Rmu_ssc0000250.1_g000021

Geranylgeranyl transferase type-1 subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000250.1
Physical Location & Seq
Reverse (-)
112096 .. 118230
6135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000250.1_g000021.1.cds

Sequence Viewer

Length: 1743 bp
atgtaccagggtggtgctgctcctgacatgggtggtggcggggaagctgatgttcccccgtctggtggaagtggtgctggtccaaagattgaagaatataattttccctatttcaccttgcacttctcagcaaacgtcaaaaccgtcgccttgttcgtcttcatgactgaagaggcgtcggagcgggtcagggttttagggtttttctgccagccattcgagagagaaaagcacgtgacttttctggagatgatgtaccggctcctcccacaccagtaccagacccaagagatcaaccgcctcactctcgcctacttcgtcgtctccggcctcgacctcctccgcgctctccaccgcattgacaaggacgcagttgccgattgggttctgtcactccaagctcgcccaagtgacagcgaccaagtcaacaatgggcaattctatgggttttatggttccagaagttctcagttttctactcaagatgataataatggggcttcgagttccggtatcagtaacttggcaagcacgtattgtgctttggccatactgaaaattatcggctatgacttgtctagtatcgactctgagttgttattgaagtcgatgaggaaccttcaacagcctgatgggagttttatgcctatacatacaggggcggagactgatcttcgatttgtttattgtgctggtggtgcaatctattgtggtattacttctctccggttgatgggattccttgaagaggatgtactttccaaaaatgtgtcatcctccatagtaaatgtgcctctgctgctggtttggtgcttacagaggcaggcaggtgatggtggattccagggtagacccaacaagcctagtgacacatgttatgcattttggattgcatcagttttgaagattttaggggggcacaaattgattgaccagaacgctttacgtggattcttaataacttgtcagtctcagattgacaaggacgcagttgccgattgggttctgtcactccaagctcgcccaagtgacagcgaccaaggcaacaatgggcaattctatgggttttatggttccagaagttctcagttttctactcaagatgataataatggggcttcgagttccggtatcagtaacttggcaagcacgtattgtgctttggccatactgaaaattatcggctatgacttgtctagtatcgactctgagttgttattgaagtcgatgaggaatcttcaacagcctgatgggagttttatgcctatacatacaggggcggagactgatcttcgatttgtttattgtgctggtggtgcaatttattgtggtattacttctctccggttgatgggattccttgaagaggatgtactttccaaaaatgcgtcatcctccatagtaaatgtgcctctgctgctggtttggtgcttacagaggcaggcaggtgatggtggattccagggtagacccaacaagcctagtgacacatgttatgcattttggattacatcagttttgaagattttaggggggcacaaattgattaaccagaaagctttacgtggattcttaataacttgtcagtctcagtatggtggtttcagcaaatttccaggggacctgccagatctgtatcactcttattatgggtttacagcattcagccttctggaagaacctggcctcaatccactctgtgttgagctaggaatgacggatcttgctgccataggaatctaa

Protein Analysis

580

Amino Acids

63.34

Weight (kDa)

5.14

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 818, 1436
Acc36I ACCTGC 3 cut(s) 818, 1436, 1632
AccBSI CCGCTC 1 cut(s) 184
AccI GTMKAC 2 cut(s) 850, 1468
AccII CGCG 1 cut(s) 345
AciI CCGC 7 cut(s) 39, 184, 298, 343, 355, 662, 1280
AclWI GGATC 1 cut(s) 1728
AcoI YGGCCR 2 cut(s) 546, 1164
AcsI RAATTY 1 cut(s) 1610
AcuI CTGAAG 1 cut(s) 189
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 1700
AfaI GTAC 5 cut(s) 5, 257, 278, 756, 1374
AfiI CCNNNNNNNGG 7 cut(s) 29, 62, 65, 733, 748, 1351, 1366
AflIII ACRYGT 2 cut(s) 872, 1490
AgsI TTSAA 9 cut(s) 92, 604, 623, 746, 904, 1222, 1241, 1364, 1522
AjnI CCWGG 5 cut(s) 6, 843, 1461, 1615, 1681
AluBI AGCT 5 cut(s) 47, 401, 1019, 1559, 1708
AluI AGCT 5 cut(s) 47, 401, 1019, 1559, 1708
Alw26I GTCTC 5 cut(s) 328, 659, 975, 1277, 1593
AlwI GGATC 1 cut(s) 1728
AoxI GGCC 4 cut(s) 328, 546, 1164, 1684
ApeKI GCWGC 4 cut(s) 17, 799, 1417, 1727
ApoI RAATTY 1 cut(s) 1610
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 80, 1621
AsuHPI GGTGA 3 cut(s) 106, 842, 1460
AvaII GGWCC 2 cut(s) 80, 1621
BaeGI GKGCMC 2 cut(s) 921, 1539
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BalI TGGCCA 2 cut(s) 548, 1166
BarI GAAGNNNNNNTAC 4 cut(s) 738, 770, 1356, 1388
BbrPI CACGTG 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 4 cut(s) 4, 786, 1404, 1714
BccI CCATC 6 cut(s) 626, 727, 827, 1244, 1345, 1445
BciT130I CCWGG 5 cut(s) 8, 845, 1463, 1617, 1683
BcoDI GTCTC 5 cut(s) 328, 659, 975, 1277, 1593
BfaI CTAG 5 cut(s) 579, 864, 1197, 1482, 1709
BfuAI ACCTGC 3 cut(s) 818, 1436, 1632
BglII AGATCT 1 cut(s) 1630
BisI GCNGC 4 cut(s) 18, 800, 1418, 1728
BlsI GCNGC 4 cut(s) 19, 801, 1419, 1729
Bme1390I CCNGG 5 cut(s) 8, 845, 1463, 1617, 1683
Bme18I GGWCC 2 cut(s) 80, 1621
BmgT120I GGNCC 2 cut(s) 80, 1621
BmiI GGNNCC 5 cut(s) 263, 457, 617, 1075, 1622
BmrFI CCNGG 5 cut(s) 8, 845, 1463, 1617, 1683
BmsI GCATC 1 cut(s) 902
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 465, 1083
BsaAI YACGTR 5 cut(s) 235, 534, 947, 1152, 1565
BsaBI GATNNNNATC 1 cut(s) 1635
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 5 cut(s) 7, 844, 1039, 1462, 1616
BsaWI WCCGGW 4 cut(s) 509, 726, 1127, 1344
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 7 cut(s) 29, 62, 65, 733, 748, 1351, 1366
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 1635
BseBI CCWGG 5 cut(s) 8, 845, 1463, 1617, 1683
BseDI CCNNGG 5 cut(s) 7, 844, 1039, 1462, 1616
BseGI GGATG 4 cut(s) 757, 773, 1375, 1391
BseJI GATNNNNATC 1 cut(s) 1635
BseLI CCNNNNNNNGG 7 cut(s) 29, 62, 65, 733, 748, 1351, 1366
BseMII CTCAG 7 cut(s) 141, 482, 582, 986, 1100, 1200, 1604
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 2 cut(s) 254, 329
BseSI GKGCMC 2 cut(s) 921, 1539
BseXI GCAGC 4 cut(s) 4, 786, 1404, 1714
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 4 cut(s) 330, 548, 1166, 1686
BsiSI CCGG 6 cut(s) 259, 327, 510, 727, 1128, 1345
BslFI GGGAC 1 cut(s) 1634
BslI CCNNNNNNNGG 7 cut(s) 29, 62, 65, 733, 748, 1351, 1366
BsmAI GTCTC 5 cut(s) 328, 659, 975, 1277, 1593
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 1634
BsmI GAATGC 1 cut(s) 1661
BsnI GGCC 4 cut(s) 330, 548, 1166, 1686
Bsp1286I GDGCHC 2 cut(s) 921, 1539
Bsp143I GATC 5 cut(s) 291, 670, 1288, 1630, 1720
BspACI CCGC 7 cut(s) 39, 184, 298, 343, 355, 662, 1280
BspANI GGCC 4 cut(s) 330, 548, 1166, 1686
BspCNI CTCAG 7 cut(s) 140, 481, 583, 985, 1099, 1201, 1603
BspFNI CGCG 1 cut(s) 345
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 5 cut(s) 263, 457, 617, 1075, 1622
BspMI ACCTGC 3 cut(s) 818, 1436, 1632
BspPI GGATC 1 cut(s) 1728
BsrBI CCGCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 5 cut(s) 7, 844, 1039, 1462, 1616
BssMI GATC 5 cut(s) 291, 670, 1288, 1630, 1720
BssNI GRCGYC 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 1039
Bst2UI CCWGG 5 cut(s) 8, 845, 1463, 1617, 1683
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 3 cut(s) 165, 741, 1359
BstACI GRCGYC 1 cut(s) 176
BstBAI YACGTR 5 cut(s) 235, 534, 947, 1152, 1565
BstC8I GCNNGC 7 cut(s) 212, 403, 529, 825, 1021, 1147, 1443
BstDEI CTNAG 7 cut(s) 127, 468, 591, 972, 1086, 1209, 1590
BstENI CCTNNNNNAGG 2 cut(s) 746, 1364
BstF5I GGATG 4 cut(s) 757, 773, 1375, 1391
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 5 cut(s) 294, 673, 1291, 1633, 1723
BstMAI GTCTC 5 cut(s) 328, 659, 975, 1277, 1593
BstMBI GATC 5 cut(s) 291, 670, 1288, 1630, 1720
BstMWI GCNNNNNNNGC 5 cut(s) 698, 799, 1041, 1316, 1417
BstNI CCWGG 5 cut(s) 8, 845, 1463, 1617, 1683
BstNSI RCATGY 2 cut(s) 876, 1494
BstSCI CCNGG 5 cut(s) 6, 843, 1461, 1615, 1681
BstSLI GKGCMC 2 cut(s) 921, 1539
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 4 cut(s) 4, 786, 1404, 1714
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 1630, 1720
BstYI RGATCY 2 cut(s) 1630, 1720
BsuRI GGCC 4 cut(s) 330, 548, 1166, 1686
BtsCI GGATG 4 cut(s) 757, 773, 1375, 1391
BveI ACCTGC 3 cut(s) 818, 1436, 1632
Cac8I GCNNGC 7 cut(s) 212, 403, 529, 825, 1021, 1147, 1443
CciI TCATGA 1 cut(s) 162
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 80, 1621
CseI GACGC 4 cut(s) 165, 377, 995, 1377
Csp6I GTAC 5 cut(s) 4, 256, 277, 755, 1373
CviAII CATG 4 cut(s) 28, 163, 873, 1491
CviQI GTAC 5 cut(s) 4, 256, 277, 755, 1373
DdeI CTNAG 7 cut(s) 127, 468, 591, 972, 1086, 1209, 1590
DpnI GATC 5 cut(s) 293, 672, 1290, 1632, 1722
DpnII GATC 5 cut(s) 291, 670, 1288, 1630, 1720
DraIII CACNNNGTG 1 cut(s) 1700
EaeI YGGCCR 2 cut(s) 546, 1164
Eam1104I CTCTTC 3 cut(s) 165, 741, 1359
EarI CTCTTC 3 cut(s) 165, 741, 1359
EciI GGCGGA 2 cut(s) 677, 1295
Eco130I CCWWGG 1 cut(s) 1039
Eco47I GGWCC 2 cut(s) 80, 1621
Eco57I CTGAAG 1 cut(s) 189
Eco72I CACGTG 1 cut(s) 235
EcoNI CCTNNNNNAGG 2 cut(s) 746, 1364
EcoO109I RGGNCCY 1 cut(s) 1621
EcoRII CCWGG 5 cut(s) 6, 843, 1461, 1615, 1681
EcoT14I CCWWGG 1 cut(s) 1039
EcoT22I ATGCAT 2 cut(s) 883, 1501
ErhI CCWWGG 1 cut(s) 1039
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 4 cut(s) 31, 166, 876, 1494
FaqI GGGAC 1 cut(s) 1634
FatI CATG 4 cut(s) 27, 162, 872, 1490
FauI CCCGC 2 cut(s) 32, 177
FblI GTMKAC 2 cut(s) 850, 1468
Fnu4HI GCNGC 4 cut(s) 18, 800, 1418, 1728
FokI GGATG 4 cut(s) 760, 764, 1378, 1382
Fsp4HI GCNGC 4 cut(s) 18, 800, 1418, 1728
FspBI CTAG 5 cut(s) 579, 864, 1197, 1482, 1709
GlaI GCGC 1 cut(s) 346
GluI GCNGC 4 cut(s) 18, 800, 1418, 1728
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 4 cut(s) 330, 548, 1166, 1686
HapII CCGG 6 cut(s) 259, 327, 510, 727, 1128, 1345
HgaI GACGC 4 cut(s) 165, 377, 995, 1377
HhaI GCGC 1 cut(s) 347
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 4 cut(s) 31, 166, 876, 1494
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 1557
HpaII CCGG 6 cut(s) 259, 327, 510, 727, 1128, 1345
HphI GGTGA 3 cut(s) 106, 842, 1460
Hpy166II GTNNAC 4 cut(s) 427, 851, 1469, 1656
Hpy188I TCNGA 4 cut(s) 181, 592, 975, 1210
Hpy188III TCNNGA 9 cut(s) 23, 163, 220, 245, 459, 482, 1077, 1100, 1673
Hpy8I GTNNAC 4 cut(s) 427, 851, 1469, 1656
Hpy99I CGWCG 3 cut(s) 149, 181, 323
HpyAV CCTTC 2 cut(s) 629, 1679
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 6 cut(s) 135, 234, 533, 946, 1151, 1564
HpyCH4V TGCA 6 cut(s) 121, 701, 881, 893, 1319, 1499
HpyF10VI GCNNNNNNNGC 5 cut(s) 698, 799, 1041, 1316, 1417
HpyF3I CTNAG 7 cut(s) 127, 468, 591, 972, 1086, 1209, 1590
HpySE526I ACGT 6 cut(s) 135, 234, 533, 946, 1151, 1564
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 4 cut(s) 31, 166, 876, 1494
HspAI GCGC 1 cut(s) 345
Kzo9I GATC 5 cut(s) 291, 670, 1288, 1630, 1720
LmnI GCTCC 3 cut(s) 25, 181, 267
Lsp1109I GCAGC 4 cut(s) 4, 786, 1404, 1714
LweI GCATC 1 cut(s) 902
MaeI CTAG 5 cut(s) 579, 864, 1197, 1482, 1709
MaeII ACGT 6 cut(s) 135, 234, 533, 946, 1151, 1564
MaeIII GTNAC 9 cut(s) 235, 390, 410, 518, 866, 1008, 1028, 1136, 1484
MalI GATC 5 cut(s) 293, 672, 1290, 1632, 1722
MbiI CCGCTC 1 cut(s) 184
MboI GATC 5 cut(s) 291, 670, 1288, 1630, 1720
MflI RGATCY 2 cut(s) 1630, 1720
MhlI GDGCHC 2 cut(s) 921, 1539
MlsI TGGCCA 2 cut(s) 548, 1166
MluCI AATT 9 cut(s) 100, 437, 558, 923, 1055, 1176, 1320, 1541, 1610
MluNI TGGCCA 2 cut(s) 548, 1166
MlyI GAGTC 2 cut(s) 581, 1199
MmeI TCCRAC 1 cut(s) 159
Mox20I TGGCCA 2 cut(s) 548, 1166
Mph1103I ATGCAT 2 cut(s) 883, 1501
MscI TGGCCA 2 cut(s) 548, 1166
MseI TTAA 3 cut(s) 956, 1548, 1574
Msp20I TGGCCA 2 cut(s) 548, 1166
MspI CCGG 6 cut(s) 259, 327, 510, 727, 1128, 1345
MspR9I CCNGG 5 cut(s) 8, 845, 1463, 1617, 1683
Mva1269I GAATGC 1 cut(s) 1661
MvaI CCWGG 5 cut(s) 8, 845, 1463, 1617, 1683
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 5 cut(s) 698, 799, 1041, 1316, 1417
NdeII GATC 5 cut(s) 291, 670, 1288, 1630, 1720
NlaIII CATG 4 cut(s) 31, 166, 876, 1494
NlaIV GGNNCC 5 cut(s) 263, 457, 617, 1075, 1622
NmuCI GTSAC 7 cut(s) 235, 390, 410, 866, 1008, 1028, 1484
NsiI ATGCAT 2 cut(s) 883, 1501
NspI RCATGY 2 cut(s) 876, 1494
PagI TCATGA 1 cut(s) 162
PaqCI CACCTGC 2 cut(s) 818, 1436
PciI ACATGT 2 cut(s) 872, 1490
PcsI WCGNNNNNNNCGW 5 cut(s) 141, 153, 315, 375, 993
PctI GAATGC 1 cut(s) 1661
PfeI GAWTC 8 cut(s) 738, 840, 951, 1234, 1356, 1458, 1569, 1737
PflFI GACNNNGTC 1 cut(s) 422
PkrI GCNGC 4 cut(s) 19, 801, 1419, 1729
PleI GAGTC 2 cut(s) 581, 1199
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 2 cut(s) 581, 1199
Ppu21I YACGTR 5 cut(s) 235, 534, 947, 1152, 1565
PpuMI RGGWCCY 1 cut(s) 1621
PscI ACATGT 2 cut(s) 872, 1490
Psp5II RGGWCCY 1 cut(s) 1621
Psp6I CCWGG 5 cut(s) 6, 843, 1461, 1615, 1681
PspCI CACGTG 1 cut(s) 235
PspGI CCWGG 5 cut(s) 6, 843, 1461, 1615, 1681
PspN4I GGNNCC 5 cut(s) 263, 457, 617, 1075, 1622
PspPI GGNCC 2 cut(s) 80, 1621
PspPPI RGGWCCY 1 cut(s) 1621
PsuI RGATCY 2 cut(s) 1630, 1720
PsyI GACNNNGTC 1 cut(s) 422
RsaI GTAC 5 cut(s) 5, 257, 278, 756, 1374
RsaNI GTAC 5 cut(s) 4, 256, 277, 755, 1373
SaqAI TTAA 3 cut(s) 956, 1548, 1574
SatI GCNGC 4 cut(s) 18, 800, 1418, 1728
Sau3AI GATC 5 cut(s) 291, 670, 1288, 1630, 1720
Sau96I GGNCC 2 cut(s) 80, 1621
SchI GAGTC 2 cut(s) 581, 1199
ScrFI CCNGG 5 cut(s) 8, 845, 1463, 1617, 1683
SduI GDGCHC 2 cut(s) 921, 1539
SfaNI GCATC 1 cut(s) 902
SinI GGWCC 2 cut(s) 80, 1621
SmlI CTYRAG 2 cut(s) 480, 1098
SmoI CTYRAG 2 cut(s) 480, 1098
Sse9I AATT 9 cut(s) 100, 437, 558, 923, 1055, 1176, 1320, 1541, 1610
SsiI CCGC 7 cut(s) 39, 184, 298, 343, 355, 662, 1280
SspMI CTAG 5 cut(s) 579, 864, 1197, 1482, 1709
StyD4I CCNGG 5 cut(s) 6, 843, 1461, 1615, 1681
StyI CCWWGG 1 cut(s) 1039
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 6 cut(s) 138, 237, 536, 949, 1154, 1567
TasI AATT 9 cut(s) 100, 437, 558, 923, 1055, 1176, 1320, 1541, 1610
TatI WGTACW 2 cut(s) 754, 1372
TfiI GAWTC 8 cut(s) 738, 840, 951, 1234, 1356, 1458, 1569, 1737
Tru1I TTAA 3 cut(s) 956, 1548, 1574
Tru9I TTAA 3 cut(s) 956, 1548, 1574
TseFI GTSAC 7 cut(s) 235, 390, 410, 866, 1008, 1028, 1484
TseI GCWGC 4 cut(s) 17, 799, 1417, 1727
Tsp45I GTSAC 7 cut(s) 235, 390, 410, 866, 1008, 1028, 1484
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 1733
Tth111I GACNNNGTC 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 80, 1621
XagI CCTNNNNNAGG 2 cut(s) 746, 1364
XapI RAATTY 1 cut(s) 1610
XceI RCATGY 2 cut(s) 876, 1494
XcmI CCANNNNNNNNNTGG 2 cut(s) 428, 1046
XmiI GTMKAC 2 cut(s) 850, 1468
XspI CTAG 5 cut(s) 579, 864, 1197, 1482, 1709
Zsp2I ATGCAT 2 cut(s) 883, 1501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.