Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002660

Physical Location & Seq

Genomic Coordinates Forward (+)

21514378 .. 21516168

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19190.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGGACTTTCTTTCATCCCCAGTGCTTCTGTTGTCGTTCTTGTGGCCGTCCGATTGTTGAGAATGAGTTTTCTTCGTCAGGGAGGGATCCATATCACAAGTCCTGCTTTAAAGAACTGGCTCATCCCAAGTGTGAAGTTTGCCATCAATTTATTCCAACAAATCGAGCTGGTTTGATCGAGTACAGATGCCATCCGTTTTGGTCACAAAAGTACCGTCCAGCACATGAACAGGATAACACATCTCGTTGCTGCAGTTGCGAACGCTTAGAGTCTTGGGATGCAAGGTACGTTTCATTGGGGGACGGGCGAAGTCTATGCTTCGAGTGCATGGAATCTGCTATCATGGACACCGGTGACAGTCAGACTCTATATCACGCCATACGAGACTACTTTGAAGGGATGAACATGCAATTGGATCAGCAAATACCCATGCTTCTGGTCGAAAGACAAGGTCTAAAAGAAGCTATTGTAGGCGAAAAGAGTGGCCCCCATCACATGCCCGAGACGAGGGGTTTATGCCTTTTGGAAGAGCAGACTGTCACCAGTATCATCAAAAGGCCGAGAATTAGGGGGCATCAATATATTGGAATGAGAACCCAACCTCAGAAATTGACTCGAAAATGTGAAGTTACTGCCATTCTTGTTCTCTATGGCTTCCCAAGGTTACTAACAGGTGCCATTCTTGCCCATGAATTGATGCACGGCTTGTTACACCTCAAAGGGTACCAGAATCTTAATCCCGAGGTAGAGAAAGGCATCTGCCAGGTGCTTTCGTACATGTGGCTTGAGTCGGAAGTAATGCCGCGATTCAAAAACATGCCATCTTCATCTACATTTACATCCGCAGCTTCCTCTTCCTCTTCCACGTTTTCATCAAAAAAAGGTGGAAAATCGAAAATTGAACAAAAACTAGGGGAGTTTTTCATGCACCAAATCGCCAACGATTCTTCACCTGCATATGGAGGAGGGTTTCGAGCAGCTAATGCAGCTGTCAACAAGTATGGTTTGCGTCGTACATTGGATTACATTCGCCTCACCGGAAACTTCCCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0022622 GO:0032182 GO:0032501 GO:0032502 GO:0043130 GO:0048364 GO:0048731 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

353

Amino Acids

39.95

Weight (kDa)

8.63

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39830 AT2G39830 AT2G39830 AT2G39830
fragaria_vesca	FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550
malus_domestica	MD01G1141300.v1.1 MD07G1205300.v1.1 MD07G1205400.v1.1
prunus_persica	Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1
pyrus_communis	pycom01g16160 pycom07g19190 pycom07g19200
rosa_chinensis	RchiOBHm_Chr1g0368711
rosa_laevigata	RLG00000027195
rosa_multiflora	Rmu_sc0001791.1_g000014 Rmu_sc0001791.1_g000015
rosa_roxburghii	Rroxscaffold_4G00288340
rosa_rugosa	Rorug01G0343900 Rorug01G0343900 Rorug01G0344000 Rorug01G0344000 Rorug01G0344100 Rorug01G0344100 Rorug01G0344100 Rorug01G0344100
rosa_samantha	Rh1AG351400 Rh1BG315100 Rh1CG329700 Rh1DG346600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	964
Acc36I	ACCTGC	1 cut(s)	964
Acc65I	GGTACC	1 cut(s)	726
AccB1I	GGYRCC	2 cut(s)	677, 726
AccII	CGCG	1 cut(s)	808
AciI	CCGC	2 cut(s)	806, 846
AclWI	GGATC	3 cut(s)	83, 96, 426
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	6 cut(s)	185, 215, 290, 728, 779, 1018
AfiI	CCNNNNNNNGG	2 cut(s)	510, 962
AflIII	ACRYGT	1 cut(s)	780
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	398, 814, 905
AjnI	CCWGG	1 cut(s)	765
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	170, 467, 851, 983, 992
AluI	AGCT	5 cut(s)	170, 467, 851, 983, 992
Alw26I	GTCTC	2 cut(s)	381, 500
AlwI	GGATC	3 cut(s)	83, 96, 426
Ama87I	CYCGRG	2 cut(s)	503, 743
AoxI	GGCC	3 cut(s)	46, 487, 560
ApeKI	GCWGC	4 cut(s)	252, 848, 980, 989
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AsiGI	ACCGGT	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	4 cut(s)	368, 535, 945, 1030
AvaI	CYCGRG	2 cut(s)	503, 743
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BamHI	GGATCC	1 cut(s)	88
BanI	GGYRCC	2 cut(s)	677, 726
BbvI	GCAGC	4 cut(s)	239, 860, 992, 1001
BccI	CCATC	4 cut(s)	153, 201, 501, 832
BceAI	ACGGC	2 cut(s)	33, 721
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BciT130I	CCWGG	1 cut(s)	767
BcoDI	GTCTC	2 cut(s)	381, 500
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	964
BisI	GCNGC	5 cut(s)	253, 806, 849, 981, 990
BlsI	GCNGC	5 cut(s)	254, 807, 850, 982, 991
Bme1390I	CCNGG	1 cut(s)	767
BmeT110I	CYCGRG	2 cut(s)	503, 743
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	4 cut(s)	90, 490, 679, 728
BmrFI	CCNGG	1 cut(s)	767
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	5 cut(s)	179, 271, 586, 690, 768
BmuI	ACTGGG	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	662, 744
BsaWI	WCCGGW	2 cut(s)	353, 1040
Bsc4I	CCNNNNNNNGG	2 cut(s)	510, 962
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	22, 123, 546
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	2 cut(s)	662, 744
BseGI	GGATG	6 cut(s)	16, 124, 193, 286, 408, 842
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	510, 962
BseMII	CTCAG	1 cut(s)	620
BseNI	ACTGG	3 cut(s)	22, 123, 546
BseRI	GAGGAG	1 cut(s)	981
BseXI	GCAGC	4 cut(s)	239, 860, 992, 1001
Bsh1236I	CGCG	1 cut(s)	808
BshFI	GGCC	3 cut(s)	48, 489, 562
BshNI	GGYRCC	2 cut(s)	677, 726
BshTI	ACCGGT	1 cut(s)	353
BsiHKCI	CYCGRG	2 cut(s)	503, 743
BsiSI	CCGG	2 cut(s)	354, 1041
BslFI	GGGAC	2 cut(s)	19, 317
BslI	CCNNNNNNNGG	2 cut(s)	510, 962
BsmAI	GTCTC	2 cut(s)	381, 500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	2 cut(s)	19, 317
BsnI	GGCC	3 cut(s)	48, 489, 562
BsoBI	CYCGRG	2 cut(s)	503, 743
Bsp143I	GATC	3 cut(s)	88, 177, 418
BspACI	CCGC	2 cut(s)	806, 846
BspANI	GGCC	3 cut(s)	48, 489, 562
BspCNI	CTCAG	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	808
BspLI	GGNNCC	4 cut(s)	90, 490, 679, 728
BspMAI	CTGCAG	1 cut(s)	257
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	3 cut(s)	83, 96, 426
BspQI	GCTCTTC	1 cut(s)	525
BspT107I	GGYRCC	2 cut(s)	677, 726
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	22, 123, 546
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	662, 744
BssMI	GATC	3 cut(s)	88, 177, 418
BssT1I	CCWWGG	1 cut(s)	662
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	3 cut(s)	218, 362, 541
Bst6I	CTCTTC	3 cut(s)	525, 862, 868
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstDEI	CTNAG	2 cut(s)	268, 606
BstF5I	GGATG	6 cut(s)	16, 124, 193, 286, 408, 842
BstFNI	CGCG	1 cut(s)	808
BstKTI	GATC	3 cut(s)	91, 180, 421
BstMAI	GTCTC	2 cut(s)	381, 500
BstMBI	GATC	3 cut(s)	88, 177, 418
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 327, 686, 986, 989
BstNI	CCWGG	1 cut(s)	767
BstNSI	RCATGY	4 cut(s)	412, 502, 784, 823
BstSCI	CCNGG	1 cut(s)	765
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	808
BstV1I	GCAGC	4 cut(s)	239, 860, 992, 1001
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	48, 489, 562
BtsCI	GGATG	6 cut(s)	16, 124, 193, 286, 408, 842
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	964
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	488
CseI	GACGC	1 cut(s)	1001
Csp6I	GTAC	6 cut(s)	184, 214, 289, 727, 778, 1017
CspAI	ACCGGT	1 cut(s)	353
CviQI	GTAC	6 cut(s)	184, 214, 289, 727, 778, 1017
DdeI	CTNAG	2 cut(s)	268, 606
DpnI	GATC	3 cut(s)	90, 179, 420
DpnII	GATC	3 cut(s)	88, 177, 418
DraI	TTTAAA	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	3 cut(s)	525, 862, 868
EarI	CTCTTC	3 cut(s)	525, 862, 868
Eco130I	CCWWGG	1 cut(s)	662
Eco88I	CYCGRG	2 cut(s)	503, 743
EcoRII	CCWGG	1 cut(s)	765
EcoT14I	CCWWGG	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	662
Esp3I	CGTCTC	1 cut(s)	500
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	19, 317
FauNDI	CATATG	1 cut(s)	961
Fnu4HI	GCNGC	5 cut(s)	253, 806, 849, 981, 990
FokI	GGATG	6 cut(s)	3, 111, 180, 293, 415, 829
Fsp4HI	GCNGC	5 cut(s)	253, 806, 849, 981, 990
FspBI	CTAG	1 cut(s)	914
GluI	GCNGC	5 cut(s)	253, 806, 849, 981, 990
HaeIII	GGCC	3 cut(s)	48, 489, 562
HapII	CCGG	2 cut(s)	354, 1041
HgaI	GACGC	1 cut(s)	1001
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	8 cut(s)	272, 335, 367, 616, 733, 791, 810, 947
HpaII	CCGG	2 cut(s)	354, 1041
HphI	GGTGA	4 cut(s)	368, 535, 945, 1030
Hpy166II	GTNNAC	1 cut(s)	997
Hpy188I	TCNGA	4 cut(s)	54, 366, 609, 796
Hpy188III	TCNNGA	1 cut(s)	743
Hpy8I	GTNNAC	1 cut(s)	997
Hpy99I	CGWCG	1 cut(s)	1017
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	3 cut(s)	218, 362, 541
HpyCH4IV	ACGT	2 cut(s)	291, 869
HpyCH4V	TGCA	8 cut(s)	255, 284, 330, 412, 703, 931, 959, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 327, 686, 986, 989
HpyF3I	CTNAG	2 cut(s)	268, 606
HpySE526I	ACGT	2 cut(s)	291, 869
KpnI	GGTACC	1 cut(s)	730
Kzo9I	GATC	3 cut(s)	88, 177, 418
LguI	GCTCTTC	1 cut(s)	525
Lsp1109I	GCAGC	4 cut(s)	239, 860, 992, 1001
LweI	GCATC	5 cut(s)	179, 271, 586, 690, 768
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	2 cut(s)	291, 869
MaeIII	GTNAC	6 cut(s)	204, 356, 541, 631, 666, 711
MalI	GATC	3 cut(s)	90, 179, 420
MboI	GATC	3 cut(s)	88, 177, 418
MboII	GAAGA	6 cut(s)	66, 542, 819, 849, 855, 942
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	6 cut(s)	149, 413, 567, 611, 695, 900
MlyI	GAGTC	4 cut(s)	281, 361, 610, 800
MmeI	TCCRAC	2 cut(s)	182, 774
MseI	TTAA	2 cut(s)	111, 738
MspA1I	CMGCKG	1 cut(s)	992
MspI	CCGG	2 cut(s)	354, 1041
MspR9I	CCNGG	1 cut(s)	767
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	1 cut(s)	808
MwoI	GCNNNNNNNGC	5 cut(s)	258, 327, 686, 986, 989
NdeI	CATATG	1 cut(s)	961
NdeII	GATC	3 cut(s)	88, 177, 418
NlaIV	GGNNCC	4 cut(s)	90, 490, 679, 728
NmeAIII	GCCGAG	1 cut(s)	588
NmuCI	GTSAC	3 cut(s)	204, 356, 541
NspI	RCATGY	4 cut(s)	412, 502, 784, 823
PaqCI	CACCTGC	1 cut(s)	964
PciI	ACATGT	1 cut(s)	780
PciSI	GCTCTTC	1 cut(s)	525
PfeI	GAWTC	4 cut(s)	335, 733, 810, 947
PflFI	GACNNNGTC	1 cut(s)	453
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	254, 807, 850, 982, 991
PleI	GAGTC	4 cut(s)	280, 361, 610, 799
PpsI	GAGTC	4 cut(s)	280, 361, 610, 799
PscI	ACATGT	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	4 cut(s)	90, 490, 679, 728
PspPI	GGNCC	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	6 cut(s)	185, 215, 290, 728, 779, 1018
RsaNI	GTAC	6 cut(s)	184, 214, 289, 727, 778, 1017
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	111, 738
SatI	GCNGC	5 cut(s)	253, 806, 849, 981, 990
Sau3AI	GATC	3 cut(s)	88, 177, 418
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	4 cut(s)	281, 361, 610, 800
ScrFI	CCNGG	1 cut(s)	767
SfaNI	GCATC	5 cut(s)	179, 271, 586, 690, 768
SfcI	CTRYAG	1 cut(s)	253
SgrAI	CRCCGGYG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	6 cut(s)	149, 413, 567, 611, 695, 900
SsiI	CCGC	2 cut(s)	806, 846
SspMI	CTAG	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	765
StyI	CCWWGG	1 cut(s)	662
TaaI	ACNGT	3 cut(s)	218, 362, 541
TaiI	ACGT	2 cut(s)	294, 872
TaqI	TCGA	7 cut(s)	166, 180, 324, 444, 619, 896, 976
TasI	AATT	6 cut(s)	149, 413, 567, 611, 695, 900
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	808
TfiI	GAWTC	4 cut(s)	335, 733, 810, 947
Tru1I	TTAA	2 cut(s)	111, 738
Tru9I	TTAA	2 cut(s)	111, 738
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	3 cut(s)	204, 356, 541
TseI	GCWGC	4 cut(s)	252, 848, 980, 989
Tsp45I	GTSAC	3 cut(s)	204, 356, 541
TspDTI	ATGAA	8 cut(s)	5, 243, 285, 419, 708, 819, 864, 916
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	453
XceI	RCATGY	4 cut(s)	412, 502, 784, 823
XspI	CTAG	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.