGCACTTTGAGACGAAAATGCCCTCTCTGTAATTCCATCTTCGAGTCTTGGTTCGATACTATCAGCCTTTCTTCTCGAAGTTTCCGCCGGGAGATTTTACCTCCGCTCAATACTAACGCTTCTGCAACCGGAACTAGAAGCCTTCACGATGCACATCCAAGGAATGTGATGAATGAGCGGCGGCGATCACGGCCGTTGCCGTGGCGGCGTTCGTTTGGACGGCCGGGATCTGTGGCTGCTGATGTCATTGCTGAGAGGAAGCTTCAATGGCGCGCAAGTATATATGGAAGACGATTGCAAGCGGTTGCTTCAGCTCCAAGAAACCGTGTTCAAGTGAGTGCGCCGGTTAATGATTTGGTGAAAGAGAGAGTGTTGCAAAGAGTGGAGCCTTGGATTAGAAGAGAGCTGCAGGTTATTCTTGGTGACAGAGATCCATCTGTTGTTGTTCATGTGGTCACCTCACTCTACACTGCGAGCCTTGACAAGAAGGATTCTGTCTCTTCGGGGCAACATGATGTACTGGATAACTTCCTTGAGCCGTTGCGCCCTTTCTTGCTTGAACGAACTGATATGTTTTGGCATGAACTAAGATGTTTTGCAGAGAGTCCGTTTAACATGCAAACATATGATGCTGTTGTTGAGTACAGAAGGCTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000209 GO:0000922 GO:0000930 GO:0001654 GO:0001754 GO:0003407 GO:0003674 GO:0003676 GO:0003677 GO:0003823 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005819 GO:0005856 GO:0005929 GO:0006139 GO:0006351 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007423 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008630 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009653 GO:0009887 GO:0009893 GO:0009987 GO:0010467 GO:0010498 GO:0010604 GO:0010842 GO:0010941 GO:0012501 GO:0015630 GO:0016043 GO:0016070 GO:0016567 GO:0016604 GO:0016605 GO:0016607 GO:0016740 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022008 GO:0023052 GO:0030154 GO:0030163 GO:0030182 GO:0030496 GO:0031323 GO:0031325 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032391 GO:0032446 GO:0032501 GO:0032502 GO:0032507 GO:0032774 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0035845 GO:0035869 GO:0036064 GO:0036211 GO:0042461 GO:0042462 GO:0042670 GO:0042981 GO:0042995 GO:0043005 GO:0043010 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044451 GO:0044463 GO:0044464 GO:0044547 GO:0045185 GO:0046483 GO:0046530 GO:0046548 GO:0046549 GO:0048468 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048592 GO:0048593 GO:0048646 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051235 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051457 GO:0051603 GO:0051641 GO:0051651 GO:0051716 GO:0060041 GO:0060042 GO:0060219 GO:0060255 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0070936 GO:0071704 GO:0071840 GO:0072595 GO:0080090 GO:0090304 GO:0090596 GO:0097159 GO:0097190 GO:0097193 GO:0097458 GO:0097659 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1902494 GO:1903320 GO:1903322 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWI zf-C3HC4 zf-C3HC4_3 zf-RING_2

Protein Analysis

283

Amino Acids

32.38

Weight (kDa)

10.41

Isoelectric Point (pI)

70.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 31 - 74 3e-06 RING-H2 zinc finger domain
zf-C3HC4_3 PF13920 31 - 77 8e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 32 - 74 3e-09 Ring finger domain
zf-C3HC4_2 PF13923 32 - 73 2.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 32 - 74 3.7e-07 zinc-RING finger domain
zf-C3HC4 PF00097 33 - 73 4.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 33 - 71 8.9e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 589
AccBSI CCGCTC 2 cut(s) 295, 367
AccII CGCG 4 cut(s) 48, 134, 161, 462
AclWI GGATC 3 cut(s) 76, 424, 614
AcoI YGGCCR 3 cut(s) 40, 380, 410
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 3 cut(s) 164, 708, 833
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 3 cut(s) 455, 521, 749
AluBI AGCT 4 cut(s) 55, 451, 503, 595
AluI AGCT 4 cut(s) 55, 451, 503, 595
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 2 cut(s) 193, 691
AlwI GGATC 3 cut(s) 76, 424, 614
AoxI GGCC 3 cut(s) 40, 380, 410
ApeKI GCWGC 3 cut(s) 129, 425, 595
AspLEI GCGC 5 cut(s) 134, 462, 464, 532, 735
AsuC2I CCSGG 3 cut(s) 27, 278, 414
AsuHPI GGTGA 4 cut(s) 12, 559, 623, 637
BbsI GAAGAC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 3 cut(s) 141, 412, 582
BccI CCATC 2 cut(s) 233, 631
BceAI ACGGC 6 cut(s) 61, 367, 373, 395, 425, 712
BcnI CCSGG 3 cut(s) 27, 278, 414
BcoDI GTCTC 2 cut(s) 193, 691
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 596
BfuAI ACCTGC 1 cut(s) 589
BglI GCCNNNNNGGC 1 cut(s) 394
Bme1390I CCNGG 3 cut(s) 27, 278, 414
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 3 cut(s) 27, 278, 414
BmsI GCATC 3 cut(s) 164, 328, 808
BpiI GAAGAC 1 cut(s) 484
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 3 cut(s) 27, 278, 414
BsaBI GATNNNNATC 1 cut(s) 342
BsaJI CCNNGG 5 cut(s) 26, 85, 347, 389, 578
BsaWI WCCGGW 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 714
Bse3DI GCAATG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 5 cut(s) 26, 85, 347, 389, 578
BseGI GGATG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 342
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 432, 833
BseNI ACTGG 1 cut(s) 714
BsePI GCGCGC 1 cut(s) 460
BseX3I CGGCCG 3 cut(s) 40, 380, 410
BseXI GCAGC 3 cut(s) 141, 412, 582
Bsh1236I CGCG 4 cut(s) 48, 134, 161, 462
Bsh1285I CGRYCG 3 cut(s) 43, 383, 413
BshFI GGCC 3 cut(s) 42, 382, 412
BsiEI CGRYCG 3 cut(s) 43, 383, 413
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 5 cut(s) 26, 277, 318, 413, 533
BslFI GGGAC 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 193, 691
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 3 cut(s) 42, 382, 412
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 81, 374, 416, 619
BspANI GGCC 3 cut(s) 42, 382, 412
BspCNI CTCAG 2 cut(s) 433, 834
BspFNI CGCG 4 cut(s) 48, 134, 161, 462
BspLI GGNNCC 1 cut(s) 576
BspMAI CTGCAG 1 cut(s) 600
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 3 cut(s) 76, 424, 614
BsrBI CCGCTC 2 cut(s) 295, 367
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 1 cut(s) 714
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 5 cut(s) 26, 85, 347, 389, 578
BssHII GCGCGC 1 cut(s) 460
BssMI GATC 4 cut(s) 81, 374, 416, 619
BssT1I CCWWGG 2 cut(s) 347, 578
Bst4CI ACNGT 2 cut(s) 98, 515
Bst6I CTCTTC 2 cut(s) 583, 694
BstC8I GCNNGC 4 cut(s) 159, 462, 489, 664
BstDEI CTNAG 4 cut(s) 109, 441, 776, 842
BstDSI CCRYGG 1 cut(s) 389
BstEII GGTNACC 1 cut(s) 643
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 4 cut(s) 48, 134, 161, 462
BstHHI GCGC 5 cut(s) 134, 462, 464, 532, 735
BstKTI GATC 4 cut(s) 84, 377, 419, 622
BstMAI GTCTC 2 cut(s) 193, 691
BstMBI GATC 4 cut(s) 81, 374, 416, 619
BstMCI CGRYCG 3 cut(s) 43, 383, 413
BstMWI GCNNNNNNNGC 7 cut(s) 45, 114, 174, 189, 379, 394, 457
BstNSI RCATGY 1 cut(s) 808
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 3 cut(s) 25, 276, 412
BstSFI CTRYAG 1 cut(s) 596
BstUI CGCG 4 cut(s) 48, 134, 161, 462
BstV1I GCAGC 3 cut(s) 141, 412, 582
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 2 cut(s) 416, 619
BstYI RGATCY 2 cut(s) 416, 619
BstZI CGGCCG 3 cut(s) 40, 380, 410
BsuRI GGCC 3 cut(s) 42, 382, 412
BtgI CCRYGG 1 cut(s) 389
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 657
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 4 cut(s) 159, 462, 489, 664
CciNI GCGGCCGC 1 cut(s) 40
CfoI GCGC 5 cut(s) 134, 462, 464, 532, 735
Cfr10I RCCGGY 1 cut(s) 532
Csp6I GTAC 3 cut(s) 163, 707, 832
CviAII CATG 4 cut(s) 638, 701, 770, 805
CviQI GTAC 3 cut(s) 163, 707, 832
DdeI CTNAG 4 cut(s) 109, 441, 776, 842
DpnI GATC 4 cut(s) 83, 376, 418, 621
DpnII GATC 4 cut(s) 81, 374, 416, 619
EaeI YGGCCR 3 cut(s) 40, 380, 410
EagI CGGCCG 3 cut(s) 40, 380, 410
Eam1104I CTCTTC 2 cut(s) 583, 694
EarI CTCTTC 2 cut(s) 583, 694
EciI GGCGGA 1 cut(s) 263
EclXI CGGCCG 3 cut(s) 40, 380, 410
Eco130I CCWWGG 2 cut(s) 347, 578
Eco52I CGGCCG 3 cut(s) 40, 380, 410
Eco57I CTGAAG 1 cut(s) 483
Eco91I GGTNACC 1 cut(s) 643
EcoO65I GGTNACC 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 347, 578
EcoT22I ATGCAT 1 cut(s) 179
ErhI CCWWGG 2 cut(s) 347, 578
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 4 cut(s) 641, 704, 773, 808
FaqI GGGAC 1 cut(s) 43
FatI CATG 4 cut(s) 637, 700, 769, 804
FauNDI CATATG 1 cut(s) 814
FokI GGATG 1 cut(s) 330
FspBI CTAG 1 cut(s) 324
GlaI GCGC 5 cut(s) 133, 461, 463, 531, 734
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 3 cut(s) 42, 382, 412
HapII CCGG 5 cut(s) 26, 277, 318, 413, 533
HhaI GCGC 5 cut(s) 134, 462, 464, 532, 735
Hin1II CATG 4 cut(s) 641, 704, 773, 808
Hin6I GCGC 5 cut(s) 132, 460, 462, 530, 733
HinP1I GCGC 5 cut(s) 132, 460, 462, 530, 733
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 4 cut(s) 5, 233, 680, 793
HpaII CCGG 5 cut(s) 26, 277, 318, 413, 533
HphI GGTGA 4 cut(s) 12, 559, 623, 637
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 86, 173
Hpy188III TCNNGA 2 cut(s) 264, 335
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 3 cut(s) 341, 670, 831
HpyCH4III ACNGT 2 cut(s) 98, 515
HpyCH4V TGCA 8 cut(s) 177, 314, 341, 487, 565, 598, 788, 808
HpyF10VI GCNNNNNNNGC 7 cut(s) 45, 114, 174, 189, 379, 394, 457
HpyF3I CTNAG 4 cut(s) 109, 441, 776, 842
Hsp92II CATG 4 cut(s) 641, 704, 773, 808
HspAI GCGC 5 cut(s) 132, 460, 462, 530, 733
Kzo9I GATC 4 cut(s) 81, 374, 416, 619
LmnI GCTCC 3 cut(s) 189, 508, 574
LpnPI CCDG 8 cut(s) 39, 128, 290, 331, 426, 546, 584, 695
Lsp1109I GCAGC 3 cut(s) 141, 412, 582
LweI GCATC 3 cut(s) 164, 328, 808
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 3 cut(s) 57, 611, 643
MalI GATC 4 cut(s) 83, 376, 418, 621
MbiI CCGCTC 2 cut(s) 295, 367
MboI GATC 4 cut(s) 81, 374, 416, 619
MboII GAAGA 5 cut(s) 220, 252, 489, 600, 681
MflI RGATCY 2 cut(s) 416, 619
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 1 cut(s) 220
MluI ACGCGT 1 cut(s) 159
MlyI GAGTC 2 cut(s) 242, 802
MnlI CCTC 9 cut(s) 80, 128, 135, 139, 179, 222, 300, 438, 658
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 2 cut(s) 537, 801
MspI CCGG 5 cut(s) 26, 277, 318, 413, 533
MspR9I CCNGG 3 cut(s) 27, 278, 414
Mva1269I GAATGC 1 cut(s) 177
MvnI CGCG 4 cut(s) 48, 134, 161, 462
MwoI GCNNNNNNNGC 7 cut(s) 45, 114, 174, 189, 379, 394, 457
NciI CCSGG 3 cut(s) 27, 278, 414
NdeI CATATG 1 cut(s) 814
NdeII GATC 4 cut(s) 81, 374, 416, 619
NlaIII CATG 4 cut(s) 641, 704, 773, 808
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 2 cut(s) 611, 643
NotI GCGGCCGC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 1 cut(s) 808
PauI GCGCGC 1 cut(s) 460
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 5, 680
PleI GAGTC 2 cut(s) 241, 801
PpsI GAGTC 2 cut(s) 241, 801
PspEI GGTNACC 1 cut(s) 643
PspN4I GGNNCC 1 cut(s) 576
PstI CTGCAG 1 cut(s) 600
PsuI RGATCY 2 cut(s) 416, 619
PteI GCGCGC 1 cut(s) 460
RsaI GTAC 3 cut(s) 164, 708, 833
RsaNI GTAC 3 cut(s) 163, 707, 832
SaqAI TTAA 2 cut(s) 537, 801
Sau3AI GATC 4 cut(s) 81, 374, 416, 619
SchI GAGTC 2 cut(s) 242, 802
ScrFI CCNGG 3 cut(s) 27, 278, 414
SduI GDGCHC 1 cut(s) 194
SetI ASST 8 cut(s) 57, 127, 292, 453, 505, 597, 603, 650
SfaNI GCATC 3 cut(s) 164, 328, 808
SfcI CTRYAG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
Sse9I AATT 1 cut(s) 220
SspI AATATT 1 cut(s) 72
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 3 cut(s) 25, 276, 412
StyI CCWWGG 2 cut(s) 347, 578
TaaI ACNGT 2 cut(s) 98, 515
TaqI TCGA 5 cut(s) 80, 120, 231, 243, 265
TasI AATT 1 cut(s) 220
TatI WGTACW 2 cut(s) 706, 831
TauI GCSGC 7 cut(s) 42, 45, 48, 137, 370, 373, 397
TfiI GAWTC 2 cut(s) 5, 680
Tru1I TTAA 2 cut(s) 537, 801
Tru9I TTAA 2 cut(s) 537, 801
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 2 cut(s) 611, 643
TseI GCWGC 3 cut(s) 129, 425, 595
Tsp45I GTSAC 2 cut(s) 611, 643
TspDTI ATGAA 3 cut(s) 374, 626, 786
TspGWI ACGGA 2 cut(s) 76, 786
TspRI CASTG 1 cut(s) 664
XceI RCATGY 1 cut(s) 808
XspI CTAG 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.