Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007760

Physical Location & Seq

Genomic Coordinates Reverse (-)

15146264 .. 15148222

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15210.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCAATGAGAAATCTTCAACAGCCTGATGGAAGTTTTATGCCTATACATACAGGGGCCGAGACTGATCTTAGATTCATCTATTGTGCTGCGGCTATTTGTCATATGTTGGGAAATTGGAGTGGCATGGACAAGGAGAAAGCCAAGGAGTACATATTAAATTGCCAGTCATACGACGGAGGTTTTGGGTTGACTCCTGGTTCAGAATCTCATGGCGGTGCAACATATTGTGGTGTTATATCTCTCCGGTTAATGGGATTCATTGAAGATGATATTCTCTCTAAAGATGCAGAGTCTTCCATAATAAATGTGCCATTGCTGCTGGATTGGTGCTTGCAGCGGCAGGCAGCTGATGGTGGATTTCAGGGTAGACCCAACAAGCATAGTGATACATGTTACGCGTTCTGGATTGCATCAGTTTTGAAGGTTTTAGGGGGCCACAAATTCATTGACAAGAAAGCCTTACATGGTTTTTTGCTGACTTGTCAGTCCGAGTACGGTGGTTTCAGCAAGTTTCCGGGGGATTATCCAGATCGATCTATCACTCCTACTACGGGTTCACCGCATTCAGCCTCTTGGAAGAACCCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

198

Amino Acids

21.55

Weight (kDa)

6.14

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39550
fragaria_vesca	FvH4_7g22110 FvH4_7g22110 FvH4_7g22110
malus_domestica	MD01G1126400.v1.1 MD07G1196300.v1.1
prunus_persica	Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1
pyrus_communis	pycom01g15210 pycom07g18440
rosa_chinensis	RchiOBHm_Chr1g0366501
rosa_laevigata	RLG00000027342
rosa_multiflora	Rmu_ssc0000250.1_g000021
rosa_roxburghii	Rroxscaffold_4G00289870 Rroxscaffold_4G00290130
rosa_rugosa	Rorug01G0330500 Rorug01G0330500
rosa_samantha	Rh1AG338400 Rh1BG299900 Rh1CG315000 Rh1DG331700
rosa_wichuraiana	Rw1G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	1 cut(s)	401
AciI	CCGC	4 cut(s)	92, 216, 340, 563
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	2 cut(s)	152, 497
AfiI	CCNNNNNNNGG	2 cut(s)	253, 554
AflIII	ACRYGT	2 cut(s)	392, 399
AgsI	TTSAA	3 cut(s)	20, 266, 424
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	3 cut(s)	57, 436, 588
ApeKI	GCWGC	4 cut(s)	89, 319, 337, 347
ApoI	RAATTY	1 cut(s)	443
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspS9I	GGNCC	2 cut(s)	57, 436
AsuC2I	CCSGG	2 cut(s)	519, 587
AsuHPI	GGTGA	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	76, 306, 349, 359
BccI	CCATC	2 cut(s)	23, 347
BciT130I	CCWGG	1 cut(s)	198
BcnI	CCSGG	2 cut(s)	519, 587
BcoDI	GTCTC	1 cut(s)	56
BisI	GCNGC	6 cut(s)	90, 93, 320, 338, 341, 348
BlsI	GCNGC	6 cut(s)	91, 94, 321, 339, 342, 349
Bme1390I	CCNGG	3 cut(s)	198, 519, 587
BmgT120I	GGNCC	2 cut(s)	57, 436
BmiI	GGNNCC	2 cut(s)	58, 437
BmrFI	CCNGG	3 cut(s)	198, 519, 587
BmsI	GCATC	2 cut(s)	277, 422
BpiI	GAAGAC	1 cut(s)	288
BpuMI	CCSGG	2 cut(s)	519, 587
Bsa29I	ATCGAT	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	144, 518
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 554
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	144, 518
BseLI	CCNNNNNNNGG	2 cut(s)	253, 554
BseMI	GCAATG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	4 cut(s)	76, 306, 349, 359
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	3 cut(s)	59, 438, 590
BshVI	ATCGAT	1 cut(s)	535
BsiSI	CCGG	3 cut(s)	247, 518, 587
BslI	CCNNNNNNNGG	2 cut(s)	253, 554
BsmAI	GTCTC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	59, 438, 590
Bsp143I	GATC	3 cut(s)	67, 532, 536
BspACI	CCGC	4 cut(s)	92, 216, 340, 563
BspANI	GGCC	3 cut(s)	59, 438, 590
BspDI	ATCGAT	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	2 cut(s)	58, 437
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	144, 518
BssMI	GATC	3 cut(s)	67, 532, 536
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	335, 345
BstDEI	CTNAG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	3 cut(s)	70, 535, 539
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	3 cut(s)	67, 532, 536
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	3 cut(s)	196, 517, 585
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	4 cut(s)	76, 306, 349, 359
BstV2I	GAAGAC	1 cut(s)	288
Bsu15I	ATCGAT	1 cut(s)	535
BsuRI	GGCC	3 cut(s)	59, 438, 590
BsuTUI	ATCGAT	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	335, 345
Cfr13I	GGNCC	2 cut(s)	57, 436
ClaI	ATCGAT	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	151, 496
CviAII	CATG	4 cut(s)	127, 212, 393, 467
CviJI	RGCY	9 cut(s)	25, 59, 95, 143, 350, 438, 461, 572, 590
CviKI_1	RGCY	9 cut(s)	25, 59, 95, 143, 350, 438, 461, 572, 590
CviQI	GTAC	2 cut(s)	151, 496
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	69, 534, 538
DpnII	GATC	3 cut(s)	67, 532, 536
DrdI	GACNNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	130, 215, 396, 470
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	4 cut(s)	126, 211, 392, 466
FauNDI	CATATG	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	6 cut(s)	90, 93, 320, 338, 341, 348
Fsp4HI	GCNGC	6 cut(s)	90, 93, 320, 338, 341, 348
GluI	GCNGC	6 cut(s)	90, 93, 320, 338, 341, 348
HaeIII	GGCC	3 cut(s)	59, 438, 590
HapII	CCGG	3 cut(s)	247, 518, 587
Hin1II	CATG	4 cut(s)	130, 215, 396, 470
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	5 cut(s)	75, 193, 206, 258, 293
HpaII	CCGG	3 cut(s)	247, 518, 587
HphI	GGTGA	1 cut(s)	552
Hpy166II	GTNNAC	3 cut(s)	192, 371, 560
Hpy188I	TCNGA	2 cut(s)	205, 493
Hpy188III	TCNNGA	2 cut(s)	406, 530
Hpy8I	GTNNAC	3 cut(s)	192, 371, 560
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4V	TGCA	4 cut(s)	221, 290, 337, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	130, 215, 396, 470
Kzo9I	GATC	3 cut(s)	67, 532, 536
Lsp1109I	GCAGC	4 cut(s)	76, 306, 349, 359
LweI	GCATC	2 cut(s)	277, 422
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	3 cut(s)	69, 534, 538
MboI	GATC	3 cut(s)	67, 532, 536
MboII	GAAGA	4 cut(s)	8, 278, 288, 592
MluCI	AATT	3 cut(s)	115, 160, 443
MluI	ACGCGT	1 cut(s)	399
MlyI	GAGTC	2 cut(s)	187, 302
MnlI	CCTC	2 cut(s)	173, 583
MseI	TTAA	2 cut(s)	158, 251
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	2 cut(s)	340, 350
MspI	CCGG	3 cut(s)	247, 518, 587
MspR9I	CCNGG	3 cut(s)	198, 519, 587
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	319
NciI	CCSGG	2 cut(s)	519, 587
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	3 cut(s)	67, 532, 536
NlaIII	CATG	4 cut(s)	130, 215, 396, 470
NlaIV	GGNNCC	2 cut(s)	58, 437
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	396
PciI	ACATGT	1 cut(s)	392
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	75, 206, 258
PkrI	GCNGC	6 cut(s)	91, 94, 321, 339, 342, 349
PleI	GAGTC	2 cut(s)	187, 301
PpsI	GAGTC	2 cut(s)	187, 301
PscI	ACATGT	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	58, 437
PspPI	GGNCC	2 cut(s)	57, 436
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	152, 497
RsaNI	GTAC	2 cut(s)	151, 496
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	158, 251
SatI	GCNGC	6 cut(s)	90, 93, 320, 338, 341, 348
Sau3AI	GATC	3 cut(s)	67, 532, 536
Sau96I	GGNCC	2 cut(s)	57, 436
SchI	GAGTC	2 cut(s)	187, 302
ScrFI	CCNGG	3 cut(s)	198, 519, 587
SetI	ASST	3 cut(s)	184, 352, 429
SfaNI	GCATC	2 cut(s)	277, 422
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	115, 160, 443
SsiI	CCGC	4 cut(s)	92, 216, 340, 563
StyD4I	CCNGG	3 cut(s)	196, 517, 585
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	500
TaqI	TCGA	1 cut(s)	535
TasI	AATT	3 cut(s)	115, 160, 443
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	2 cut(s)	95, 343
TfiI	GAWTC	3 cut(s)	75, 206, 258
Tru1I	TTAA	2 cut(s)	158, 251
Tru9I	TTAA	2 cut(s)	158, 251
TseI	GCWGC	4 cut(s)	89, 319, 337, 347
TspDTI	ATGAA	3 cut(s)	67, 250, 436
TspGWI	ACGGA	1 cut(s)	192
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.