Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007760

Physical Location & Seq

Genomic Coordinates Forward (+)

10512576 .. 10515978

Gene Structure 3403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAATCGGAGCCATTCGAGAGAGAAAAGCACGTGACTTTTCTGGAGATGATGTACCGGCTCCTCCCACACCAGTACCAGACCCAAGAGATCAACCGCCTCACTCTCGCCTACTTCGTCGTCTCCGGCCTCGACCTCCTCCGCGCTCTCCACCGCATTGACAAGGACGCCGTTGCCGATTGGGTTCTGTCACTCCAAGCTCGCCCAAGTGACAGCGACCAAGTCAACAATGGGCAATTCTATGGGTTTTATGGTTCCAGAAGCTCTCAATTTTCTCCTCAAGATGATAATAATGGGGCTTCGAGTTCCGGTATCAGTAACTTGGCAAGCACGTATTGTGCTTTGGCCATACTGAAAATTATCGGCTATGACTTGTCTAGTATCGACTCTGAGTCGTTATTGAAGTCGATGAGGAACCTTCAACAGCCTGATGGGAGTTTTATGCCTATACATACAGGGGCGGAGACTGATCTGCGATTCGTTTATTGTGCTGCTGCGATTTGTCATATGTTGGGAAATTGGAGTGGCATGGACAAGGAGAGAGCCAAGGAGTACATAATAAATTGCCAGTCATATGATGGTGGATTTGGGTTGACTCCTGGTGCAGAATCTCATGGTGGTGCAATTTATTGTGGTATTACATCTCTCCGTTTGATGGGATTCCTTGAAGAGGATGTACTTTCCAAAAATGCGTCATCCTCCATAGTAAATGTGCCTCTGCTGCTGGTTTGGTGCTTACAGAGGCAGGCAGCTGATGGTGGATTCCAGGGTAGACCCAACAAGCCTAGTGACACATGTTATGCATTTTGGATTTTATCAGTTTTGAAGATTTTGGGGGGCACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

282

Amino Acids

31.18

Weight (kDa)

5.23

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	6 - 279	5.7e-81	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39550
fragaria_vesca	FvH4_7g22110 FvH4_7g22110 FvH4_7g22110
malus_domestica	MD01G1126400.v1.1 MD07G1196300.v1.1
prunus_persica	Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1
pyrus_communis	pycom01g15210 pycom07g18440
rosa_chinensis	RchiOBHm_Chr1g0366501
rosa_laevigata	RLG00000027342
rosa_multiflora	Rmu_ssc0000250.1_g000021
rosa_roxburghii	Rroxscaffold_4G00289870 Rroxscaffold_4G00290130
rosa_rugosa	Rorug01G0330500 Rorug01G0330500
rosa_samantha	Rh1AG338400 Rh1BG299900 Rh1CG315000 Rh1DG331700
rosa_wichuraiana	Rw1G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	772
AccII	CGCG	1 cut(s)	144
AciI	CCGC	4 cut(s)	97, 142, 154, 461
AcoI	YGGCCR	1 cut(s)	345
AcvI	CACGTG	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	4 cut(s)	56, 77, 554, 678
AfiI	CCNNNNNNNGG	2 cut(s)	655, 670
AflIII	ACRYGT	1 cut(s)	794
AgsI	TTSAA	4 cut(s)	403, 422, 668, 826
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	598, 765
AluBI	AGCT	3 cut(s)	200, 264, 752
AluI	AGCT	3 cut(s)	200, 264, 752
Alw26I	GTCTC	2 cut(s)	127, 458
AoxI	GGCC	2 cut(s)	127, 345
ApeKI	GCWGC	4 cut(s)	491, 494, 721, 749
AspLEI	GCGC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	842
BaeI	ACNNNNGTAYC	2 cut(s)	59, 92
BalI	TGGCCA	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
BbrPI	CACGTG	1 cut(s)	34
BbvI	GCAGC	4 cut(s)	478, 481, 708, 761
BccI	CCATC	4 cut(s)	425, 572, 649, 749
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	600, 767
BcoDI	GTCTC	2 cut(s)	127, 458
BfaI	CTAG	2 cut(s)	378, 786
BisI	GCNGC	4 cut(s)	492, 495, 722, 750
BlsI	GCNGC	4 cut(s)	493, 496, 723, 751
Bme1390I	CCNGG	2 cut(s)	600, 767
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmiI	GGNNCC	4 cut(s)	12, 62, 256, 416
BmrFI	CCNGG	2 cut(s)	600, 767
BpmI	CTGGAG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	264
BsaAI	YACGTR	2 cut(s)	34, 333
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	546, 766
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	655, 670
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	2 cut(s)	73, 568
BseBI	CCWGG	2 cut(s)	600, 767
BseDI	CCNNGG	2 cut(s)	546, 766
BseGI	GGATG	2 cut(s)	679, 695
BseLI	CCNNNNNNNGG	2 cut(s)	655, 670
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	73, 568
BseRI	GAGGAG	3 cut(s)	53, 128, 267
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	4 cut(s)	478, 481, 708, 761
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	129, 347
BsiSI	CCGG	3 cut(s)	58, 126, 309
BslI	CCNNNNNNNGG	2 cut(s)	655, 670
BsmAI	GTCTC	2 cut(s)	127, 458
BsmBI	CGTCTC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	129, 347
Bsp1286I	GDGCHC	1 cut(s)	842
Bsp143I	GATC	2 cut(s)	90, 469
BspACI	CCGC	4 cut(s)	97, 142, 154, 461
BspANI	GGCC	2 cut(s)	129, 347
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	4 cut(s)	12, 62, 256, 416
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	73, 568
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	546, 766
BssMI	GATC	2 cut(s)	90, 469
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	600, 767
Bst6I	CTCTTC	1 cut(s)	663
BstACI	GRCGYC	1 cut(s)	168
BstBAI	YACGTR	2 cut(s)	34, 333
BstC8I	GCNNGC	3 cut(s)	202, 328, 747
BstDEI	CTNAG	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	668
BstF5I	GGATG	2 cut(s)	679, 695
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	93, 472
BstMAI	GTCTC	2 cut(s)	127, 458
BstMBI	GATC	2 cut(s)	90, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	721
BstNI	CCWGG	2 cut(s)	600, 767
BstNSI	RCATGY	1 cut(s)	798
BstSCI	CCNGG	2 cut(s)	598, 765
BstSLI	GKGCMC	1 cut(s)	842
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	478, 481, 708, 761
BsuRI	GGCC	2 cut(s)	129, 347
BtsCI	GGATG	2 cut(s)	679, 695
Cac8I	GCNNGC	3 cut(s)	202, 328, 747
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	57
CseI	GACGC	2 cut(s)	176, 681
Csp6I	GTAC	4 cut(s)	55, 76, 553, 677
CviAII	CATG	3 cut(s)	529, 614, 795
CviQI	GTAC	4 cut(s)	55, 76, 553, 677
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	92, 471
DpnII	GATC	2 cut(s)	90, 469
DriI	GACNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	663
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	546
Eco72I	CACGTG	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	598, 765
EcoT14I	CCWWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	3 cut(s)	532, 617, 798
FatI	CATG	3 cut(s)	528, 613, 794
FauNDI	CATATG	2 cut(s)	507, 574
FblI	GTMKAC	1 cut(s)	772
Fnu4HI	GCNGC	4 cut(s)	492, 495, 722, 750
FokI	GGATG	2 cut(s)	682, 686
Fsp4HI	GCNGC	4 cut(s)	492, 495, 722, 750
FspBI	CTAG	2 cut(s)	378, 786
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	4 cut(s)	492, 495, 722, 750
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	129, 347
HapII	CCGG	3 cut(s)	58, 126, 309
HgaI	GACGC	2 cut(s)	176, 681
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	532, 617, 798
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	2 cut(s)	226, 594
HindII	GTYRAC	2 cut(s)	226, 594
HinfI	GANTC	8 cut(s)	5, 386, 392, 477, 595, 608, 660, 762
HpaII	CCGG	3 cut(s)	58, 126, 309
Hpy166II	GTNNAC	3 cut(s)	226, 594, 773
Hpy188I	TCNGA	2 cut(s)	10, 391
Hpy188III	TCNNGA	4 cut(s)	19, 44, 258, 281
Hpy8I	GTNNAC	3 cut(s)	226, 594, 773
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	33, 332
HpyCH4V	TGCA	3 cut(s)	605, 623, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	721
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	2 cut(s)	33, 332
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	532, 617, 798
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	90, 469
LmnI	GCTCC	2 cut(s)	10, 66
Lsp1109I	GCAGC	4 cut(s)	478, 481, 708, 761
MaeI	CTAG	2 cut(s)	378, 786
MaeII	ACGT	2 cut(s)	33, 332
MaeIII	GTNAC	5 cut(s)	34, 189, 209, 317, 788
MalI	GATC	2 cut(s)	92, 471
MboI	GATC	2 cut(s)	90, 469
MboII	GAAGA	2 cut(s)	680, 838
MhlI	GDGCHC	1 cut(s)	842
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	7 cut(s)	236, 269, 357, 517, 562, 624, 844
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	3 cut(s)	380, 401, 589
Mox20I	TGGCCA	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	3 cut(s)	58, 126, 309
MspR9I	CCNGG	2 cut(s)	600, 767
MvaI	CCWGG	2 cut(s)	600, 767
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	721
NdeI	CATATG	2 cut(s)	507, 574
NdeII	GATC	2 cut(s)	90, 469
NlaIII	CATG	3 cut(s)	532, 617, 798
NlaIV	GGNNCC	4 cut(s)	12, 62, 256, 416
NmuCI	GTSAC	4 cut(s)	34, 189, 209, 788
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	798
PciI	ACATGT	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 174
PfeI	GAWTC	5 cut(s)	5, 477, 608, 660, 762
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	493, 496, 723, 751
PleI	GAGTC	3 cut(s)	380, 400, 589
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
PpsI	GAGTC	3 cut(s)	380, 400, 589
Ppu21I	YACGTR	2 cut(s)	34, 333
PscI	ACATGT	1 cut(s)	794
Psp6I	CCWGG	2 cut(s)	598, 765
PspCI	CACGTG	1 cut(s)	34
PspGI	CCWGG	2 cut(s)	598, 765
PspN4I	GGNNCC	4 cut(s)	12, 62, 256, 416
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	4 cut(s)	56, 77, 554, 678
RsaNI	GTAC	4 cut(s)	55, 76, 553, 677
RseI	CAYNNNNRTG	1 cut(s)	618
SatI	GCNGC	4 cut(s)	492, 495, 722, 750
Sau3AI	GATC	2 cut(s)	90, 469
SchI	GAGTC	3 cut(s)	380, 401, 589
ScrFI	CCNGG	2 cut(s)	600, 767
SduI	GDGCHC	1 cut(s)	842
SetI	ASST	7 cut(s)	36, 138, 202, 266, 335, 420, 754
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	7 cut(s)	236, 269, 357, 517, 562, 624, 844
SsiI	CCGC	4 cut(s)	97, 142, 154, 461
SspMI	CTAG	2 cut(s)	378, 786
StyD4I	CCNGG	2 cut(s)	598, 765
StyI	CCWWGG	1 cut(s)	546
TaiI	ACGT	2 cut(s)	36, 335
TaqI	TCGA	5 cut(s)	18, 132, 302, 384, 407
TasI	AATT	7 cut(s)	236, 269, 357, 517, 562, 624, 844
TatI	WGTACW	2 cut(s)	552, 676
TfiI	GAWTC	5 cut(s)	5, 477, 608, 660, 762
TseFI	GTSAC	4 cut(s)	34, 189, 209, 788
TseI	GCWGC	4 cut(s)	491, 494, 721, 749
Tsp45I	GTSAC	4 cut(s)	34, 189, 209, 788
TspGWI	ACGGA	1 cut(s)	638
Tth111I	GACNNNGTC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	668
XceI	RCATGY	1 cut(s)	798
XcmI	CCANNNNNNNNNTGG	2 cut(s)	227, 575
XmiI	GTMKAC	1 cut(s)	772
XspI	CTAG	2 cut(s)	378, 786
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.