Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007760

Physical Location & Seq

Genomic Coordinates Reverse (-)

27471284 .. 27474476

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1196300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTTCGGAGATTTTCGAGCGTGACCGGCACGTGACGTTTCTTCAGATGGAGTACCAGCTGCTGCCGTCCCCCTACCAGTCCCAGGAAATCAACAGCCTCACTCTAGCTTACTTTGTCATCTCCGGCCTCGACCTCCTCGCCGCCCCCGATCGCCTCGTTGACAAGGAAGCAGTTGCCAAGTGGGTTCTGTCGTTGCAAGCTCACCCGAGAAGCCAGTCCGAATTGGACAACGGACAATTCTATGGATTTTATGGTTCCAGATCTGCACAATTTCCTTCAGAGGATAAAGACAATGGGGCTTTATTAAGTTGCAGTGTCAGTAACTTGGCCAGCACGTATTGTGCTGTGGCGATACTTAAAATCATCGGCTATGACTTGTCCAGTATTGATTCTGAGTCGATACTAACGTCAATGAGAAACCTTCAACAGCCTGATGGGAGTTTTATGCCTATACATACAGGGGCCGAGACTGATCTCCGATTCATTTATTGTGCTGTGGCCATTTGTCATATGATGGGAAATTGGAGTGGCATGGACAAGGAGAAAGCCAAGGCGTACATAATAAATTGCCAGTCATACGATGGAGGCTTTGGGTTGACTCCAGGTTCAGAATCTCATGGCGGTGCAACATATTGTGGTGTTACATCTCTCCGGTTAATGGGATTCATTGAAGAAGATATTCTTTCTAAAGATGCAGAGTCTTCCATAATAAATGTGCCATTGCTGCTGGATTGGTGCTTGCAGAGACAGGCAGCTGATGGTGGATTTCAGGGTAGACCCAACAAGCCTAGTGATACATGTTATGCCTTTTGGATTGGATCAGTTTTGAAGGTTTTAGGGGGCCACAAATTCATTGACAAGAAGGCTCTACATGGATTTTTGCTAACTTGTCAATCCGAGTACGGTGGTTTCAGCAAGTTCCCGGGGGACTTTCCAGATCTATATCACTCCTATTACGGGTTTACCGCATTCAGCCTCTTGGAAGAACCCGGCCTGAAACCACTCTGTGTTGAGCTGGGAATGTCTGCTATTGCTGCCATTGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

351

Amino Acids

38.39

Weight (kDa)

4.95

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	6 - 337	2.8e-99	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39550
fragaria_vesca	FvH4_7g22110 FvH4_7g22110 FvH4_7g22110
malus_domestica	MD01G1126400.v1.1 MD07G1196300.v1.1
prunus_persica	Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1
pyrus_communis	pycom01g15210 pycom07g18440
rosa_chinensis	RchiOBHm_Chr1g0366501
rosa_laevigata	RLG00000027342
rosa_multiflora	Rmu_ssc0000250.1_g000021
rosa_roxburghii	Rroxscaffold_4G00289870 Rroxscaffold_4G00290130
rosa_rugosa	Rorug01G0330500 Rorug01G0330500
rosa_samantha	Rh1AG338400 Rh1BG299900 Rh1CG315000 Rh1DG331700
rosa_wichuraiana	Rw1G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	778
AciI	CCGC	3 cut(s)	144, 624, 969
AclWI	GGATC	1 cut(s)	829
AcoI	YGGCCR	2 cut(s)	330, 501
AcsI	RAATTY	1 cut(s)	851
AcuI	CTGAAG	2 cut(s)	29, 264
AcvI	CACGTG	1 cut(s)	34
AdeI	CACNNNGTG	1 cut(s)	1010
AfaI	GTAC	3 cut(s)	56, 560, 905
AfiI	CCNNNNNNNGG	3 cut(s)	85, 661, 960
AflIII	ACRYGT	1 cut(s)	800
AgsI	TTSAA	3 cut(s)	428, 674, 832
AjnI	CCWGG	2 cut(s)	84, 604
AluBI	AGCT	5 cut(s)	61, 110, 203, 758, 1018
AluI	AGCT	5 cut(s)	61, 110, 203, 758, 1018
Alw26I	GTCTC	2 cut(s)	464, 742
AlwI	GGATC	1 cut(s)	829
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	2 cut(s)	208, 925
AoxI	GGCC	6 cut(s)	127, 330, 465, 501, 844, 994
ApeKI	GCWGC	5 cut(s)	61, 64, 727, 755, 1037
ApoI	RAATTY	1 cut(s)	851
Asp700I	GAANNNNTTC	1 cut(s)	681
AspS9I	GGNCC	2 cut(s)	465, 844
AsuC2I	CCSGG	3 cut(s)	926, 927, 993
AsuHPI	GGTGA	1 cut(s)	197
AvaI	CYCGRG	2 cut(s)	208, 925
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BalI	TGGCCA	2 cut(s)	332, 503
BbrPI	CACGTG	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	696
BbvI	GCAGC	5 cut(s)	48, 51, 714, 767, 1024
BccI	CCATC	5 cut(s)	43, 431, 511, 578, 755
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	86, 606
BcnI	CCSGG	3 cut(s)	926, 927, 993
BcoDI	GTCTC	2 cut(s)	464, 742
BfaI	CTAG	2 cut(s)	107, 792
BglII	AGATCT	2 cut(s)	263, 940
BisI	GCNGC	6 cut(s)	62, 65, 144, 728, 756, 1038
BlsI	GCNGC	6 cut(s)	63, 66, 145, 729, 757, 1039
Bme1390I	CCNGG	5 cut(s)	86, 606, 926, 927, 993
BmeT110I	CYCGRG	2 cut(s)	208, 925
BmgT120I	GGNCC	2 cut(s)	465, 844
BmiI	GGNNCC	3 cut(s)	259, 466, 845
BmrFI	CCNGG	5 cut(s)	86, 606, 926, 927, 993
BmsI	GCATC	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	696
BpmI	CTGGAG	1 cut(s)	588
BpuMI	CCSGG	3 cut(s)	926, 927, 993
BsaAI	YACGTR	2 cut(s)	34, 339
BsaBI	GATNNNNATC	1 cut(s)	945
BsaJI	CCNNGG	4 cut(s)	84, 552, 925, 926
BsaWI	WCCGGW	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 661, 960
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	4 cut(s)	79, 217, 384, 574
Bse3DI	GCAATG	1 cut(s)	722
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	2 cut(s)	86, 606
BseDI	CCNNGG	4 cut(s)	84, 552, 925, 926
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	3 cut(s)	85, 661, 960
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	4 cut(s)	79, 217, 384, 574
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	5 cut(s)	48, 51, 714, 767, 1024
BseYI	CCCAGC	1 cut(s)	1018
BsgI	GTGCAG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	6 cut(s)	129, 332, 467, 503, 846, 996
BsiEI	CGRYCG	1 cut(s)	154
BsiHKCI	CYCGRG	2 cut(s)	208, 925
BsiSI	CCGG	5 cut(s)	28, 126, 655, 926, 993
BslFI	GGGAC	3 cut(s)	55, 67, 944
BslI	CCNNNNNNNGG	3 cut(s)	85, 661, 960
BsmAI	GTCTC	2 cut(s)	464, 742
BsmFI	GGGAC	3 cut(s)	55, 67, 944
BsmI	GAATGC	1 cut(s)	971
BsnI	GGCC	6 cut(s)	129, 332, 467, 503, 846, 996
BsoBI	CYCGRG	2 cut(s)	208, 925
Bsp143I	GATC	5 cut(s)	151, 263, 475, 821, 940
BspACI	CCGC	3 cut(s)	144, 624, 969
BspANI	GGCC	6 cut(s)	129, 332, 467, 503, 846, 996
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	259, 466, 845
BspPI	GGATC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	4 cut(s)	79, 217, 384, 574
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	4 cut(s)	84, 552, 925, 926
BssMI	GATC	5 cut(s)	151, 263, 475, 821, 940
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	86, 606
Bst4CI	ACNGT	1 cut(s)	908
BstBAI	YACGTR	2 cut(s)	34, 339
BstC8I	GCNNGC	3 cut(s)	201, 334, 743
BstDEI	CTNAG	1 cut(s)	396
BstKTI	GATC	5 cut(s)	154, 266, 478, 824, 943
BstMAI	GTCTC	2 cut(s)	464, 742
BstMBI	GATC	5 cut(s)	151, 263, 475, 821, 940
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 727, 1037
BstNI	CCWGG	2 cut(s)	86, 606
BstNSI	RCATGY	1 cut(s)	804
BstSCI	CCNGG	5 cut(s)	84, 604, 924, 925, 991
BstV1I	GCAGC	5 cut(s)	48, 51, 714, 767, 1024
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	263, 940
BstYI	RGATCY	2 cut(s)	263, 940
BsuRI	GGCC	6 cut(s)	129, 332, 467, 503, 846, 996
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	3 cut(s)	201, 334, 743
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	465, 844
Cfr9I	CCCGGG	1 cut(s)	925
Csp6I	GTAC	3 cut(s)	55, 559, 904
CviAII	CATG	4 cut(s)	535, 620, 801, 875
CviQI	GTAC	3 cut(s)	55, 559, 904
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	5 cut(s)	153, 265, 477, 823, 942
DpnII	GATC	5 cut(s)	151, 263, 475, 821, 940
DraIII	CACNNNGTG	1 cut(s)	1010
EaeI	YGGCCR	2 cut(s)	330, 501
Eco130I	CCWWGG	1 cut(s)	552
Eco57I	CTGAAG	2 cut(s)	29, 264
Eco72I	CACGTG	1 cut(s)	34
Eco88I	CYCGRG	2 cut(s)	208, 925
EcoRII	CCWGG	2 cut(s)	84, 604
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	538, 623, 804, 878
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	3 cut(s)	55, 67, 944
FatI	CATG	4 cut(s)	534, 619, 800, 874
FauNDI	CATATG	1 cut(s)	513
FblI	GTMKAC	1 cut(s)	778
Fnu4HI	GCNGC	6 cut(s)	62, 65, 144, 728, 756, 1038
Fsp4HI	GCNGC	6 cut(s)	62, 65, 144, 728, 756, 1038
FspBI	CTAG	2 cut(s)	107, 792
GluI	GCNGC	6 cut(s)	62, 65, 144, 728, 756, 1038
GsaI	CCCAGC	1 cut(s)	1022
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	6 cut(s)	129, 332, 467, 503, 846, 996
HapII	CCGG	5 cut(s)	28, 126, 655, 926, 993
Hin1II	CATG	4 cut(s)	538, 623, 804, 878
HincII	GTYRAC	2 cut(s)	163, 600
HindII	GTYRAC	2 cut(s)	163, 600
HinfI	GANTC	8 cut(s)	392, 398, 483, 601, 614, 666, 701, 1047
HpaII	CCGG	5 cut(s)	28, 126, 655, 926, 993
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	4 cut(s)	163, 600, 779, 966
Hpy188I	TCNGA	9 cut(s)	10, 48, 223, 283, 397, 482, 613, 901, 1052
Hpy188III	TCNNGA	2 cut(s)	261, 938
Hpy8I	GTNNAC	4 cut(s)	163, 600, 779, 966
HpyAV	CCTTC	4 cut(s)	288, 434, 826, 859
HpyCH4III	ACNGT	1 cut(s)	908
HpyCH4IV	ACGT	4 cut(s)	33, 38, 338, 410
HpyCH4V	TGCA	6 cut(s)	199, 269, 315, 629, 698, 745
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 727, 1037
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	4 cut(s)	33, 38, 338, 410
Hsp92II	CATG	4 cut(s)	538, 623, 804, 878
Kzo9I	GATC	5 cut(s)	151, 263, 475, 821, 940
Lsp1109I	GCAGC	5 cut(s)	48, 51, 714, 767, 1024
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	2 cut(s)	107, 792
MaeII	ACGT	4 cut(s)	33, 38, 338, 410
MaeIII	GTNAC	4 cut(s)	23, 34, 323, 643
MalI	GATC	5 cut(s)	153, 265, 477, 823, 942
MboI	GATC	5 cut(s)	151, 263, 475, 821, 940
MboII	GAAGA	5 cut(s)	35, 686, 689, 696, 998
MflI	RGATCY	2 cut(s)	263, 940
MlsI	TGGCCA	2 cut(s)	332, 503
MluCI	AATT	6 cut(s)	224, 239, 272, 523, 568, 851
MluNI	TGGCCA	2 cut(s)	332, 503
MlyI	GAGTC	3 cut(s)	407, 595, 710
MnlI	CCTC	8 cut(s)	110, 140, 146, 149, 167, 277, 581, 989
Mox20I	TGGCCA	2 cut(s)	332, 503
MroXI	GAANNNNTTC	1 cut(s)	681
MscI	TGGCCA	2 cut(s)	332, 503
MseI	TTAA	3 cut(s)	308, 360, 659
MslI	CAYNNNNRTG	1 cut(s)	624
Msp20I	TGGCCA	2 cut(s)	332, 503
MspA1I	CMGCKG	2 cut(s)	61, 758
MspI	CCGG	5 cut(s)	28, 126, 655, 926, 993
MspR9I	CCNGG	5 cut(s)	86, 606, 926, 927, 993
Mva1269I	GAATGC	1 cut(s)	971
MvaI	CCWGG	2 cut(s)	86, 606
MwoI	GCNNNNNNNGC	3 cut(s)	28, 727, 1037
NciI	CCSGG	3 cut(s)	926, 927, 993
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	5 cut(s)	151, 263, 475, 821, 940
NlaIII	CATG	4 cut(s)	538, 623, 804, 878
NlaIV	GGNNCC	3 cut(s)	259, 466, 845
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	23, 34
NspI	RCATGY	1 cut(s)	804
PciI	ACATGT	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 407
PctI	GAATGC	1 cut(s)	971
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	5 cut(s)	392, 483, 614, 666, 1047
PkrI	GCNGC	6 cut(s)	63, 66, 145, 729, 757, 1039
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	3 cut(s)	406, 595, 709
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
PpsI	GAGTC	3 cut(s)	406, 595, 709
Ppu21I	YACGTR	2 cut(s)	34, 339
PscI	ACATGT	1 cut(s)	800
Psp6I	CCWGG	2 cut(s)	84, 604
PspCI	CACGTG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	1018
PspGI	CCWGG	2 cut(s)	84, 604
PspN4I	GGNNCC	3 cut(s)	259, 466, 845
PspPI	GGNCC	2 cut(s)	465, 844
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	263, 940
PvuI	CGATCG	1 cut(s)	154
PvuII	CAGCTG	2 cut(s)	61, 758
RsaI	GTAC	3 cut(s)	56, 560, 905
RsaNI	GTAC	3 cut(s)	55, 559, 904
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	3 cut(s)	308, 360, 659
SatI	GCNGC	6 cut(s)	62, 65, 144, 728, 756, 1038
Sau3AI	GATC	5 cut(s)	151, 263, 475, 821, 940
Sau96I	GGNCC	2 cut(s)	465, 844
SchI	GAGTC	3 cut(s)	407, 595, 710
ScrFI	CCNGG	5 cut(s)	86, 606, 926, 927, 993
SfaNI	GCATC	1 cut(s)	685
SmaI	CCCGGG	1 cut(s)	927
SmiMI	CAYNNNNRTG	1 cut(s)	624
Sse9I	AATT	6 cut(s)	224, 239, 272, 523, 568, 851
SsiI	CCGC	3 cut(s)	144, 624, 969
SspMI	CTAG	2 cut(s)	107, 792
StyD4I	CCNGG	5 cut(s)	84, 604, 924, 925, 991
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	908
TaiI	ACGT	4 cut(s)	36, 41, 341, 413
TaqI	TCGA	3 cut(s)	18, 132, 401
TasI	AATT	6 cut(s)	224, 239, 272, 523, 568, 851
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	5 cut(s)	392, 483, 614, 666, 1047
Tru1I	TTAA	3 cut(s)	308, 360, 659
Tru9I	TTAA	3 cut(s)	308, 360, 659
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	2 cut(s)	23, 34
TseI	GCWGC	5 cut(s)	61, 64, 727, 755, 1037
Tsp45I	GTSAC	2 cut(s)	23, 34
TspDTI	ATGAA	3 cut(s)	475, 658, 844
TspGWI	ACGGA	1 cut(s)	249
TspMI	CCCGGG	1 cut(s)	925
TspRI	CASTG	1 cut(s)	322
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	1 cut(s)	804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XmaI	CCCGGG	1 cut(s)	925
XmiI	GTMKAC	1 cut(s)	778
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	2 cut(s)	107, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.