AT2G39550

Prenyltransferase and squalene oxidase repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16501571 .. 16504379
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39550.1

Sequence Viewer

Length: 1128 bp
ATGTCAGAGACCGCCGTGTCAATCGATTCGGACCGATCTAAGTCGGAGGAAGAAGACGAAGAAGAGTATTCTCCACCGGTGCAATCATCTCCGTCAGCGAATTTCGAGAAAGATCGACACTTGATGTATTTGGAGATGATGTACGAGTTGCTTCCGTACCATTACCAATCTCAGGAGATCAATCGTCTTACACTCGCTCATTTCATAATCTCGGGTCTTCATTTTCTCGGCGCAAGAGACCGTGTTGATAAAGATGTTGTTGCAAAGTGGGTTTTGTCCTTCCAGGCCTTTCCTACTAACAGAGTTTCACTGAAAGATGGAGAATTCTATGGTTTCTTTGGTTCAAGGAGTTCTCAGTTTCCCATTGATGAGAATGGGGATTTAAAGCACAACGGTAGTCACTTGGCAAGCACTTACTGTGCTTTGGCTATTCTGAAGGTCATTGGACATGATCTCTCGACCATCGACTCAAAATCATTGCTAATTTCCATGATAAACCTTCAACAGGATGATGGAAGCTTCATGCCTATCCATATTGGAGGTGAAACGGATCTTCGATTTGTATATTGTGCAGCTGCAATCTGTTACATGCTGGATAGTTGGAGTGGAATGGATAAGGAGAGTGCTAAGAACTACATATTAAACTGTCAGTCATATGATGGTGGTTTTGGATTGATCCCTGGTTCTGAATCTCATGGTGGTGCCACTTACTGTGCTATTGCATCCCTTCGGTTGATGGGATACATTGGAGTTGATCTGCTGTCAAATGATTCATCCAGTTCAATAATAGACCCTTCATTACTTCTCAACTGGTGCCTACAGAGACAAGCAAATGATGGTGGGTTTCAAGGTAGGACTAACAAGCCAAGTGACACATGCTATGCATTTTGGATTGGAGCTGTCCTTAAACTTATAGGAGGCGATGCATTGATCGACAAAATGGCTCTGCGCAAATTTTTAATGAGTTGTCAGTCCAAGTATGGTGGATTCAGTAAATTCCCCGGACAATTACCAGATCTGTATCATTCATACTACGGTTACACGGCTTTTAGTCTCTTGGAAGAACAGGGCTTGAGTCCTCTATGTCCTGAGCTAGGTTTACCTCTTCTTGCAGCCCCGGGAATTTGA

Protein Analysis

375

Amino Acids

41.47

Weight (kDa)

4.93

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltrans PF00432 35 - 365 1.5e-99 Prenyltransferase alpha-alpha toroid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
Acc16I TGCGCA 1 cut(s) 950
AccB1I GGYRCC 2 cut(s) 701, 813
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 558, 670
AcsI RAATTY 5 cut(s) 100, 323, 953, 995, 1122
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 2 cut(s) 143, 158
AfiI CCNNNNNNNGG 3 cut(s) 172, 505, 1094
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 4 cut(s) 345, 503, 783, 848
AjnI CCWGG 2 cut(s) 282, 679
AluBI AGCT 4 cut(s) 519, 575, 899, 1093
AluI AGCT 4 cut(s) 519, 575, 899, 1093
Alw26I GTCTC 4 cut(s) 2, 231, 817, 1058
AlwI GGATC 2 cut(s) 558, 670
Ama87I CYCGRG 2 cut(s) 211, 1117
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 3 cut(s) 572, 575, 1112
ApoI RAATTY 5 cut(s) 100, 323, 953, 995, 1122
AsiGI ACCGGT 1 cut(s) 76
AspLEI GCGC 2 cut(s) 233, 951
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 3 cut(s) 1002, 1118, 1119
AsuHPI GGTGA 1 cut(s) 554
AvaI CYCGRG 2 cut(s) 211, 1117
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 2 cut(s) 701, 813
BbsI GAAGAC 2 cut(s) 60, 209
BbvI GCAGC 3 cut(s) 562, 584, 1124
BccI CCATC 6 cut(s) 311, 470, 506, 653, 730, 830
BceAI ACGGC 1 cut(s) 1059
BciT130I CCWGG 2 cut(s) 284, 681
BciVI GTATCC 1 cut(s) 734
BcnI CCSGG 3 cut(s) 1002, 1118, 1119
BcoDI GTCTC 4 cut(s) 2, 231, 817, 1058
BfaI CTAG 1 cut(s) 1094
BfmI CTRYAG 1 cut(s) 818
BfuI GTATCC 1 cut(s) 734
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 3 cut(s) 573, 576, 1113
BlsI GCNGC 3 cut(s) 574, 577, 1114
Bme1390I CCNGG 5 cut(s) 284, 681, 1002, 1118, 1119
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 2 cut(s) 211, 1117
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 703, 815
BmrFI CCNGG 5 cut(s) 284, 681, 1002, 1118, 1119
BmsI GCATC 2 cut(s) 731, 913
BpiI GAAGAC 2 cut(s) 60, 209
Bpu10I CCTNAGC 1 cut(s) 1089
BpuEI CTTGAG 1 cut(s) 1093
BpuMI CCSGG 3 cut(s) 1002, 1118, 1119
Bsa29I ATCGAT 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 1020
BsaI GGTCTC 2 cut(s) 2, 231
BsaJI CCNNGG 4 cut(s) 679, 1000, 1116, 1117
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 505, 1094
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 777, 815
Bse3DI GCAATG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 1020
BseBI CCWGG 2 cut(s) 284, 681
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 4 cut(s) 679, 1000, 1116, 1117
BseGI GGATG 3 cut(s) 514, 722, 773
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 3 cut(s) 172, 505, 1094
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 3 cut(s) 185, 368, 1080
BseNI ACTGG 2 cut(s) 777, 815
BseXI GCAGC 3 cut(s) 562, 584, 1124
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 2 cut(s) 701, 813
BshTI ACCGGT 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 24
BsiHKCI CYCGRG 2 cut(s) 211, 1117
BsiSI CCGG 3 cut(s) 77, 1002, 1118
BslI CCNNNNNNNGG 3 cut(s) 172, 505, 1094
BsmAI GTCTC 4 cut(s) 2, 231, 817, 1058
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 2 cut(s) 2, 231
BsoBI CYCGRG 2 cut(s) 211, 1117
Bsp143I GATC 9 cut(s) 35, 112, 177, 451, 550, 675, 754, 930, 1015
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 3 cut(s) 184, 367, 1081
BspDI ATCGAT 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 703, 815
BspPI GGATC 2 cut(s) 558, 670
BspT107I GGYRCC 2 cut(s) 701, 813
BspTNI GGTCTC 2 cut(s) 2, 231
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 2 cut(s) 777, 815
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 4 cut(s) 679, 1000, 1116, 1117
BssMI GATC 9 cut(s) 35, 112, 177, 451, 550, 675, 754, 930, 1015
Bst2UI CCWGG 2 cut(s) 284, 681
Bst4CI ACNGT 6 cut(s) 242, 395, 419, 647, 713, 1037
Bst6I CTCTTC 2 cut(s) 57, 1110
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 5 cut(s) 39, 171, 354, 627, 1089
BstENI CCTNNNNNAGG 2 cut(s) 503, 1092
BstF5I GGATG 3 cut(s) 514, 722, 773
BstHHI GCGC 2 cut(s) 233, 951
BstKTI GATC 9 cut(s) 38, 115, 180, 454, 553, 678, 757, 933, 1018
BstMAI GTCTC 4 cut(s) 2, 231, 817, 1058
BstMBI GATC 9 cut(s) 35, 112, 177, 451, 550, 675, 754, 930, 1015
BstNI CCWGG 2 cut(s) 284, 681
BstNSI RCATGY 2 cut(s) 592, 879
BstSCI CCNGG 5 cut(s) 282, 679, 1000, 1116, 1117
BstSFI CTRYAG 1 cut(s) 818
BstV1I GCAGC 3 cut(s) 562, 584, 1124
BstV2I GAAGAC 2 cut(s) 60, 209
BstX2I RGATCY 2 cut(s) 550, 1015
BstYI RGATCY 2 cut(s) 550, 1015
Bsu15I ATCGAT 1 cut(s) 24
BsuI GTATCC 1 cut(s) 734
BsuRI GGCC 1 cut(s) 287
BsuTUI ATCGAT 1 cut(s) 24
BtgZI GCGATG 1 cut(s) 936
BtsCI GGATG 3 cut(s) 514, 722, 773
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 409
CfoI GCGC 2 cut(s) 233, 951
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 31
Cfr9I CCCGGG 1 cut(s) 1117
ClaI ATCGAT 1 cut(s) 24
CpoI CGGWCCG 1 cut(s) 31
Csp6I GTAC 2 cut(s) 142, 157
CspAI ACCGGT 1 cut(s) 76
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CspI CGGWCCG 1 cut(s) 31
CviAII CATG 6 cut(s) 449, 490, 523, 589, 695, 876
CviQI GTAC 2 cut(s) 142, 157
DdeI CTNAG 5 cut(s) 39, 171, 354, 627, 1089
DpnI GATC 9 cut(s) 37, 114, 179, 453, 552, 677, 756, 932, 1017
DpnII GATC 9 cut(s) 35, 112, 177, 451, 550, 675, 754, 930, 1015
DraI TTTAAA 1 cut(s) 384
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 57, 1110
EarI CTCTTC 2 cut(s) 57, 1110
Eco147I AGGCCT 1 cut(s) 287
Eco31I GGTCTC 2 cut(s) 2, 231
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 2 cut(s) 211, 1117
EcoNI CCTNNNNNAGG 2 cut(s) 503, 1092
EcoRI GAATTC 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 282, 679
EcoT22I ATGCAT 2 cut(s) 886, 928
FaeI CATG 6 cut(s) 452, 493, 526, 592, 698, 879
FatI CATG 6 cut(s) 448, 489, 522, 588, 694, 875
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 3 cut(s) 573, 576, 1113
FokI GGATG 3 cut(s) 521, 709, 760
Fsp4HI GCNGC 3 cut(s) 573, 576, 1113
FspBI CTAG 1 cut(s) 1094
FspI TGCGCA 1 cut(s) 950
GlaI GCGC 2 cut(s) 232, 950
GluI GCNGC 3 cut(s) 573, 576, 1113
HaeIII GGCC 1 cut(s) 287
HapII CCGG 3 cut(s) 77, 1002, 1118
HhaI GCGC 2 cut(s) 233, 951
Hin1II CATG 6 cut(s) 452, 493, 526, 592, 698, 879
Hin6I GCGC 2 cut(s) 231, 949
HinP1I GCGC 2 cut(s) 231, 949
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 6 cut(s) 26, 467, 689, 770, 987, 1075
HpaII CCGG 3 cut(s) 77, 1002, 1118
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 1100
Hpy188I TCNGA 5 cut(s) 7, 31, 46, 435, 688
Hpy188III TCNNGA 4 cut(s) 106, 173, 457, 1088
Hpy8I GTNNAC 1 cut(s) 1100
HpyAV CCTTC 5 cut(s) 289, 430, 509, 737, 804
HpyCH4III ACNGT 6 cut(s) 242, 395, 419, 647, 713, 1037
HpyCH4V TGCA 8 cut(s) 82, 263, 572, 578, 722, 884, 926, 1112
HpyF3I CTNAG 5 cut(s) 39, 171, 354, 627, 1089
Hsp92II CATG 6 cut(s) 452, 493, 526, 592, 698, 879
HspAI GCGC 2 cut(s) 231, 949
Kzo9I GATC 9 cut(s) 35, 112, 177, 451, 550, 675, 754, 930, 1015
LmnI GCTCC 1 cut(s) 896
Lsp1109I GCAGC 3 cut(s) 562, 584, 1124
LweI GCATC 2 cut(s) 731, 913
MaeI CTAG 1 cut(s) 1094
MaeIII GTNAC 4 cut(s) 398, 584, 869, 1037
MalI GATC 9 cut(s) 37, 114, 179, 453, 552, 677, 756, 932, 1017
MboI GATC 9 cut(s) 35, 112, 177, 451, 550, 675, 754, 930, 1015
MboII GAAGA 8 cut(s) 62, 65, 71, 74, 209, 545, 1073, 1097
MflI RGATCY 2 cut(s) 550, 1015
MluCI AATT 7 cut(s) 100, 323, 483, 953, 995, 1007, 1122
MlyI GAGTC 2 cut(s) 461, 1084
MmeI TCCRAC 2 cut(s) 24, 581
MnlI CCTC 5 cut(s) 40, 533, 911, 1089, 1113
Mph1103I ATGCAT 2 cut(s) 886, 928
MseI TTAA 4 cut(s) 383, 641, 906, 959
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 3 cut(s) 77, 1002, 1118
MspR9I CCNGG 5 cut(s) 284, 681, 1002, 1118, 1119
MvaI CCWGG 2 cut(s) 284, 681
NciI CCSGG 3 cut(s) 1002, 1118, 1119
NdeI CATATG 1 cut(s) 655
NdeII GATC 9 cut(s) 35, 112, 177, 451, 550, 675, 754, 930, 1015
NlaIII CATG 6 cut(s) 452, 493, 526, 592, 698, 879
NlaIV GGNNCC 2 cut(s) 703, 815
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 398, 869
NsbI TGCGCA 1 cut(s) 950
NsiI ATGCAT 2 cut(s) 886, 928
NspI RCATGY 2 cut(s) 592, 879
PceI AGGCCT 1 cut(s) 287
PfeI GAWTC 4 cut(s) 26, 689, 770, 987
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 3 cut(s) 574, 577, 1114
PleI GAGTC 2 cut(s) 461, 1083
PpsI GAGTC 2 cut(s) 461, 1083
Psp6I CCWGG 2 cut(s) 282, 679
PspGI CCWGG 2 cut(s) 282, 679
PspN4I GGNNCC 2 cut(s) 703, 815
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 2 cut(s) 550, 1015
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 143, 158
RsaNI GTAC 2 cut(s) 142, 157
RseI CAYNNNNRTG 1 cut(s) 699
Rsr2I CGGWCCG 1 cut(s) 31
RsrII CGGWCCG 1 cut(s) 31
SaqAI TTAA 4 cut(s) 383, 641, 906, 959
SatI GCNGC 3 cut(s) 573, 576, 1113
Sau3AI GATC 9 cut(s) 35, 112, 177, 451, 550, 675, 754, 930, 1015
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 2 cut(s) 461, 1084
ScrFI CCNGG 5 cut(s) 284, 681, 1002, 1118, 1119
SfaNI GCATC 2 cut(s) 731, 913
SfcI CTRYAG 1 cut(s) 818
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 1 cut(s) 31
SmaI CCCGGG 1 cut(s) 1119
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 1072
SmoI CTYRAG 1 cut(s) 1072
Sse9I AATT 7 cut(s) 100, 323, 483, 953, 995, 1007, 1122
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 1094
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 5 cut(s) 282, 679, 1000, 1116, 1117
TaaI ACNGT 6 cut(s) 242, 395, 419, 647, 713, 1037
TaqI TCGA 7 cut(s) 24, 105, 115, 458, 465, 556, 933
TaqII GACCGA 1 cut(s) 48
TasI AATT 7 cut(s) 100, 323, 483, 953, 995, 1007, 1122
TfiI GAWTC 4 cut(s) 26, 689, 770, 987
Tru1I TTAA 4 cut(s) 383, 641, 906, 959
Tru9I TTAA 4 cut(s) 383, 641, 906, 959
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 2 cut(s) 398, 869
TseI GCWGC 3 cut(s) 572, 575, 1112
Tsp45I GTSAC 2 cut(s) 398, 869
TspDTI ATGAA 6 cut(s) 193, 209, 511, 762, 786, 1017
TspGWI ACGGA 3 cut(s) 81, 144, 563
TspMI CCCGGG 1 cut(s) 1117
TspRI CASTG 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 31
XagI CCTNNNNNAGG 2 cut(s) 503, 1092
XapI RAATTY 5 cut(s) 100, 323, 953, 995, 1122
XceI RCATGY 2 cut(s) 592, 879
XmaI CCCGGG 1 cut(s) 1117
XspI CTAG 1 cut(s) 1094
Zsp2I ATGCAT 2 cut(s) 886, 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.