Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007760

Physical Location & Seq

Genomic Coordinates Reverse (-)

17516683 .. 17520293

Gene Structure 3611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGATTCCGGTCAGCCTTTCGAGAGAGAAAAGCACGTGACTTACTTGCAGATGATGTACCAGATCCTCCCCCACCAGTACCAGACTCAAGAGATCAACCGCCTCACTCTCGCCTACTTCGTCGTCTCCGGCCTCGACCTCCTCCGCTCTCTCGACTGCATTGATAAGAATGCGGTAGCTGATTGGGTTCTGTCGCTGCAAGCTCGCCCTAGAGATTGTGACGAAGTTAACAATGGGCAATTCTATGGGTTTTGTGGTTCTAGAAGCTCTCAGTTTAATCCAGATGATAATAATGTGACTTTGAATTCGAGTATCTGTAACTTGGCTAGCACGTATTCTGCCTTGGCTATACTGAAAATTATCGGCTACGACTTGTCTAATATCAAGTCTGAGTGGTTATTGAAGTCAATGAGAAACCTTCAACAACCTGATGGGAGTTTTATGCCTATACATACAGGGGCGGAGACTGATCTTCGATTCATTTATTGTGCTGCTGCGATTTGTCATATGTTGGGAAATTGGAGTGGCATGGACAAAGAGAAAGCCAAGGAGTACATCATAAATTGCCAGTCATATGATGGTGGATTTGGCTTGACTCCTGGTGCAGAATCCCATGGTGGTGCAATTTATTGTGGTATTACATCTCTCCGGTTGATGGGGTTCCTTGAAGAGGATTTACTTTCCAAAAATATATCGTCCTCCATAATAAATGTGCCTATGCTGTTGGTTTGGTGTTTACAGAGGCAAGCAGCTGATGGTGGATTCCAGGGTAGACCCAACAAGCCTAGTGACACATGTTATGCATTTTGGATTGCATCAATTTTGAAGATTTTAGGGGGGCACAAATTGATTGACCAGAAAGCTTTGCGTGGATTCTTAATAACTTTATGGTGGTTTCAGCAAATTTCCAGGGGAACTGCCAGATCTGTATCACTCGTACTATGGGTTTACAGCATTCAGCCTTCTCGAAGAACCTGGCCTCAGTTCACTCTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

333

Amino Acids

37.42

Weight (kDa)

6.97

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	7 - 332	1.8e-99	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39550
fragaria_vesca	FvH4_7g22110 FvH4_7g22110 FvH4_7g22110
malus_domestica	MD01G1126400.v1.1 MD07G1196300.v1.1
prunus_persica	Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1
pyrus_communis	pycom01g15210 pycom07g18440
rosa_chinensis	RchiOBHm_Chr1g0366501
rosa_laevigata	RLG00000027342
rosa_multiflora	Rmu_ssc0000250.1_g000021
rosa_roxburghii	Rroxscaffold_4G00289870 Rroxscaffold_4G00290130
rosa_rugosa	Rorug01G0330500 Rorug01G0330500
rosa_samantha	Rh1AG338400 Rh1BG299900 Rh1CG315000 Rh1DG331700
rosa_wichuraiana	Rw1G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	772
AciI	CCGC	4 cut(s)	100, 145, 173, 461
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	304, 903
AcvI	CACGTG	1 cut(s)	37
AdeI	CACNNNGTG	1 cut(s)	993
AfaI	GTAC	4 cut(s)	59, 80, 554, 939
AfiI	CCNNNNNNNGG	2 cut(s)	655, 670
AflIII	ACRYGT	1 cut(s)	794
AgsI	TTSAA	5 cut(s)	304, 403, 422, 668, 826
AjnI	CCWGG	4 cut(s)	598, 765, 908, 974
AluBI	AGCT	5 cut(s)	179, 203, 267, 752, 863
AluI	AGCT	5 cut(s)	179, 203, 267, 752, 863
Alw26I	GTCTC	2 cut(s)	130, 458
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	2 cut(s)	130, 977
ApeKI	GCWGC	4 cut(s)	196, 491, 494, 749
ApoI	RAATTY	2 cut(s)	304, 903
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
AsuNHI	GCTAGC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	843
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
BbrPI	CACGTG	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	183, 478, 481, 761
BccI	CCATC	4 cut(s)	425, 572, 649, 749
BciT130I	CCWGG	4 cut(s)	600, 767, 910, 976
BcoDI	GTCTC	2 cut(s)	130, 458
BfaI	CTAG	4 cut(s)	210, 261, 327, 786
BglII	AGATCT	1 cut(s)	923
BisI	GCNGC	4 cut(s)	197, 492, 495, 750
BlsI	GCNGC	4 cut(s)	198, 493, 496, 751
Bme1390I	CCNGG	4 cut(s)	600, 767, 910, 976
BmiI	GGNNCC	1 cut(s)	662
BmrFI	CCNGG	4 cut(s)	600, 767, 910, 976
BmsI	GCATC	1 cut(s)	824
BmtI	GCTAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	72
BsaAI	YACGTR	2 cut(s)	37, 333
BsaBI	GATNNNNATC	1 cut(s)	928
BsaJI	CCNNGG	5 cut(s)	342, 546, 613, 766, 909
BsaWI	WCCGGW	2 cut(s)	8, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	655, 670
Bse1I	ACTGG	2 cut(s)	76, 568
Bse8I	GATNNNNATC	1 cut(s)	928
BseBI	CCWGG	4 cut(s)	600, 767, 910, 976
BseDI	CCNNGG	5 cut(s)	342, 546, 613, 766, 909
BseJI	GATNNNNATC	1 cut(s)	928
BseLI	CCNNNNNNNGG	2 cut(s)	655, 670
BseMII	CTCAG	3 cut(s)	284, 381, 995
BseNI	ACTGG	2 cut(s)	76, 568
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	4 cut(s)	183, 478, 481, 761
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	132, 979
BsiSI	CCGG	3 cut(s)	9, 129, 649
BslI	CCNNNNNNNGG	2 cut(s)	655, 670
BsmAI	GTCTC	2 cut(s)	130, 458
BsmBI	CGTCTC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	175, 954
BsnI	GGCC	2 cut(s)	132, 979
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	4 cut(s)	63, 93, 469, 923
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	4 cut(s)	100, 145, 173, 461
BspANI	GGCC	2 cut(s)	132, 979
BspCNI	CTCAG	3 cut(s)	283, 382, 994
BspLI	GGNNCC	1 cut(s)	662
BspOI	GCTAGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	58
BsrBI	CCGCTC	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	76, 568
BssECI	CCNNGG	5 cut(s)	342, 546, 613, 766, 909
BssMI	GATC	4 cut(s)	63, 93, 469, 923
BssT1I	CCWWGG	3 cut(s)	342, 546, 613
Bst2UI	CCWGG	4 cut(s)	600, 767, 910, 976
Bst6I	CTCTTC	1 cut(s)	663
BstBAI	YACGTR	2 cut(s)	37, 333
BstC8I	GCNNGC	4 cut(s)	201, 205, 328, 747
BstDEI	CTNAG	3 cut(s)	270, 390, 981
BstDSI	CCRYGG	1 cut(s)	613
BstENI	CCTNNNNNAGG	1 cut(s)	668
BstKTI	GATC	4 cut(s)	66, 96, 472, 926
BstMAI	GTCTC	2 cut(s)	130, 458
BstMBI	GATC	4 cut(s)	63, 93, 469, 923
BstNI	CCWGG	4 cut(s)	600, 767, 910, 976
BstNSI	RCATGY	1 cut(s)	798
BstSCI	CCNGG	4 cut(s)	598, 765, 908, 974
BstSLI	GKGCMC	1 cut(s)	843
BstV1I	GCAGC	4 cut(s)	183, 478, 481, 761
BstX2I	RGATCY	2 cut(s)	63, 923
BstYI	RGATCY	2 cut(s)	63, 923
BsuRI	GGCC	2 cut(s)	132, 979
BtgI	CCRYGG	1 cut(s)	613
Cac8I	GCNNGC	4 cut(s)	201, 205, 328, 747
Csp6I	GTAC	4 cut(s)	58, 79, 553, 938
CviAII	CATG	3 cut(s)	529, 614, 795
CviQI	GTAC	4 cut(s)	58, 79, 553, 938
DdeI	CTNAG	3 cut(s)	270, 390, 981
DpnI	GATC	4 cut(s)	65, 95, 471, 925
DpnII	GATC	4 cut(s)	63, 93, 469, 923
DraIII	CACNNNGTG	1 cut(s)	993
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	476
Eco130I	CCWWGG	3 cut(s)	342, 546, 613
Eco72I	CACGTG	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	4 cut(s)	598, 765, 908, 974
EcoT14I	CCWWGG	3 cut(s)	342, 546, 613
EcoT22I	ATGCAT	1 cut(s)	805
ErhI	CCWWGG	3 cut(s)	342, 546, 613
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	3 cut(s)	532, 617, 798
FatI	CATG	3 cut(s)	528, 613, 794
FauNDI	CATATG	2 cut(s)	507, 574
FblI	GTMKAC	1 cut(s)	772
Fnu4HI	GCNGC	4 cut(s)	197, 492, 495, 750
Fsp4HI	GCNGC	4 cut(s)	197, 492, 495, 750
FspBI	CTAG	4 cut(s)	210, 261, 327, 786
GluI	GCNGC	4 cut(s)	197, 492, 495, 750
HaeIII	GGCC	2 cut(s)	132, 979
HapII	CCGG	3 cut(s)	9, 129, 649
Hin1II	CATG	3 cut(s)	532, 617, 798
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	7 cut(s)	5, 85, 477, 595, 608, 762, 873
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	9, 129, 649
Hpy166II	GTNNAC	5 cut(s)	229, 737, 773, 949, 987
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	6 cut(s)	22, 89, 152, 261, 281, 966
Hpy8I	GTNNAC	5 cut(s)	229, 737, 773, 949, 987
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	428, 972
HpyCH4IV	ACGT	2 cut(s)	36, 332
HpyCH4V	TGCA	7 cut(s)	49, 159, 199, 605, 623, 803, 815
HpyF3I	CTNAG	3 cut(s)	270, 390, 981
HpySE526I	ACGT	2 cut(s)	36, 332
Hsp92II	CATG	3 cut(s)	532, 617, 798
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	63, 93, 469, 923
Lsp1109I	GCAGC	4 cut(s)	183, 478, 481, 761
LweI	GCATC	1 cut(s)	824
MaeI	CTAG	4 cut(s)	210, 261, 327, 786
MaeII	ACGT	2 cut(s)	36, 332
MaeIII	GTNAC	5 cut(s)	37, 218, 295, 317, 788
MalI	GATC	4 cut(s)	65, 95, 471, 925
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	4 cut(s)	63, 93, 469, 923
MboII	GAAGA	4 cut(s)	464, 680, 838, 981
MflI	RGATCY	2 cut(s)	63, 923
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	9 cut(s)	239, 304, 357, 517, 562, 624, 819, 845, 903
MlyI	GAGTC	2 cut(s)	79, 589
MnlI	CCTC	9 cut(s)	77, 113, 143, 149, 152, 664, 709, 735, 990
Mph1103I	ATGCAT	1 cut(s)	805
MseI	TTAA	3 cut(s)	228, 276, 878
MslI	CAYNNNNRTG	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	3 cut(s)	9, 129, 649
MspR9I	CCNGG	4 cut(s)	600, 767, 910, 976
Mva1269I	GAATGC	2 cut(s)	175, 954
MvaI	CCWGG	4 cut(s)	600, 767, 910, 976
NcoI	CCATGG	1 cut(s)	613
NdeI	CATATG	2 cut(s)	507, 574
NdeII	GATC	4 cut(s)	63, 93, 469, 923
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	3 cut(s)	532, 617, 798
NlaIV	GGNNCC	1 cut(s)	662
NmuCI	GTSAC	4 cut(s)	37, 218, 295, 788
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	798
PciI	ACATGT	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	2 cut(s)	175, 954
PfeI	GAWTC	5 cut(s)	5, 477, 608, 762, 873
PkrI	GCNGC	4 cut(s)	198, 493, 496, 751
PleI	GAGTC	2 cut(s)	79, 589
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	2 cut(s)	79, 589
Ppu21I	YACGTR	2 cut(s)	37, 333
PscI	ACATGT	1 cut(s)	794
Psp6I	CCWGG	4 cut(s)	598, 765, 908, 974
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	4 cut(s)	598, 765, 908, 974
PspN4I	GGNNCC	1 cut(s)	662
PsuI	RGATCY	2 cut(s)	63, 923
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	4 cut(s)	59, 80, 554, 939
RsaNI	GTAC	4 cut(s)	58, 79, 553, 938
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	228, 276, 878
SatI	GCNGC	4 cut(s)	197, 492, 495, 750
Sau3AI	GATC	4 cut(s)	63, 93, 469, 923
SchI	GAGTC	2 cut(s)	79, 589
ScrFI	CCNGG	4 cut(s)	600, 767, 910, 976
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	9 cut(s)	239, 304, 357, 517, 562, 624, 819, 845, 903
SsiI	CCGC	4 cut(s)	100, 145, 173, 461
SspMI	CTAG	4 cut(s)	210, 261, 327, 786
StyD4I	CCNGG	4 cut(s)	598, 765, 908, 974
StyI	CCWWGG	3 cut(s)	342, 546, 613
TaiI	ACGT	2 cut(s)	39, 335
TaqI	TCGA	6 cut(s)	21, 135, 153, 308, 475, 967
TasI	AATT	9 cut(s)	239, 304, 357, 517, 562, 624, 819, 845, 903
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	5 cut(s)	5, 477, 608, 762, 873
Tru1I	TTAA	3 cut(s)	228, 276, 878
Tru9I	TTAA	3 cut(s)	228, 276, 878
TseFI	GTSAC	4 cut(s)	37, 218, 295, 788
TseI	GCWGC	4 cut(s)	196, 491, 494, 749
Tsp45I	GTSAC	4 cut(s)	37, 218, 295, 788
TspDTI	ATGAA	1 cut(s)	469
XagI	CCTNNNNNAGG	1 cut(s)	668
XapI	RAATTY	2 cut(s)	304, 903
XbaI	TCTAGA	1 cut(s)	260
XceI	RCATGY	1 cut(s)	798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XmiI	GTMKAC	1 cut(s)	772
XspI	CTAG	4 cut(s)	210, 261, 327, 786
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.