Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007760

Physical Location & Seq

Genomic Coordinates Reverse (-)

23813542 .. 23817624

Gene Structure 4083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1126400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTTCGGAGGTATTCGATCGTGACCGGCACTTGACGTTTCTGCAGATGATGTACCAGCTGCTGCCCTCCCCCTACCAGTCCCAAGAAATCAACCGCCTCACTCTCGCCTACTTCGTCATCTCCGGCCTCGACCTCCTCGCCGCCCCCGATCGCCTCGTTGACAAGGAAGCAGTTGCCAATTGGGTTCTGTCACTGCAAGCTCACCCGAGAAGCAAATCCGAATTGAACAATGGACGATTCTATGGTTTTTATGGATCCAGAGCTGCCCAATTTCCTCCAGAGGATAATGACAATGGGGCTTTGAGTTGCAGTGTCAGTAACTTGGCCAGCACGTATTGTGCCGTGGCTATACTTAAAATCATCGGCTATGACTTGTCCAGTATTGACTCCGAGTCGATACTGATGTCAATGAGAAATCTTCAACAGCCTGATGGAAGTTTTATGCCTATACATACAGGGGCCGAGACTGATCTTAGATTCATCTATTGTGCTGCGGCTATTAGTCATATGTTGGGAAATTGGAGTGGCATGGACAAGGAGAAAGCCAAGGAGTACATATTAAATTGCCAGTCATACGACGGAGGTTTTGGGTTGACTCCTGGTTCAGAATCTCATGGCGGTGCAACATATTGTGGTGTTATATCTCTCCAGTTAATGGGACTCATTGAAGATGATATTCTTTCTAAAGATGCCGAGTCTTCCATAATAAATGTGCCATTGCTGCTGGATTGGTGCTTGCAGCGTCAGGCAGCTGATGGTGGATTTCAAGGTAGACCCAACAAGCCTAGTGATACATGTTACGCGTTCTGGATTGCATCAGTTTTGAAGGTTTTAGGGGGCCACAAATTCATTGACAAGAAAGCTTTACATGGTTTTTTGCTGACTTGTCAGTCCGAGTACGGTGGTTTCAGCAAGTTTCCGGGGGATTATCCAGATCTCTATCACTCCTATTACGGGTTCACCGCATTCAGCCTCTTGGAAGAACCCGGCCTGAAACCACTCTGTGTTGAGCTGGGAATGTCTGCCATTGCTGCCATTGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

350

Amino Acids

38.32

Weight (kDa)

5.0

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	6 - 336	1.8e-99	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39550
fragaria_vesca	FvH4_7g22110 FvH4_7g22110 FvH4_7g22110
malus_domestica	MD01G1126400.v1.1 MD07G1196300.v1.1
prunus_persica	Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1
pyrus_communis	pycom01g15210 pycom07g18440
rosa_chinensis	RchiOBHm_Chr1g0366501
rosa_laevigata	RLG00000027342
rosa_multiflora	Rmu_ssc0000250.1_g000021
rosa_roxburghii	Rroxscaffold_4G00289870 Rroxscaffold_4G00290130
rosa_rugosa	Rorug01G0330500 Rorug01G0330500
rosa_samantha	Rh1AG338400 Rh1BG299900 Rh1CG315000 Rh1DG331700
rosa_wichuraiana	Rw1G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	892
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	775
AccII	CGCG	1 cut(s)	806
AciI	CCGC	5 cut(s)	97, 144, 497, 621, 966
AclWI	GGATC	2 cut(s)	252, 265
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	848
AdeI	CACNNNGTG	1 cut(s)	1007
AfaI	GTAC	3 cut(s)	56, 557, 902
AfiI	CCNNNNNNNGG	2 cut(s)	658, 957
AflIII	ACRYGT	2 cut(s)	797, 804
AgsI	TTSAA	5 cut(s)	229, 425, 671, 770, 829
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	6 cut(s)	61, 203, 266, 755, 866, 1015
AluI	AGCT	6 cut(s)	61, 203, 266, 755, 866, 1015
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	252, 265
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	5 cut(s)	127, 327, 462, 841, 991
ApeKI	GCWGC	8 cut(s)	61, 64, 266, 494, 724, 742, 752, 1034
ApoI	RAATTY	1 cut(s)	848
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AspS9I	GGNCC	2 cut(s)	462, 841
AsuC2I	CCSGG	2 cut(s)	924, 990
AsuHPI	GGTGA	2 cut(s)	197, 955
AvaI	CYCGRG	1 cut(s)	208
BaeI	ACNNNNGTAYC	2 cut(s)	392, 425
BalI	TGGCCA	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	693
BbvI	GCAGC	8 cut(s)	48, 51, 253, 481, 711, 754, 764, 1021
BccI	CCATC	2 cut(s)	428, 752
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	924, 990
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	937
Bme1390I	CCNGG	3 cut(s)	603, 924, 990
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	462, 841
BmiI	GGNNCC	3 cut(s)	259, 463, 842
BmrFI	CCNGG	3 cut(s)	603, 924, 990
BmsI	GCATC	2 cut(s)	682, 827
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	2 cut(s)	264, 635
BpuMI	CCSGG	2 cut(s)	924, 990
BsaAI	YACGTR	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	942
BsaJI	CCNNGG	3 cut(s)	345, 549, 923
Bsc4I	CCNNNNNNNGG	2 cut(s)	658, 957
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	4 cut(s)	79, 381, 571, 652
Bse3DI	GCAATG	2 cut(s)	719, 1029
Bse8I	GATNNNNATC	1 cut(s)	942
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	3 cut(s)	345, 549, 923
BseJI	GATNNNNATC	1 cut(s)	942
BseLI	CCNNNNNNNGG	2 cut(s)	658, 957
BseMI	GCAATG	2 cut(s)	719, 1029
BseNI	ACTGG	4 cut(s)	79, 381, 571, 652
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	8 cut(s)	48, 51, 253, 481, 711, 754, 764, 1021
BseYI	CCCAGC	1 cut(s)	1015
Bsh1236I	CGCG	1 cut(s)	806
Bsh1285I	CGRYCG	2 cut(s)	22, 154
BshFI	GGCC	5 cut(s)	129, 329, 464, 843, 993
BsiEI	CGRYCG	2 cut(s)	22, 154
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	28, 126, 923, 990
BslFI	GGGAC	2 cut(s)	67, 675
BslI	CCNNNNNNNGG	2 cut(s)	658, 957
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	2 cut(s)	67, 675
BsmI	GAATGC	1 cut(s)	968
BsnI	GGCC	5 cut(s)	129, 329, 464, 843, 993
BsoBI	CYCGRG	1 cut(s)	208
Bsp143I	GATC	5 cut(s)	19, 151, 257, 472, 937
BspACI	CCGC	5 cut(s)	97, 144, 497, 621, 966
BspANI	GGCC	5 cut(s)	129, 329, 464, 843, 993
BspFNI	CGCG	1 cut(s)	806
BspLI	GGNNCC	3 cut(s)	259, 463, 842
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	2 cut(s)	252, 265
BsrDI	GCAATG	2 cut(s)	719, 1029
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	4 cut(s)	79, 381, 571, 652
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	345, 549, 923
BssMI	GATC	5 cut(s)	19, 151, 257, 472, 937
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	1 cut(s)	905
BstBAI	YACGTR	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	201, 331, 740
BstDEI	CTNAG	1 cut(s)	476
BstDSI	CCRYGG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	806
BstKTI	GATC	5 cut(s)	22, 154, 260, 475, 940
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	5 cut(s)	19, 151, 257, 472, 937
BstMCI	CGRYCG	2 cut(s)	22, 154
BstMWI	GCNNNNNNNGC	2 cut(s)	724, 1034
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	1 cut(s)	801
BstSCI	CCNGG	3 cut(s)	601, 922, 988
BstSFI	CTRYAG	1 cut(s)	44
BstUI	CGCG	1 cut(s)	806
BstV1I	GCAGC	8 cut(s)	48, 51, 253, 481, 711, 754, 764, 1021
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	2 cut(s)	257, 937
BstYI	RGATCY	2 cut(s)	257, 937
BsuRI	GGCC	5 cut(s)	129, 329, 464, 843, 993
BtgI	CCRYGG	1 cut(s)	345
BtsI	GCAGTG	2 cut(s)	194, 319
BtsIMutI	CAGTG	2 cut(s)	194, 319
Cac8I	GCNNGC	3 cut(s)	201, 331, 740
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	462, 841
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	3 cut(s)	55, 556, 901
CviAII	CATG	4 cut(s)	532, 617, 798, 872
CviQI	GTAC	3 cut(s)	55, 556, 901
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	5 cut(s)	21, 153, 259, 474, 939
DpnII	GATC	5 cut(s)	19, 151, 257, 472, 937
DraIII	CACNNNGTG	1 cut(s)	1007
DrdI	GACNNNNNNGTC	1 cut(s)	892
DriI	GACNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	1 cut(s)	892
EaeI	YGGCCR	1 cut(s)	327
Eam1105I	GACNNNNNGTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	4 cut(s)	535, 620, 801, 875
FaqI	GGGAC	2 cut(s)	67, 675
FatI	CATG	4 cut(s)	531, 616, 797, 871
FauNDI	CATATG	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	775
FspBI	CTAG	1 cut(s)	789
GsaI	CCCAGC	1 cut(s)	1019
GsuI	CTGGAG	2 cut(s)	264, 635
HaeIII	GGCC	5 cut(s)	129, 329, 464, 843, 993
HapII	CCGG	4 cut(s)	28, 126, 923, 990
HgaI	GACGC	1 cut(s)	734
Hin1II	CATG	4 cut(s)	535, 620, 801, 875
HincII	GTYRAC	2 cut(s)	163, 597
HindII	GTYRAC	2 cut(s)	163, 597
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	9 cut(s)	240, 389, 395, 480, 598, 611, 663, 698, 1044
HpaII	CCGG	4 cut(s)	28, 126, 923, 990
HphI	GGTGA	2 cut(s)	197, 955
Hpy166II	GTNNAC	4 cut(s)	163, 597, 776, 963
Hpy188I	TCNGA	6 cut(s)	10, 223, 394, 610, 898, 1049
Hpy188III	TCNNGA	5 cut(s)	23, 261, 281, 811, 935
Hpy8I	GTNNAC	4 cut(s)	163, 597, 776, 963
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	1 cut(s)	823
HpyCH4III	ACNGT	1 cut(s)	905
HpyCH4IV	ACGT	2 cut(s)	38, 335
HpyCH4V	TGCA	6 cut(s)	46, 199, 312, 626, 742, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	724, 1034
HpyF3I	CTNAG	1 cut(s)	476
HpySE526I	ACGT	2 cut(s)	38, 335
Hsp92II	CATG	4 cut(s)	535, 620, 801, 875
Kzo9I	GATC	5 cut(s)	19, 151, 257, 472, 937
Lsp1109I	GCAGC	8 cut(s)	48, 51, 253, 481, 711, 754, 764, 1021
LweI	GCATC	2 cut(s)	682, 827
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	2 cut(s)	38, 335
MaeIII	GTNAC	4 cut(s)	23, 192, 320, 800
MalI	GATC	5 cut(s)	21, 153, 259, 474, 939
MboI	GATC	5 cut(s)	19, 151, 257, 472, 937
MboII	GAAGA	4 cut(s)	413, 683, 693, 995
MfeI	CAATTG	1 cut(s)	181
MflI	RGATCY	2 cut(s)	257, 937
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	6 cut(s)	181, 224, 272, 520, 565, 848
MluI	ACGCGT	1 cut(s)	804
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	5 cut(s)	383, 404, 592, 657, 707
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	3 cut(s)	357, 563, 656
MslI	CAYNNNNRTG	1 cut(s)	621
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	2 cut(s)	61, 755
MspI	CCGG	4 cut(s)	28, 126, 923, 990
MspR9I	CCNGG	3 cut(s)	603, 924, 990
MunI	CAATTG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	968
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	806
MwoI	GCNNNNNNNGC	2 cut(s)	724, 1034
NciI	CCSGG	2 cut(s)	924, 990
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	5 cut(s)	19, 151, 257, 472, 937
NlaIII	CATG	4 cut(s)	535, 620, 801, 875
NlaIV	GGNNCC	3 cut(s)	259, 463, 842
NmeAIII	GCCGAG	2 cut(s)	490, 721
NmuCI	GTSAC	2 cut(s)	23, 192
NspI	RCATGY	1 cut(s)	801
PciI	ACATGT	1 cut(s)	797
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 147
PctI	GAATGC	1 cut(s)	968
PfeI	GAWTC	4 cut(s)	240, 480, 611, 1044
PflMI	CCANNNNNTGG	1 cut(s)	658
Ple19I	CGATCG	2 cut(s)	22, 154
PleI	GAGTC	5 cut(s)	383, 403, 592, 657, 706
PpsI	GAGTC	5 cut(s)	383, 403, 592, 657, 706
Ppu21I	YACGTR	1 cut(s)	336
PscI	ACATGT	1 cut(s)	797
Psp6I	CCWGG	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	3 cut(s)	259, 463, 842
PspPI	GGNCC	2 cut(s)	462, 841
PstI	CTGCAG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	257, 937
PvuI	CGATCG	2 cut(s)	22, 154
PvuII	CAGCTG	2 cut(s)	61, 755
RsaI	GTAC	3 cut(s)	56, 557, 902
RsaNI	GTAC	3 cut(s)	55, 556, 901
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	357, 563, 656
Sau3AI	GATC	5 cut(s)	19, 151, 257, 472, 937
Sau96I	GGNCC	2 cut(s)	462, 841
SchI	GAGTC	5 cut(s)	383, 404, 592, 657, 707
ScrFI	CCNGG	3 cut(s)	603, 924, 990
SfaNI	GCATC	2 cut(s)	682, 827
SfcI	CTRYAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	6 cut(s)	181, 224, 272, 520, 565, 848
SsiI	CCGC	5 cut(s)	97, 144, 497, 621, 966
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	3 cut(s)	601, 922, 988
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	905
TaiI	ACGT	2 cut(s)	41, 338
TaqI	TCGA	3 cut(s)	18, 132, 398
TasI	AATT	6 cut(s)	181, 224, 272, 520, 565, 848
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	2 cut(s)	146, 500
TfiI	GAWTC	4 cut(s)	240, 480, 611, 1044
Tru1I	TTAA	3 cut(s)	357, 563, 656
Tru9I	TTAA	3 cut(s)	357, 563, 656
TscAI	CASTG	2 cut(s)	201, 319
TseFI	GTSAC	2 cut(s)	23, 192
TseI	GCWGC	8 cut(s)	61, 64, 266, 494, 724, 742, 752, 1034
Tsp45I	GTSAC	2 cut(s)	23, 192
TspDTI	ATGAA	2 cut(s)	472, 841
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	2 cut(s)	201, 319
Van91I	CCANNNNNTGG	1 cut(s)	658
XapI	RAATTY	1 cut(s)	848
XceI	RCATGY	1 cut(s)	801
XmiI	GTMKAC	1 cut(s)	775
XspI	CTAG	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.