AT2G39830

Protein DA1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
16619743 .. 16624150
4408 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39830.4

Sequence Viewer

Length: 1587 bp
ATGGATTCTTCTTCCTCTTCCTCTTCTTCTTCTCCTTCTTCTTCCTACGGTGTTGCTCGTGTCAGCCATATCTCCAATCCTTGCATCTTCGGGGAAGTTGGGTCGTCATCTTCGTCAACGTATAGAGATAAGAAATGGAAGTTGATGAAATGGGTGAGTAAACTTTTCAAGAGTGGCTCGAATGGTGGTGGTAGTGGTGCTCACACTAATCATCATCCTCCTCAGTTTCAAGAAGACGAGAATATGGTCTTTCCTCTACCTCCTTCTTCTTTGGATGATCGGTCAAGAGGTGCACGGGACAAAGAAGAACTCGACCGTTCAATTTCACTTTCTCTAGCTGACAACACGAAGCGCCCACATGGGTATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACGGTGGCTTGAATCCATCATCTTTCATTCCACCTTATGAGCCTTCCTATCAATATAGACGAAGACAAAGAATATGTGGCGGTTGCAATAGCGATATTGGATCGGGGAACTATCTAGGATGCATGGGCACATTCTTTCATCCTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTACTCATCCCAAATGCGAAGTTTGTCACCATTTTATACCAACTAATGATGCTGGCTTGATCGAGTATCGATGCCATCCGTTTTGGAACCAAAAGTATTGCCCGTCTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGAGTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTAGAATGTATGGAAACCGCGATAACCGATACTGGAGAATGTCAACCGCTTTACCACGCTATAAGAGACTATTACGAAGGAATGTACATGAAACTTGATCAACAGATTCCTATGCTTCTTGTTCAAAGAGAAGCTCTCAATGATGCTATCGTAGGAGAGAAAAACGGATACCATCACATGCCTGAGACAAGAGGTTTATGCTTGTCTGAAGAACAAACAGTTACAAGTGTTCTTAGAAGACCGAGACTTGGTGCTCACCGTCTTGTTGGTATGAGAACTCAGCCTCAAAGGCTTACACGCAAATGTGAAGTCACAGCGATTCTAGTTCTTTACGGGCTCCCGCGATTACTGACCGGAGCAATTCTCGCCCATGAGCTCATGCATGGATGGCTAAGGCTTAATGGGTTTAGGAACCTTAACCCTGAGGTAGAGGAAGGAATCTGCCAAGTCCTCTCTTACATGTGGCTTGAATCTGAAGTTCTCTCAGATCCTTCAACAAGAAACTTGCCTTCAACATCATCGGTGGCCACATCATCATCATCATCCTTCTCGAACAAGAAAGGAGGAAAATCAAACGTGGAGAAGAAACTTGGAGAGTTCTTTAAACATCAGATAGCTCATGATGCGTCTCCAGCTTATGGAGGAGGTTTCAGGGCAGCAAATGCAGCGGCTTGTAAGTACGGTCTTCGTCGAACACTCGATCATATCCGCTTAACTGGAACTTTTCCTTTGTGA
Functional Annotation

Protein Analysis

528

Amino Acids

59.43

Weight (kDa)

8.25

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 162 - 216 9.8e-08 LIM domain
DA1-like PF12315 311 - 428 7e-53 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1490
AccII CGCG 2 cut(s) 872, 1195
AciI CCGC 6 cut(s) 489, 870, 899, 1193, 1520, 1561
AclI AACGTT 1 cut(s) 796
AclWI GGATC 2 cut(s) 517, 1334
AcoI YGGCCR 1 cut(s) 1377
AcuI CTGAAG 2 cut(s) 1080, 1347
AfaI GTAC 2 cut(s) 938, 1532
AfiI CCNNNNNNNGG 3 cut(s) 410, 1100, 1490
AflIII ACRYGT 2 cut(s) 825, 1311
AgsI TTSAA 9 cut(s) 169, 230, 321, 421, 643, 977, 1322, 1347, 1365
AluBI AGCT 8 cut(s) 338, 634, 649, 789, 986, 1228, 1469, 1487
AluI AGCT 8 cut(s) 338, 634, 649, 789, 986, 1228, 1469, 1487
Alw21I GWGCWC 4 cut(s) 202, 295, 1108, 1230
Alw26I GTCTC 5 cut(s) 759, 912, 1031, 1090, 1485
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 2 cut(s) 517, 1334
AoxI GGCC 2 cut(s) 401, 1377
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 3 cut(s) 789, 1508, 1517
ArsI GACNNNNNNTTYG 2 cut(s) 1146, 1178
AspLEI GCGC 1 cut(s) 354
AsuHPI GGTGA 3 cut(s) 166, 668, 1100
AxyI CCTNAGG 1 cut(s) 1275
BaeGI GKGCMC 2 cut(s) 295, 539
BalI TGGCCA 1 cut(s) 1379
BanII GRGCYC 2 cut(s) 1191, 1230
BauI CACGAG 1 cut(s) 57
BbsI GAAGAC 4 cut(s) 240, 478, 1096, 1529
Bbv12I GWGCWC 4 cut(s) 202, 295, 1108, 1230
BbvI GCAGC 3 cut(s) 776, 1520, 1529
BccI CCATC 5 cut(s) 433, 732, 830, 1032, 1233
BciVI GTATCC 1 cut(s) 1013
BclI TGATCA 1 cut(s) 949
BcoDI GTCTC 5 cut(s) 759, 912, 1031, 1090, 1485
BfaI CTAG 3 cut(s) 335, 524, 1175
BfoI RGCGCY 1 cut(s) 355
BfuI GTATCC 1 cut(s) 1013
BglI GCCNNNNNGGC 1 cut(s) 1141
BisI GCNGC 4 cut(s) 790, 1509, 1518, 1521
BlsI GCNGC 4 cut(s) 791, 1510, 1519, 1522
BmiI GGNNCC 4 cut(s) 616, 737, 1190, 1265
BmsI GCATC 6 cut(s) 93, 518, 688, 710, 985, 1465
BpiI GAAGAC 4 cut(s) 240, 478, 1096, 1529
BplI GAGNNNNNCTC 4 cut(s) 972, 1004, 1200, 1232
BpmI CTGGAG 2 cut(s) 906, 1467
Bpu10I CCTNAGC 1 cut(s) 1244
Bsa29I ATCGAT 1 cut(s) 718
BsaJI CCNNGG 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 1205
Bsc4I CCNNNNNNNGG 3 cut(s) 410, 1100, 1490
Bse1I ACTGG 2 cut(s) 889, 1573
Bse21I CCTNAGG 1 cut(s) 1275
BseCI ATCGAT 1 cut(s) 718
BseDI CCNNGG 1 cut(s) 398
BseLI CCNNNNNNNGG 3 cut(s) 410, 1100, 1490
BseMII CTCAG 6 cut(s) 236, 582, 1026, 1145, 1266, 1350
BseNI ACTGG 2 cut(s) 889, 1573
BseRI GAGGAG 2 cut(s) 210, 1509
BseSI GKGCMC 2 cut(s) 295, 539
BseXI GCAGC 3 cut(s) 776, 1520, 1529
Bsh1236I CGCG 2 cut(s) 872, 1195
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 2 cut(s) 403, 1379
BshVI ATCGAT 1 cut(s) 718
BsiEI CGRYCG 1 cut(s) 316
BsiHKAI GWGCWC 4 cut(s) 202, 295, 1108, 1230
BsiSI CCGG 1 cut(s) 1206
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 3 cut(s) 410, 1100, 1490
BsmAI GTCTC 5 cut(s) 759, 912, 1031, 1090, 1485
BsmBI CGTCTC 2 cut(s) 759, 1485
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 2 cut(s) 403, 1379
Bsp1286I GDGCHC 6 cut(s) 202, 295, 539, 1108, 1191, 1230
Bsp1407I TGTACA 1 cut(s) 936
Bsp143I GATC 6 cut(s) 277, 509, 708, 949, 1339, 1552
BspACI CCGC 6 cut(s) 489, 870, 899, 1193, 1520, 1561
BspANI GGCC 2 cut(s) 403, 1379
BspCNI CTCAG 6 cut(s) 235, 583, 1027, 1144, 1267, 1349
BspDI ATCGAT 1 cut(s) 718
BspFNI CGCG 2 cut(s) 872, 1195
BspHI TCATGA 1 cut(s) 1471
BspLI GGNNCC 4 cut(s) 616, 737, 1190, 1265
BspPI GGATC 2 cut(s) 517, 1334
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 2 cut(s) 889, 1573
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 6 cut(s) 277, 509, 708, 949, 1339, 1552
BssSI CACGAG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 398
Bst2BI CACGAG 1 cut(s) 57
Bst4CI ACNGT 6 cut(s) 50, 317, 413, 1072, 1112, 1535
Bst6I CTCTTC 2 cut(s) 22, 28
BstAPI GCANNNNNTGC 1 cut(s) 1514
BstAUI TGTACA 1 cut(s) 936
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 8 cut(s) 222, 591, 1035, 1085, 1131, 1244, 1275, 1336
BstFNI CGCG 2 cut(s) 872, 1195
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 6 cut(s) 280, 512, 711, 952, 1342, 1555
BstMAI GTCTC 5 cut(s) 759, 912, 1031, 1090, 1485
BstMBI GATC 6 cut(s) 277, 509, 708, 949, 1339, 1552
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 8 cut(s) 564, 1141, 1217, 1240, 1475, 1484, 1514, 1517
BstNSI RCATGY 2 cut(s) 1033, 1315
BstSLI GKGCMC 2 cut(s) 295, 539
BstUI CGCG 2 cut(s) 872, 1195
BstV1I GCAGC 3 cut(s) 776, 1520, 1529
BstV2I GAAGAC 4 cut(s) 240, 478, 1096, 1529
BstX2I RGATCY 1 cut(s) 1339
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 1 cut(s) 1339
Bsu15I ATCGAT 1 cut(s) 718
Bsu36I CCTNAGG 1 cut(s) 1275
BsuI GTATCC 1 cut(s) 1013
BsuRI GGCC 2 cut(s) 403, 1379
BsuTUI ATCGAT 1 cut(s) 718
BtsIMutI CAGTG 1 cut(s) 588
Cac8I GCNNGC 1 cut(s) 703
CciI TCATGA 1 cut(s) 1471
CfoI GCGC 1 cut(s) 354
ClaI ATCGAT 1 cut(s) 718
CseI GACGC 1 cut(s) 1467
Csp6I GTAC 2 cut(s) 937, 1531
CviQI GTAC 2 cut(s) 937, 1531
DdeI CTNAG 8 cut(s) 222, 591, 1035, 1085, 1131, 1244, 1275, 1336
DpnI GATC 6 cut(s) 279, 511, 710, 951, 1341, 1554
DpnII GATC 6 cut(s) 277, 509, 708, 949, 1339, 1552
DraI TTTAAA 1 cut(s) 1456
EaeI YGGCCR 1 cut(s) 1377
Eam1104I CTCTTC 2 cut(s) 22, 28
EarI CTCTTC 2 cut(s) 22, 28
Ecl136II GAGCTC 1 cut(s) 1228
Eco130I CCWWGG 1 cut(s) 398
Eco147I AGGCCT 1 cut(s) 403
Eco24I GRGCYC 2 cut(s) 1191, 1230
Eco53kI GAGCTC 1 cut(s) 1228
Eco57I CTGAAG 2 cut(s) 1080, 1347
Eco81I CCTNAGG 1 cut(s) 1275
EcoICRI GAGCTC 1 cut(s) 1228
EcoT14I CCWWGG 1 cut(s) 398
EcoT22I ATGCAT 2 cut(s) 533, 1236
EcoT38I GRGCYC 2 cut(s) 1191, 1230
ErhI CCWWGG 1 cut(s) 398
Esp3I CGTCTC 2 cut(s) 759, 1485
FaqI GGGAC 1 cut(s) 311
FauI CCCGC 1 cut(s) 1200
FbaI TGATCA 1 cut(s) 949
Fnu4HI GCNGC 4 cut(s) 790, 1509, 1518, 1521
FriOI GRGCYC 2 cut(s) 1191, 1230
Fsp4HI GCNGC 4 cut(s) 790, 1509, 1518, 1521
FspBI CTAG 3 cut(s) 335, 524, 1175
GlaI GCGC 1 cut(s) 353
GluI GCNGC 4 cut(s) 790, 1509, 1518, 1521
GsuI CTGGAG 2 cut(s) 906, 1467
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 403, 1379
HapII CCGG 1 cut(s) 1206
HgaI GACGC 1 cut(s) 1467
HhaI GCGC 1 cut(s) 354
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 117, 896
HindII GTYRAC 2 cut(s) 117, 896
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 7 cut(s) 5, 421, 803, 958, 1171, 1290, 1322
HpaII CCGG 1 cut(s) 1206
HphI GGTGA 3 cut(s) 166, 668, 1100
Hpy166II GTNNAC 4 cut(s) 117, 161, 293, 896
Hpy188I TCNGA 4 cut(s) 1060, 1327, 1339, 1464
Hpy188III TCNNGA 8 cut(s) 169, 230, 285, 551, 612, 758, 1402, 1472
Hpy8I GTNNAC 4 cut(s) 117, 161, 293, 896
Hpy99I CGWCG 1 cut(s) 1545
HpyAV CCTTC 8 cut(s) 45, 273, 462, 923, 1280, 1353, 1371, 1408
HpyCH4III ACNGT 6 cut(s) 50, 317, 413, 1072, 1112, 1535
HpyCH4IV ACGT 4 cut(s) 119, 796, 827, 1428
HpyCH4V TGCA 6 cut(s) 84, 293, 495, 531, 1234, 1517
HpyF10VI GCNNNNNNNGC 8 cut(s) 564, 1141, 1217, 1240, 1475, 1484, 1514, 1517
HpyF3I CTNAG 8 cut(s) 222, 591, 1035, 1085, 1131, 1244, 1275, 1336
HpySE526I ACGT 4 cut(s) 119, 796, 827, 1428
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 949
Kzo9I GATC 6 cut(s) 277, 509, 708, 949, 1339, 1552
LmnI GCTCC 2 cut(s) 1194, 1208
Lsp1109I GCAGC 3 cut(s) 776, 1520, 1529
LweI GCATC 6 cut(s) 93, 518, 688, 710, 985, 1465
MaeI CTAG 3 cut(s) 335, 524, 1175
MaeII ACGT 4 cut(s) 119, 796, 827, 1428
MaeIII GTNAC 3 cut(s) 674, 1072, 1162
MalI GATC 6 cut(s) 279, 511, 710, 951, 1341, 1554
MboI GATC 6 cut(s) 277, 509, 708, 949, 1339, 1552
MflI RGATCY 1 cut(s) 1339
MhlI GDGCHC 6 cut(s) 202, 295, 539, 1108, 1191, 1230
MlsI TGGCCA 1 cut(s) 1379
MluCI AATT 2 cut(s) 321, 1212
MluNI TGGCCA 1 cut(s) 1379
MlyI GAGTC 1 cut(s) 812
Mox20I TGGCCA 1 cut(s) 1379
Mph1103I ATGCAT 2 cut(s) 533, 1236
MscI TGGCCA 1 cut(s) 1379
MseI TTAA 4 cut(s) 1251, 1269, 1455, 1565
MslI CAYNNNNRTG 4 cut(s) 363, 573, 762, 1153
Msp20I TGGCCA 1 cut(s) 1379
MspA1I CMGCKG 1 cut(s) 1520
MspI CCGG 1 cut(s) 1206
Mva1269I GAATGC 1 cut(s) 560
MvnI CGCG 2 cut(s) 872, 1195
MwoI GCNNNNNNNGC 8 cut(s) 564, 1141, 1217, 1240, 1475, 1484, 1514, 1517
NdeII GATC 6 cut(s) 277, 509, 708, 949, 1339, 1552
NlaIV GGNNCC 4 cut(s) 616, 737, 1190, 1265
NmuCI GTSAC 2 cut(s) 674, 1162
NsiI ATGCAT 2 cut(s) 533, 1236
NspI RCATGY 2 cut(s) 1033, 1315
PagI TCATGA 1 cut(s) 1471
PceI AGGCCT 1 cut(s) 403
PciI ACATGT 1 cut(s) 1311
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 1 cut(s) 560
PfeI GAWTC 6 cut(s) 5, 421, 958, 1171, 1290, 1322
PflMI CCANNNNNTGG 1 cut(s) 1490
PkrI GCNGC 4 cut(s) 791, 1510, 1519, 1522
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
PscI ACATGT 1 cut(s) 1311
Psp124BI GAGCTC 1 cut(s) 1230
Psp1406I AACGTT 1 cut(s) 796
PspN4I GGNNCC 4 cut(s) 616, 737, 1190, 1265
PsuI RGATCY 1 cut(s) 1339
RsaI GTAC 2 cut(s) 938, 1532
RsaNI GTAC 2 cut(s) 937, 1531
RseI CAYNNNNRTG 4 cut(s) 363, 573, 762, 1153
SacI GAGCTC 1 cut(s) 1230
SaqAI TTAA 4 cut(s) 1251, 1269, 1455, 1565
SatI GCNGC 4 cut(s) 790, 1509, 1518, 1521
Sau3AI GATC 6 cut(s) 277, 509, 708, 949, 1339, 1552
SchI GAGTC 1 cut(s) 812
SduI GDGCHC 6 cut(s) 202, 295, 539, 1108, 1191, 1230
SfaNI GCATC 6 cut(s) 93, 518, 688, 710, 985, 1465
SmiMI CAYNNNNRTG 4 cut(s) 363, 573, 762, 1153
Sse9I AATT 2 cut(s) 321, 1212
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 6 cut(s) 489, 870, 899, 1193, 1520, 1561
SspMI CTAG 3 cut(s) 335, 524, 1175
SstI GAGCTC 1 cut(s) 1230
StuI AGGCCT 1 cut(s) 403
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 6 cut(s) 50, 317, 413, 1072, 1112, 1535
TaiI ACGT 4 cut(s) 122, 799, 830, 1431
TaqI TCGA 7 cut(s) 179, 312, 711, 718, 1403, 1543, 1551
TaqII GACCGA 2 cut(s) 270, 1108
TasI AATT 2 cut(s) 321, 1212
TatI WGTACW 1 cut(s) 936
TauI GCSGC 1 cut(s) 1523
TfiI GAWTC 6 cut(s) 5, 421, 958, 1171, 1290, 1322
Tru1I TTAA 4 cut(s) 1251, 1269, 1455, 1565
Tru9I TTAA 4 cut(s) 1251, 1269, 1455, 1565
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 2 cut(s) 674, 1162
TseI GCWGC 3 cut(s) 789, 1508, 1517
Tsp45I GTSAC 2 cut(s) 674, 1162
TspDTI ATGAA 4 cut(s) 161, 424, 536, 956
TspGWI ACGGA 3 cut(s) 551, 717, 1032
TspRI CASTG 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 1490
VneI GTGCAC 1 cut(s) 291
XceI RCATGY 2 cut(s) 1033, 1315
XspI CTAG 3 cut(s) 335, 524, 1175
Zsp2I ATGCAT 2 cut(s) 533, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.