Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007760

Physical Location & Seq

Genomic Coordinates Reverse (-)

25641956 .. 25645521

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G233300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGATTTGGAGCTTTTCGAGCGTGACCGGCATGTGACGTTTCTGCAGATGATGTACCAGCTTCTGCCGTCCCCCTATCAGAGCCAAGAAATCAACCGCCTCACTCTCGCCTACTTCGTCATCTCCGGCCTCGACCTCCTCAACTCCCTCGATCGCCTAGTTGACAAGGATGAAGTTGCCACCTGGGTTCTGTCATTGCAAGCTCATCCAAGAAGCACAGCCGAATTGAACAATGGACAATTCTATGGTTTCCATGGTTCCAGAGCTGCTCAATTTCCTCCAGAGAATAATGATAATGGGGCTTTAAATCCCAGTGTCAGTAACCTGGCGAGCACGTATTGTGCCCTAGCCTTACTTAAAATCGTTGGCTATAACTTGTCCAGTATCGACTCTGAGTCAATACTGACGTCAATGAGAAATCTTCAACAGCCTGATGGGAGTTTTATGCCTATACATACAGGAGCCGAGACTGATCTTCGATTTGTTTATTGTGCTGCGGCCATTTGTCATATGTTGGGAAATTGGAGTGGCATGGACAAGGAGAAAGCCAAGGAGTACATATTAAAGTGCCAGTCATATGATGGTGGCTTTGGGTTGATTCCTGGTTCAGAATCTCATGGTGGTGCAACATATTGTGGTGTTACATCTCTCCGCTTAATGGGATTCATTGAAGATGAAATTCTTTCTAAAAATGCACCGTCTTCCATAATAGATGTGCCATTGTTGCTGGATTGGTGCGTGCAGAGGCAGGCAGCTGACGGTGGATTTCAGGGTAGACCCAACAAGCCTAGTGACACATGTTATGCATTTTGGATTGCATCAGTTTTGAAGATTTTAGGGGGCCATAAATTCATTGACAAGAAGGCTTTGCATGGATTTTTGCTACCTTGTCAGTCTGAGTACGGTGGTTTCAGCAAGTTCCCAGGGCAGCTGCCAGATCTCTATCACTCCTATTATGGGCTTACGGCATTCAGCCTCTTGGAAGAACCAGGTCTGAATCCACTGTGTGTTGAGCTGGGAATGACAGCAATTGCTGCCATGGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004662 GO:0004663 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005953 GO:0005968 GO:0006464 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008284 GO:0008318 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018344 GO:0019222 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034097 GO:0036211 GO:0042127 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0051769 GO:0051771 GO:0060255 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

350

Amino Acids

38.41

Weight (kDa)

5.16

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39550
fragaria_vesca	FvH4_7g22110 FvH4_7g22110 FvH4_7g22110
malus_domestica	MD01G1126400.v1.1 MD07G1196300.v1.1
prunus_persica	Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1 Prupe.2G233300_v2.0.a1
pyrus_communis	pycom01g15210 pycom07g18440
rosa_chinensis	RchiOBHm_Chr1g0366501
rosa_laevigata	RLG00000027342
rosa_multiflora	Rmu_ssc0000250.1_g000021
rosa_roxburghii	Rroxscaffold_4G00289870 Rroxscaffold_4G00290130
rosa_rugosa	Rorug01G0330500 Rorug01G0330500
rosa_samantha	Rh1AG338400 Rh1BG299900 Rh1CG315000 Rh1DG331700
rosa_wichuraiana	Rw1G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	775
AciI	CCGC	3 cut(s)	97, 497, 652
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	2 cut(s)	678, 848
AcyI	GRCGYC	1 cut(s)	407
AdeI	CACNNNGTG	1 cut(s)	1007
AfaI	GTAC	3 cut(s)	56, 557, 902
AfiI	CCNNNNNNNGG	2 cut(s)	658, 957
AflIII	ACRYGT	1 cut(s)	797
AgsI	TTSAA	4 cut(s)	229, 425, 671, 829
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	5 cut(s)	182, 324, 601, 922, 988
AluBI	AGCT	7 cut(s)	13, 61, 203, 266, 755, 931, 1015
AluI	AGCT	7 cut(s)	13, 61, 203, 266, 755, 931, 1015
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	3 cut(s)	127, 498, 841
ApeKI	GCWGC	6 cut(s)	266, 494, 752, 928, 931, 1034
ApoI	RAATTY	2 cut(s)	678, 848
AspS9I	GGNCC	1 cut(s)	841
BaeGI	GKGCMC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	6 cut(s)	253, 481, 764, 918, 940, 1021
BccI	CCATC	2 cut(s)	428, 575
BceAI	ACGGC	2 cut(s)	52, 981
BciT130I	CCWGG	5 cut(s)	184, 326, 603, 924, 990
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	3 cut(s)	158, 347, 789
BfmI	CTRYAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	7 cut(s)	267, 495, 498, 753, 929, 932, 1035
BlsI	GCNGC	7 cut(s)	268, 496, 499, 754, 930, 933, 1036
Bme1390I	CCNGG	5 cut(s)	184, 326, 603, 924, 990
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	841
BmiI	GGNNCC	3 cut(s)	259, 463, 842
BmrFI	CCNGG	5 cut(s)	184, 326, 603, 924, 990
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	827
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	942
BsaHI	GRCGYC	1 cut(s)	407
BsaJI	CCNNGG	6 cut(s)	183, 253, 549, 922, 923, 1038
Bsc4I	CCNNNNNNNGG	2 cut(s)	658, 957
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	3 cut(s)	312, 381, 571
Bse3DI	GCAATG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	942
BseBI	CCWGG	5 cut(s)	184, 326, 603, 924, 990
BseDI	CCNNGG	6 cut(s)	183, 253, 549, 922, 923, 1038
BseGI	GGATG	2 cut(s)	175, 205
BseJI	GATNNNNATC	1 cut(s)	942
BseLI	CCNNNNNNNGG	2 cut(s)	658, 957
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	384, 888
BseNI	ACTGG	3 cut(s)	312, 381, 571
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	6 cut(s)	253, 481, 764, 918, 940, 1021
BseYI	CCCAGC	1 cut(s)	1015
BsgI	GTGCAG	1 cut(s)	761
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	3 cut(s)	129, 500, 843
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	28, 126
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	658, 957
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	968
BsnI	GGCC	3 cut(s)	129, 500, 843
Bsp1286I	GDGCHC	2 cut(s)	335, 346
Bsp143I	GATC	3 cut(s)	151, 472, 937
Bsp19I	CCATGG	2 cut(s)	253, 1038
BspACI	CCGC	3 cut(s)	97, 497, 652
BspANI	GGCC	3 cut(s)	129, 500, 843
BspCNI	CTCAG	2 cut(s)	385, 889
BspLI	GGNNCC	3 cut(s)	259, 463, 842
BspMAI	CTGCAG	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	3 cut(s)	312, 381, 571
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	6 cut(s)	183, 253, 549, 922, 923, 1038
BssMI	GATC	3 cut(s)	151, 472, 937
BssNI	GRCGYC	1 cut(s)	407
BssT1I	CCWWGG	3 cut(s)	253, 549, 1038
Bst2UI	CCWGG	5 cut(s)	184, 326, 603, 924, 990
Bst4CI	ACNGT	4 cut(s)	699, 761, 905, 1005
BstACI	GRCGYC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	336
BstC8I	GCNNGC	4 cut(s)	201, 331, 740, 750
BstDEI	CTNAG	2 cut(s)	393, 897
BstDSI	CCRYGG	2 cut(s)	253, 1038
BstF5I	GGATG	2 cut(s)	175, 205
BstKTI	GATC	3 cut(s)	154, 475, 940
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	3 cut(s)	151, 472, 937
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 28, 724, 1034
BstNI	CCWGG	5 cut(s)	184, 326, 603, 924, 990
BstNSI	RCATGY	2 cut(s)	35, 801
BstSCI	CCNGG	5 cut(s)	182, 324, 601, 922, 988
BstSFI	CTRYAG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	6 cut(s)	253, 481, 764, 918, 940, 1021
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuRI	GGCC	3 cut(s)	129, 500, 843
BtgI	CCRYGG	2 cut(s)	253, 1038
BtsCI	GGATG	2 cut(s)	175, 205
BtsIMutI	CAGTG	2 cut(s)	319, 1001
Cac8I	GCNNGC	4 cut(s)	201, 331, 740, 750
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	841
CsiI	ACCWGGT	1 cut(s)	988
Csp6I	GTAC	3 cut(s)	55, 556, 901
CviAII	CATG	7 cut(s)	32, 254, 532, 617, 798, 872, 1039
CviQI	GTAC	3 cut(s)	55, 556, 901
DdeI	CTNAG	2 cut(s)	393, 897
DpnI	GATC	3 cut(s)	153, 474, 939
DpnII	GATC	3 cut(s)	151, 472, 937
DraI	TTTAAA	1 cut(s)	306
DraIII	CACNNNGTG	1 cut(s)	1007
DriI	GACNNNNNGTC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	498
Eam1105I	GACNNNNNGTC	1 cut(s)	394
Eco130I	CCWWGG	3 cut(s)	253, 549, 1038
EcoRII	CCWGG	5 cut(s)	182, 324, 601, 922, 988
EcoT14I	CCWWGG	3 cut(s)	253, 549, 1038
EcoT22I	ATGCAT	1 cut(s)	808
ErhI	CCWWGG	3 cut(s)	253, 549, 1038
FaeI	CATG	7 cut(s)	35, 257, 535, 620, 801, 875, 1042
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	7 cut(s)	31, 253, 531, 616, 797, 871, 1038
FauNDI	CATATG	2 cut(s)	510, 577
FblI	GTMKAC	1 cut(s)	775
Fnu4HI	GCNGC	7 cut(s)	267, 495, 498, 753, 929, 932, 1035
FokI	GGATG	2 cut(s)	182, 192
Fsp4HI	GCNGC	7 cut(s)	267, 495, 498, 753, 929, 932, 1035
FspBI	CTAG	3 cut(s)	158, 347, 789
GluI	GCNGC	7 cut(s)	267, 495, 498, 753, 929, 932, 1035
GsaI	CCCAGC	1 cut(s)	1019
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	129, 500, 843
HapII	CCGG	2 cut(s)	28, 126
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	7 cut(s)	35, 257, 535, 620, 801, 875, 1042
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	7 cut(s)	389, 395, 598, 611, 663, 997, 1044
HpaII	CCGG	2 cut(s)	28, 126
Hpy166II	GTNNAC	2 cut(s)	163, 776
Hpy188I	TCNGA	6 cut(s)	81, 394, 610, 898, 996, 1049
Hpy188III	TCNNGA	2 cut(s)	261, 281
Hpy8I	GTNNAC	2 cut(s)	163, 776
HpyAV	CCTTC	1 cut(s)	856
HpyCH4III	ACNGT	4 cut(s)	699, 761, 905, 1005
HpyCH4IV	ACGT	3 cut(s)	38, 335, 407
HpyCH4V	TGCA	8 cut(s)	46, 199, 626, 695, 742, 806, 818, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 28, 724, 1034
HpyF3I	CTNAG	2 cut(s)	393, 897
HpySE526I	ACGT	3 cut(s)	38, 335, 407
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	7 cut(s)	35, 257, 535, 620, 801, 875, 1042
Kzo9I	GATC	3 cut(s)	151, 472, 937
LmnI	GCTCC	2 cut(s)	10, 461
Lsp1109I	GCAGC	6 cut(s)	253, 481, 764, 918, 940, 1021
LweI	GCATC	1 cut(s)	827
MabI	ACCWGGT	1 cut(s)	988
MaeI	CTAG	3 cut(s)	158, 347, 789
MaeII	ACGT	3 cut(s)	38, 335, 407
MaeIII	GTNAC	5 cut(s)	23, 34, 320, 640, 791
MalI	GATC	3 cut(s)	153, 474, 939
MboI	GATC	3 cut(s)	151, 472, 937
MboII	GAAGA	6 cut(s)	413, 467, 683, 693, 841, 995
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	2 cut(s)	335, 346
MluCI	AATT	7 cut(s)	224, 239, 272, 520, 678, 848, 1029
MlyI	GAGTC	2 cut(s)	383, 404
MnlI	CCTC	8 cut(s)	110, 140, 146, 149, 158, 288, 738, 986
Mph1103I	ATGCAT	1 cut(s)	808
MseI	TTAA	4 cut(s)	305, 357, 563, 656
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	2 cut(s)	755, 931
MspI	CCGG	2 cut(s)	28, 126
MspR9I	CCNGG	5 cut(s)	184, 326, 603, 924, 990
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	1 cut(s)	968
MvaI	CCWGG	5 cut(s)	184, 326, 603, 924, 990
MwoI	GCNNNNNNNGC	4 cut(s)	19, 28, 724, 1034
NcoI	CCATGG	2 cut(s)	253, 1038
NdeI	CATATG	2 cut(s)	510, 577
NdeII	GATC	3 cut(s)	151, 472, 937
NlaIII	CATG	7 cut(s)	35, 257, 535, 620, 801, 875, 1042
NlaIV	GGNNCC	3 cut(s)	259, 463, 842
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	3 cut(s)	23, 34, 791
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	2 cut(s)	35, 801
PasI	CCCWGGG	1 cut(s)	923
PciI	ACATGT	1 cut(s)	797
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	968
PfeI	GAWTC	5 cut(s)	598, 611, 663, 997, 1044
PkrI	GCNGC	7 cut(s)	268, 496, 499, 754, 930, 933, 1036
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	2 cut(s)	383, 403
PpsI	GAGTC	2 cut(s)	383, 403
Ppu21I	YACGTR	1 cut(s)	336
PscI	ACATGT	1 cut(s)	797
Psp6I	CCWGG	5 cut(s)	182, 324, 601, 922, 988
PspFI	CCCAGC	1 cut(s)	1015
PspGI	CCWGG	5 cut(s)	182, 324, 601, 922, 988
PspN4I	GGNNCC	3 cut(s)	259, 463, 842
PspPI	GGNCC	1 cut(s)	841
PstI	CTGCAG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	937
PvuI	CGATCG	1 cut(s)	154
PvuII	CAGCTG	2 cut(s)	755, 931
RsaI	GTAC	3 cut(s)	56, 557, 902
RsaNI	GTAC	3 cut(s)	55, 556, 901
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	4 cut(s)	305, 357, 563, 656
SatI	GCNGC	7 cut(s)	267, 495, 498, 753, 929, 932, 1035
Sau3AI	GATC	3 cut(s)	151, 472, 937
Sau96I	GGNCC	1 cut(s)	841
SchI	GAGTC	2 cut(s)	383, 404
ScrFI	CCNGG	5 cut(s)	184, 326, 603, 924, 990
SduI	GDGCHC	2 cut(s)	335, 346
SexAI	ACCWGGT	1 cut(s)	988
SfaNI	GCATC	1 cut(s)	827
SfcI	CTRYAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	7 cut(s)	224, 239, 272, 520, 678, 848, 1029
SsiI	CCGC	3 cut(s)	97, 497, 652
SspMI	CTAG	3 cut(s)	158, 347, 789
StyD4I	CCNGG	5 cut(s)	182, 324, 601, 922, 988
StyI	CCWWGG	3 cut(s)	253, 549, 1038
TaaI	ACNGT	4 cut(s)	699, 761, 905, 1005
TaiI	ACGT	3 cut(s)	41, 338, 410
TaqI	TCGA	5 cut(s)	18, 132, 150, 387, 478
TasI	AATT	7 cut(s)	224, 239, 272, 520, 678, 848, 1029
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	5 cut(s)	598, 611, 663, 997, 1044
Tru1I	TTAA	4 cut(s)	305, 357, 563, 656
Tru9I	TTAA	4 cut(s)	305, 357, 563, 656
TscAI	CASTG	2 cut(s)	319, 1008
TseFI	GTSAC	3 cut(s)	23, 34, 791
TseI	GCWGC	6 cut(s)	266, 494, 752, 928, 931, 1034
Tsp45I	GTSAC	3 cut(s)	23, 34, 791
TspDTI	ATGAA	4 cut(s)	186, 655, 690, 841
TspRI	CASTG	2 cut(s)	319, 1008
XapI	RAATTY	2 cut(s)	678, 848
XceI	RCATGY	2 cut(s)	35, 801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	775
XspI	CTAG	3 cut(s)	158, 347, 789
ZraI	GACGTC	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.