Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002660

Physical Location & Seq

Genomic Coordinates Reverse (-)

46213182 .. 46215671

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0344100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGTGCTTTTTCAAAGGTGCGAATGAGGACTTGACGCCTTCTCCGGTAGACATTCTTAGGTGTCCATTTTTGAGGAACATTAATGAGCCCACCAATTTTTCCTTCTCCTCCATGTCCTCCATGGCTTTCCCGATGCCGGTACGTGCAGCCAGCAAAGGTCCAATTTTTGAAGATGGTCCTAATTTTGACATGGCATTTAAGCTTTTCCATGGGAGTGATGGAGTAGTCCCTCTTTCTGGACGATCATTTGAGCATTCTGAGAAAGTTGAGCATCAACCAGCCCCATGCATGTTTAATCCATTAGCTGCAAAGGCAGCTACTATCAGTCTCTCATCCTTTGGACCTGGAGGACCTTTCGGCTTTGATGCATTCTCTGAGAAGTGGAAGAAAATGCAAAAGAAGTCTAATTCCTCGAAAAAGGGGTCTTCTTCGAAGGGAGGAAACTCTAATCACGAGGCAGCAAGTAACGAGTGGCTGCAAAGTGGAAACTGTCCGATTGCAAAGTCATTCCGTGCTGTTAGTGGTGTCATTCCACTTGTTGCAAAGGCTTTGCAGCTCCCTCCAGGCATGAAAGTTAAGTGCCCACCAGCAATAGTTGCAGCGCGAGCAGCTCTGGCAAAAACTGCATTTGCAAAGAACCTCCGCCCACAACCCCTGCCTGCAAAAGTGCTTGTGATTGGAGCACTGGGAATGGCAGCCAATGTTCCTTTAGGGATATGGAGAGAGCACACCAAGAAATTTTCCCCATCTTGGTTTGCTGCTGTGCATGCAGCTGTTCCATTCATAGCGGTACTTCGAAAGTCTGTGTTGATGCCTAAGTCGGCTATGGCGTTTACCATTGCAGCATCTATATTAGGACAGGTGATTGGGTCTAGAGCAGAGCGCTACCGTCTGAAGGCAAAGGCAGCTAAAAACTCGGCTTTGACTGAAACCTCTGTTCAGATCAAGAAGACTGAAACCTCTGTCGGTGGGATGAAAAGCCAGTTCCAGGTTGTTGAAGCGAAATCTGGTCATTGCACTGAGATTGAGGAGTGGAATTCAGTTGCTCTGCAGGTCTCACGCCCTTCTTCGTCAACCGATGTGTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0022622 GO:0032182 GO:0032501 GO:0032502 GO:0043130 GO:0048364 GO:0048731 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

364

Amino Acids

38.96

Weight (kDa)

9.77

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39830 AT2G39830 AT2G39830 AT2G39830
fragaria_vesca	FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550
malus_domestica	MD01G1141300.v1.1 MD07G1205300.v1.1 MD07G1205400.v1.1
prunus_persica	Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1
pyrus_communis	pycom01g16160 pycom07g19190 pycom07g19200
rosa_chinensis	RchiOBHm_Chr1g0368711
rosa_laevigata	RLG00000027195
rosa_multiflora	Rmu_sc0001791.1_g000014 Rmu_sc0001791.1_g000015
rosa_roxburghii	Rroxscaffold_4G00288340
rosa_rugosa	Rorug01G0343900 Rorug01G0343900 Rorug01G0344000 Rorug01G0344000 Rorug01G0344100 Rorug01G0344100 Rorug01G0344100 Rorug01G0344100
rosa_samantha	Rh1AG351400 Rh1BG315100 Rh1CG329700 Rh1DG346600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1045
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	607
AciI	CCGC	2 cut(s)	646, 791
AcsI	RAATTY	2 cut(s)	740, 1039
AcuI	CTGAAG	1 cut(s)	917
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	144, 795
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	5 cut(s)	139, 239, 753, 898, 991
AgsI	TTSAA	3 cut(s)	16, 173, 1001
AjnI	CCWGG	3 cut(s)	346, 565, 990
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	7 cut(s)	205, 308, 320, 559, 614, 776, 911
AluI	AGCT	7 cut(s)	205, 308, 320, 559, 614, 776, 911
Alw21I	GWGCWC	2 cut(s)	688, 732
Alw26I	GTCTC	2 cut(s)	335, 1063
Aor51HI	AGCGCT	1 cut(s)	887
ApoI	RAATTY	2 cut(s)	740, 1039
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AseI	ATTAAT	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	607, 888
AspS9I	GGNCC	4 cut(s)	161, 179, 344, 353
AsuHPI	GGTGA	1 cut(s)	877
AsuII	TTCGAA	2 cut(s)	434, 799
AvaII	GGWCC	4 cut(s)	161, 179, 344, 353
BaeGI	GKGCMC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	455
BbsI	GAAGAC	2 cut(s)	420, 959
Bbv12I	GWGCWC	2 cut(s)	688, 732
BccI	CCATC	3 cut(s)	170, 215, 757
BciT130I	CCWGG	3 cut(s)	348, 567, 992
BcoDI	GTCTC	2 cut(s)	335, 1063
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	1 cut(s)	1052
BfoI	RGCGCY	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	1045
Bme1390I	CCNGG	3 cut(s)	348, 567, 992
Bme18I	GGWCC	4 cut(s)	161, 179, 344, 353
BmgT120I	GGNCC	4 cut(s)	161, 179, 344, 353
BmrFI	CCNGG	3 cut(s)	348, 567, 992
BmrI	ACTGGG	1 cut(s)	698
BmsI	GCATC	5 cut(s)	126, 283, 358, 804, 857
BmuI	ACTGGG	1 cut(s)	698
BpiI	GAAGAC	2 cut(s)	420, 959
BpmI	CTGGAG	2 cut(s)	369, 549
Bpu14I	TTCGAA	2 cut(s)	434, 799
BsaAI	YACGTR	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	1063
BsaJI	CCNNGG	2 cut(s)	123, 211
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 239, 753, 898, 991
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	693, 985
Bse3DI	GCAATG	2 cut(s)	840, 1015
BseBI	CCWGG	3 cut(s)	348, 567, 992
BseDI	CCNNGG	2 cut(s)	123, 211
BseGI	GGATG	2 cut(s)	335, 981
BseLI	CCNNNNNNNGG	5 cut(s)	139, 239, 753, 898, 991
BseMI	GCAATG	2 cut(s)	840, 1015
BseMII	CTCAG	3 cut(s)	252, 369, 1014
BseNI	ACTGG	2 cut(s)	693, 985
BseRI	GAGGAG	2 cut(s)	100, 1046
BseSI	GKGCMC	1 cut(s)	587
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	607
BsiHKAI	GWGCWC	2 cut(s)	688, 732
BsiSI	CCGG	2 cut(s)	47, 140
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	5 cut(s)	139, 239, 753, 898, 991
BsmAI	GTCTC	2 cut(s)	335, 1063
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	2 cut(s)	256, 371
Bso31I	GGTCTC	1 cut(s)	1063
Bsp119I	TTCGAA	2 cut(s)	434, 799
Bsp1286I	GDGCHC	4 cut(s)	93, 587, 688, 732
Bsp143I	GATC	2 cut(s)	245, 945
Bsp19I	CCATGG	2 cut(s)	123, 211
BspACI	CCGC	2 cut(s)	646, 791
BspCNI	CTCAG	3 cut(s)	253, 370, 1015
BspFNI	CGCG	1 cut(s)	607
BspMAI	CTGCAG	1 cut(s)	1056
BspMI	ACCTGC	1 cut(s)	1045
BspT104I	TTCGAA	2 cut(s)	434, 799
BspTNI	GGTCTC	1 cut(s)	1063
BsrDI	GCAATG	2 cut(s)	840, 1015
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	693, 985
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	123, 211
BssMI	GATC	2 cut(s)	245, 945
BssNI	GRCGYC	1 cut(s)	38
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	2 cut(s)	123, 211
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	3 cut(s)	348, 567, 992
Bst4CI	ACNGT	2 cut(s)	494, 893
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	2 cut(s)	599, 626
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	2 cut(s)	434, 799
BstC8I	GCNNGC	4 cut(s)	154, 609, 663, 771
BstDEI	CTNAG	5 cut(s)	59, 261, 378, 819, 1023
BstDSI	CCRYGG	2 cut(s)	123, 211
BstF5I	GGATG	2 cut(s)	335, 981
BstFNI	CGCG	1 cut(s)	607
BstH2I	RGCGCY	1 cut(s)	889
BstHHI	GCGC	2 cut(s)	607, 888
BstKTI	GATC	2 cut(s)	248, 948
BstMAI	GTCTC	2 cut(s)	335, 1063
BstMBI	GATC	2 cut(s)	245, 945
BstMWI	GCNNNNNNNGC	9 cut(s)	314, 317, 599, 608, 611, 617, 626, 770, 908
BstNI	CCWGG	3 cut(s)	348, 567, 992
BstNSI	RCATGY	2 cut(s)	295, 773
BstSCI	CCNGG	3 cut(s)	346, 565, 990
BstSFI	CTRYAG	1 cut(s)	1052
BstSLI	GKGCMC	1 cut(s)	587
BstUI	CGCG	1 cut(s)	607
BstV2I	GAAGAC	2 cut(s)	420, 959
BtgI	CCRYGG	2 cut(s)	123, 211
BtsCI	GGATG	2 cut(s)	335, 981
BtsIMutI	CAGTG	2 cut(s)	686, 1020
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	4 cut(s)	154, 609, 663, 771
CfoI	GCGC	2 cut(s)	607, 888
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	4 cut(s)	161, 179, 344, 353
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	143, 794
CviAII	CATG	8 cut(s)	115, 124, 193, 212, 288, 292, 571, 770
CviQI	GTAC	2 cut(s)	143, 794
DdeI	CTNAG	5 cut(s)	59, 261, 378, 819, 1023
DpnI	GATC	2 cut(s)	247, 947
DpnII	GATC	2 cut(s)	245, 945
EciI	GGCGGA	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	123, 211
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	1063
Eco47I	GGWCC	4 cut(s)	161, 179, 344, 353
Eco47III	AGCGCT	1 cut(s)	887
Eco57I	CTGAAG	1 cut(s)	917
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	1039
EcoRII	CCWGG	3 cut(s)	346, 565, 990
EcoT14I	CCWWGG	2 cut(s)	123, 211
EcoT22I	ATGCAT	2 cut(s)	293, 373
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	123, 211
FaeI	CATG	8 cut(s)	118, 127, 196, 215, 291, 295, 574, 773
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	8 cut(s)	114, 123, 192, 211, 287, 291, 570, 769
FblI	GTMKAC	1 cut(s)	51
FokI	GGATG	2 cut(s)	322, 988
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	2 cut(s)	606, 887
GsuI	CTGGAG	2 cut(s)	369, 549
HaeII	RGCGCY	1 cut(s)	889
HapII	CCGG	2 cut(s)	47, 140
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	2 cut(s)	607, 888
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	8 cut(s)	118, 127, 196, 215, 291, 295, 574, 773
Hin6I	GCGC	2 cut(s)	605, 886
HinP1I	GCGC	2 cut(s)	605, 886
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HindIII	AAGCTT	1 cut(s)	203
HpaII	CCGG	2 cut(s)	47, 140
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	3 cut(s)	52, 837, 1077
Hpy188I	TCNGA	5 cut(s)	262, 379, 498, 897, 945
Hpy188III	TCNNGA	5 cut(s)	133, 240, 455, 876, 949
Hpy8I	GTNNAC	3 cut(s)	52, 837, 1077
HpyAV	CCTTC	5 cut(s)	51, 115, 430, 892, 1077
HpyCH4III	ACNGT	2 cut(s)	494, 893
HpyCH4IV	ACGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	9 cut(s)	314, 317, 599, 608, 611, 617, 626, 770, 908
HpyF3I	CTNAG	5 cut(s)	59, 261, 378, 819, 1023
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	8 cut(s)	118, 127, 196, 215, 291, 295, 574, 773
HspAI	GCGC	2 cut(s)	605, 886
Kzo9I	GATC	2 cut(s)	245, 945
LmnI	GCTCC	2 cut(s)	564, 683
LweI	GCATC	5 cut(s)	126, 283, 358, 804, 857
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	2 cut(s)	247, 947
MboI	GATC	2 cut(s)	245, 945
MboII	GAAGA	6 cut(s)	185, 400, 420, 423, 964, 1062
MhlI	GDGCHC	4 cut(s)	93, 587, 688, 732
MluCI	AATT	6 cut(s)	97, 165, 184, 409, 740, 1039
Mph1103I	ATGCAT	2 cut(s)	293, 373
MseI	TTAA	4 cut(s)	84, 201, 297, 579
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	2 cut(s)	47, 140
MspR9I	CCNGG	3 cut(s)	348, 567, 992
Mva1269I	GAATGC	2 cut(s)	256, 371
MvaI	CCWGG	3 cut(s)	348, 567, 992
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	9 cut(s)	314, 317, 599, 608, 611, 617, 626, 770, 908
NcoI	CCATGG	2 cut(s)	123, 211
NdeII	GATC	2 cut(s)	245, 945
NlaIII	CATG	8 cut(s)	118, 127, 196, 215, 291, 295, 574, 773
NmeAIII	GCCGAG	1 cut(s)	899
NsiI	ATGCAT	2 cut(s)	293, 373
NspI	RCATGY	2 cut(s)	295, 773
NspV	TTCGAA	2 cut(s)	434, 799
PaeI	GCATGC	1 cut(s)	773
PcsI	WCGNNNNNNNCGW	1 cut(s)	830
PctI	GAATGC	2 cut(s)	256, 371
Ppu21I	YACGTR	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	353
PshBI	ATTAAT	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	3 cut(s)	346, 565, 990
PspGI	CCWGG	3 cut(s)	346, 565, 990
PspPI	GGNCC	4 cut(s)	161, 179, 344, 353
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	1056
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	144, 795
RsaNI	GTAC	2 cut(s)	143, 794
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	84, 201, 297, 579
Sau3AI	GATC	2 cut(s)	245, 945
Sau96I	GGNCC	4 cut(s)	161, 179, 344, 353
ScrFI	CCNGG	3 cut(s)	348, 567, 992
SduI	GDGCHC	4 cut(s)	93, 587, 688, 732
SfaNI	GCATC	5 cut(s)	126, 283, 358, 804, 857
SfcI	CTRYAG	1 cut(s)	1052
SfuI	TTCGAA	2 cut(s)	434, 799
SinI	GGWCC	4 cut(s)	161, 179, 344, 353
SmiMI	CAYNNNNRTG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	773
Sse9I	AATT	6 cut(s)	97, 165, 184, 409, 740, 1039
SsiI	CCGC	2 cut(s)	646, 791
SspMI	CTAG	1 cut(s)	876
StyD4I	CCNGG	3 cut(s)	346, 565, 990
StyI	CCWWGG	2 cut(s)	123, 211
TaaI	ACNGT	2 cut(s)	494, 893
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	416, 434, 799
TasI	AATT	6 cut(s)	97, 165, 184, 409, 740, 1039
Tru1I	TTAA	4 cut(s)	84, 201, 297, 579
Tru9I	TTAA	4 cut(s)	84, 201, 297, 579
TscAI	CASTG	2 cut(s)	693, 1027
TspDTI	ATGAA	3 cut(s)	587, 775, 992
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	693, 1027
VpaK11BI	GGWCC	4 cut(s)	161, 179, 344, 353
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	2 cut(s)	740, 1039
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	2 cut(s)	295, 773
XcmI	CCANNNNNNNNNTGG	2 cut(s)	121, 218
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	876
Zsp2I	ATGCAT	2 cut(s)	293, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.