DA1-related
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39830 AT2G39830 AT2G39830 AT2G39830 |
| fragaria_vesca | FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 |
| malus_domestica | MD01G1141300.v1.1 MD07G1205300.v1.1 MD07G1205400.v1.1 |
| prunus_persica | Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 |
| pyrus_communis | pycom01g16160 pycom07g19190 pycom07g19200 |
| rosa_chinensis | RchiOBHm_Chr1g0368711 |
| rosa_laevigata | RLG00000027195 |
| rosa_multiflora | Rmu_sc0001791.1_g000014 Rmu_sc0001791.1_g000015 |
| rosa_roxburghii | Rroxscaffold_4G00288340 |
| rosa_rugosa | Rorug01G0343900 Rorug01G0343900 Rorug01G0344000 Rorug01G0344000 Rorug01G0344100 Rorug01G0344100 Rorug01G0344100 Rorug01G0344100 |
| rosa_samantha | Rh1AG351400 Rh1BG315100 Rh1CG329700 Rh1DG346600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 333, 1158 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 165 |
| AatII | GACGTC | 1 cut(s) | 2070 |
| Acc16I | TGCGCA | 2 cut(s) | 1740, 4269 |
| Acc36I | ACCTGC | 1 cut(s) | 2840 |
| Acc65I | GGTACC | 1 cut(s) | 2148 |
| AccB1I | GGYRCC | 2 cut(s) | 2148, 4820 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 170, 815 |
| AccII | CGCG | 3 cut(s) | 88, 113, 2175 |
| AciI | CCGC | 9 cut(s) | 5, 133, 144, 161, 461, 1996, 2131, 2444, 4479 |
| AcoI | YGGCCR | 4 cut(s) | 269, 547, 945, 4623 |
| AcuI | CTGAAG | 9 cut(s) | 726, 1094, 1358, 3288, 3405, 3822, 4194, 4205, 4535 |
| AcvI | CACGTG | 2 cut(s) | 284, 632 |
| AcyI | GRCGYC | 2 cut(s) | 2067, 4509 |
| AdeI | CACNNNGTG | 2 cut(s) | 2768, 3125 |
| AfaI | GTAC | 7 cut(s) | 1234, 2150, 2707, 3201, 4179, 4593, 4643 |
| AflIII | ACRYGT | 2 cut(s) | 192, 3008 |
| AgeI | ACCGGT | 1 cut(s) | 79 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3559 |
| AhlI | ACTAGT | 2 cut(s) | 2897, 2956 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 511, 543 |
| Alw21I | GWGCWC | 2 cut(s) | 482, 2250 |
| Alw26I | GTCTC | 7 cut(s) | 384, 741, 782, 1234, 2868, 2999, 3383 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2834, 3575, 3614, 4997 |
| Ama87I | CYCGRG | 2 cut(s) | 337, 392 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 689, 721, 1859, 1891, 2080, 2112, 3382, 3414 |
| AseI | ATTAAT | 1 cut(s) | 3396 |
| AsiGI | ACCGGT | 1 cut(s) | 79 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 35, 4186, 4364 |
| Asp718I | GGTACC | 1 cut(s) | 2148 |
| AspLEI | GCGC | 6 cut(s) | 88, 115, 1741, 2177, 4270, 4287 |
| AsuC2I | CCSGG | 3 cut(s) | 393, 394, 2927 |
| AsuII | TTCGAA | 1 cut(s) | 662 |
| AvaI | CYCGRG | 2 cut(s) | 337, 392 |
| AvaII | GGWCC | 6 cut(s) | 77, 234, 1100, 1663, 3138, 4431 |
| AxyI | CCTNAGG | 2 cut(s) | 429, 3510 |
| BaeGI | GKGCMC | 1 cut(s) | 4152 |
| BalI | TGGCCA | 1 cut(s) | 549 |
| BamHI | GGATCC | 1 cut(s) | 3037 |
| BanI | GGYRCC | 2 cut(s) | 2148, 4820 |
| BanII | GRGCYC | 1 cut(s) | 581 |
| BauI | CACGAG | 1 cut(s) | 56 |
| BbrPI | CACGTG | 2 cut(s) | 284, 632 |
| BbsI | GAAGAC | 5 cut(s) | 618, 2070, 2862, 3378, 4058 |
| Bbv12I | GWGCWC | 2 cut(s) | 482, 2250 |
| BceAI | ACGGC | 2 cut(s) | 256, 1692 |
| BciVI | GTATCC | 2 cut(s) | 1480, 4418 |
| BclI | TGATCA | 2 cut(s) | 1446, 1968 |
| BcnI | CCSGG | 3 cut(s) | 393, 394, 2927 |
| BcoDI | GTCTC | 7 cut(s) | 384, 741, 782, 1234, 2868, 2999, 3383 |
| BcuI | ACTAGT | 2 cut(s) | 2897, 2956 |
| BfmI | CTRYAG | 4 cut(s) | 3942, 3998, 4234, 4647 |
| BfoI | RGCGCY | 1 cut(s) | 4288 |
| BfuAI | ACCTGC | 1 cut(s) | 2840 |
| BfuI | GTATCC | 2 cut(s) | 1480, 4418 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4201 |
| BglII | AGATCT | 1 cut(s) | 3994 |
| Bme18I | GGWCC | 6 cut(s) | 77, 234, 1100, 1663, 3138, 4431 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3559 |
| BmeT110I | CYCGRG | 2 cut(s) | 337, 392 |
| BmrI | ACTGGG | 2 cut(s) | 2730, 3425 |
| BmuI | ACTGGG | 2 cut(s) | 2730, 3425 |
| BpiI | GAAGAC | 5 cut(s) | 618, 2070, 2862, 3378, 4058 |
| BpmI | CTGGAG | 4 cut(s) | 272, 1011, 1184, 3476 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1104, 2691 |
| Bpu14I | TTCGAA | 1 cut(s) | 662 |
| BpuEI | CTTGAG | 2 cut(s) | 637, 4565 |
| BpuMI | CCSGG | 3 cut(s) | 393, 394, 2927 |
| BsaAI | YACGTR | 2 cut(s) | 284, 632 |
| BsaBI | GATNNNNATC | 3 cut(s) | 223, 1491, 4788 |
| BsaHI | GRCGYC | 2 cut(s) | 2067, 4509 |
| BsaI | GGTCTC | 3 cut(s) | 1234, 2868, 3383 |
| BsaWI | WCCGGW | 3 cut(s) | 79, 727, 2715 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 281, 311, 5057, 5060, 5087, 5090 |
| Bse118I | RCCGGY | 2 cut(s) | 79, 1061 |
| Bse21I | CCTNAGG | 2 cut(s) | 429, 3510 |
| Bse3DI | GCAATG | 3 cut(s) | 1257, 1463, 4115 |
| Bse8I | GATNNNNATC | 3 cut(s) | 223, 1491, 4788 |
| BseJI | GATNNNNATC | 3 cut(s) | 223, 1491, 4788 |
| BseMI | GCAATG | 3 cut(s) | 1257, 1463, 4115 |
| BseMII | CTCAG | 9 cut(s) | 443, 693, 1095, 1473, 1644, 2705, 3819, 4117, 4265 |
| BseRI | GAGGAG | 6 cut(s) | 800, 1415, 3074, 4576, 5081, 5084 |
| BseSI | GKGCMC | 1 cut(s) | 4152 |
| BseX3I | CGGCCG | 1 cut(s) | 269 |
| BseYI | CCCAGC | 2 cut(s) | 73, 862 |
| BsgI | GTGCAG | 4 cut(s) | 752, 759, 1392, 2815 |
| Bsh1236I | CGCG | 3 cut(s) | 88, 113, 2175 |
| Bsh1285I | CGRYCG | 1 cut(s) | 272 |
| BshNI | GGYRCC | 2 cut(s) | 2148, 4820 |
| BshTI | ACCGGT | 1 cut(s) | 79 |
| BsiEI | CGRYCG | 1 cut(s) | 272 |
| BsiHKAI | GWGCWC | 2 cut(s) | 482, 2250 |
| BsiHKCI | CYCGRG | 2 cut(s) | 337, 392 |
| BsiSI | CCGG | 9 cut(s) | 80, 268, 393, 728, 1062, 2716, 2926, 3929, 4932 |
| BsmAI | GTCTC | 7 cut(s) | 384, 741, 782, 1234, 2868, 2999, 3383 |
| BsmI | GAATGC | 5 cut(s) | 463, 1700, 1761, 2650, 5019 |
| Bso31I | GGTCTC | 3 cut(s) | 1234, 2868, 3383 |
| BsoBI | CYCGRG | 2 cut(s) | 337, 392 |
| Bsp119I | TTCGAA | 1 cut(s) | 662 |
| Bsp1286I | GDGCHC | 4 cut(s) | 482, 581, 2250, 4152 |
| Bsp19I | CCATGG | 2 cut(s) | 1221, 3094 |
| BspACI | CCGC | 9 cut(s) | 5, 133, 144, 161, 461, 1996, 2131, 2444, 4479 |
| BspCNI | CTCAG | 9 cut(s) | 442, 694, 1096, 1474, 1645, 2704, 3820, 4116, 4264 |
| BspFNI | CGCG | 3 cut(s) | 88, 113, 2175 |
| BspHI | TCATGA | 2 cut(s) | 876, 3367 |
| BspMAI | CTGCAG | 3 cut(s) | 4002, 4238, 4651 |
| BspMI | ACCTGC | 1 cut(s) | 2840 |
| BspQI | GCTCTTC | 1 cut(s) | 2170 |
| BspT104I | TTCGAA | 1 cut(s) | 662 |
| BspT107I | GGYRCC | 2 cut(s) | 2148, 4820 |
| BspTNI | GGTCTC | 3 cut(s) | 1234, 2868, 3383 |
| BsrDI | GCAATG | 3 cut(s) | 1257, 1463, 4115 |
| BsrFI | RCCGGY | 2 cut(s) | 79, 1061 |
| BssAI | RCCGGY | 2 cut(s) | 79, 1061 |
| BssNI | GRCGYC | 2 cut(s) | 2067, 4509 |
| BssSI | CACGAG | 1 cut(s) | 56 |
| BssT1I | CCWWGG | 6 cut(s) | 814, 1221, 1510, 2402, 3094, 3184 |
| Bst2BI | CACGAG | 1 cut(s) | 56 |
| Bst6I | CTCTTC | 3 cut(s) | 1032, 2170, 3381 |
| BstACI | GRCGYC | 2 cut(s) | 2067, 4509 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 992, 3599 |
| BstBAI | YACGTR | 2 cut(s) | 284, 632 |
| BstBI | TTCGAA | 1 cut(s) | 662 |
| BstDSI | CCRYGG | 2 cut(s) | 1221, 3094 |
| BstFNI | CGCG | 3 cut(s) | 88, 113, 2175 |
| BstH2I | RGCGCY | 1 cut(s) | 4288 |
| BstHHI | GCGC | 6 cut(s) | 88, 115, 1741, 2177, 4270, 4287 |
| BstMAI | GTCTC | 7 cut(s) | 384, 741, 782, 1234, 2868, 2999, 3383 |
| BstMCI | CGRYCG | 1 cut(s) | 272 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 992, 1871, 2083, 2693, 3599, 4201 |
| BstNSI | RCATGY | 3 cut(s) | 196, 625, 3012 |
| BstSFI | CTRYAG | 4 cut(s) | 3942, 3998, 4234, 4647 |
| BstSLI | GKGCMC | 1 cut(s) | 4152 |
| BstUI | CGCG | 3 cut(s) | 88, 113, 2175 |
| BstV2I | GAAGAC | 5 cut(s) | 618, 2070, 2862, 3378, 4058 |
| BstX2I | RGATCY | 6 cut(s) | 1492, 1801, 2362, 3037, 3994, 4993 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 21, 3548, 4724 |
| BstYI | RGATCY | 6 cut(s) | 1492, 1801, 2362, 3037, 3994, 4993 |
| BstZI | CGGCCG | 1 cut(s) | 269 |
| Bsu36I | CCTNAGG | 2 cut(s) | 429, 3510 |
| BsuI | GTATCC | 2 cut(s) | 1480, 4418 |
| BtgI | CCRYGG | 2 cut(s) | 1221, 3094 |
| BtgZI | GCGATG | 2 cut(s) | 103, 2144 |
| BtsI | GCAGTG | 2 cut(s) | 3090, 3787 |
| BtsIMutI | CAGTG | 7 cut(s) | 694, 3090, 3413, 3429, 3576, 3787, 3930 |
| BveI | ACCTGC | 1 cut(s) | 2840 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2834, 3575, 3614, 4997 |
| CciI | TCATGA | 2 cut(s) | 876, 3367 |
| CfoI | GCGC | 6 cut(s) | 88, 115, 1741, 2177, 4270, 4287 |
| Cfr10I | RCCGGY | 2 cut(s) | 79, 1061 |
| Cfr9I | CCCGGG | 1 cut(s) | 392 |
| CseI | GACGC | 2 cut(s) | 1863, 4498 |
| Csp6I | GTAC | 7 cut(s) | 1233, 2149, 2706, 3200, 4178, 4592, 4642 |
| CspAI | ACCGGT | 1 cut(s) | 79 |
| CviQI | GTAC | 7 cut(s) | 1233, 2149, 2706, 3200, 4178, 4592, 4642 |
| DraI | TTTAAA | 1 cut(s) | 2464 |
| DraIII | CACNNNGTG | 2 cut(s) | 2768, 3125 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 165 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3559 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 165 |
| EaeI | YGGCCR | 4 cut(s) | 269, 547, 945, 4623 |
| EagI | CGGCCG | 1 cut(s) | 269 |
| Eam1104I | CTCTTC | 3 cut(s) | 1032, 2170, 3381 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3559 |
| EarI | CTCTTC | 3 cut(s) | 1032, 2170, 3381 |
| EciI | GGCGGA | 1 cut(s) | 133 |
| EclXI | CGGCCG | 1 cut(s) | 269 |
| Eco130I | CCWWGG | 6 cut(s) | 814, 1221, 1510, 2402, 3094, 3184 |
| Eco147I | AGGCCT | 2 cut(s) | 427, 3508 |
| Eco24I | GRGCYC | 1 cut(s) | 581 |
| Eco31I | GGTCTC | 3 cut(s) | 1234, 2868, 3383 |
| Eco32I | GATATC | 2 cut(s) | 2572, 2760 |
| Eco47I | GGWCC | 6 cut(s) | 77, 234, 1100, 1663, 3138, 4431 |
| Eco52I | CGGCCG | 1 cut(s) | 269 |
| Eco57I | CTGAAG | 9 cut(s) | 726, 1094, 1358, 3288, 3405, 3822, 4194, 4205, 4535 |
| Eco72I | CACGTG | 2 cut(s) | 284, 632 |
| Eco81I | CCTNAGG | 2 cut(s) | 429, 3510 |
| Eco88I | CYCGRG | 2 cut(s) | 337, 392 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1663, 3138 |
| EcoRI | GAATTC | 3 cut(s) | 568, 2278, 3859 |
| EcoRV | GATATC | 2 cut(s) | 2572, 2760 |
| EcoT14I | CCWWGG | 6 cut(s) | 814, 1221, 1510, 2402, 3094, 3184 |
| EcoT22I | ATGCAT | 1 cut(s) | 226 |
| EcoT38I | GRGCYC | 1 cut(s) | 581 |
| ErhI | CCWWGG | 6 cut(s) | 814, 1221, 1510, 2402, 3094, 3184 |
| FauI | CCCGC | 1 cut(s) | 4472 |
| FbaI | TGATCA | 2 cut(s) | 1446, 1968 |
| FriOI | GRGCYC | 1 cut(s) | 581 |
| FspI | TGCGCA | 2 cut(s) | 1740, 4269 |
| GlaI | GCGC | 6 cut(s) | 87, 114, 1740, 2176, 4269, 4286 |
| GsaI | CCCAGC | 2 cut(s) | 77, 866 |
| GsuI | CTGGAG | 4 cut(s) | 272, 1011, 1184, 3476 |
| HaeII | RGCGCY | 1 cut(s) | 4288 |
| HapII | CCGG | 9 cut(s) | 80, 268, 393, 728, 1062, 2716, 2926, 3929, 4932 |
| HgaI | GACGC | 2 cut(s) | 1863, 4498 |
| HhaI | GCGC | 6 cut(s) | 88, 115, 1741, 2177, 4270, 4287 |
| Hin1I | GRCGYC | 2 cut(s) | 2067, 4509 |
| Hin6I | GCGC | 6 cut(s) | 86, 113, 1739, 2175, 4268, 4285 |
| HinP1I | GCGC | 6 cut(s) | 86, 113, 1739, 2175, 4268, 4285 |
| HincII | GTYRAC | 2 cut(s) | 859, 3451 |
| HindII | GTYRAC | 2 cut(s) | 859, 3451 |
| HindIII | AAGCTT | 2 cut(s) | 2267, 2424 |
| HpaII | CCGG | 9 cut(s) | 80, 268, 393, 728, 1062, 2716, 2926, 3929, 4932 |
| Hpy166II | GTNNAC | 5 cut(s) | 176, 859, 938, 3451, 4907 |
| Hpy8I | GTNNAC | 5 cut(s) | 176, 859, 938, 3451, 4907 |
| Hpy99I | CGWCG | 2 cut(s) | 277, 4132 |
| HpyCH4IV | ACGT | 4 cut(s) | 283, 631, 1580, 2067 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 992, 1871, 2083, 2693, 3599, 4201 |
| HpySE526I | ACGT | 4 cut(s) | 283, 631, 1580, 2067 |
| Hsp92I | GRCGYC | 2 cut(s) | 2067, 4509 |
| HspAI | GCGC | 6 cut(s) | 86, 113, 1739, 2175, 4268, 4285 |
| KpnI | GGTACC | 1 cut(s) | 2152 |
| Ksp22I | TGATCA | 2 cut(s) | 1446, 1968 |
| LguI | GCTCTTC | 1 cut(s) | 2170 |
| LmnI | GCTCC | 4 cut(s) | 477, 1203, 3224, 5052 |
| MaeII | ACGT | 4 cut(s) | 283, 631, 1580, 2067 |
| MfeI | CAATTG | 1 cut(s) | 2051 |
| MflI | RGATCY | 6 cut(s) | 1492, 1801, 2362, 3037, 3994, 4993 |
| MhlI | GDGCHC | 4 cut(s) | 482, 581, 2250, 4152 |
| MlsI | TGGCCA | 1 cut(s) | 549 |
| MluNI | TGGCCA | 1 cut(s) | 549 |
| MlyI | GAGTC | 9 cut(s) | 77, 92, 713, 1123, 1541, 2028, 3368, 3665, 5081 |
| MmeI | TCCRAC | 1 cut(s) | 45 |
| Mox20I | TGGCCA | 1 cut(s) | 549 |
| Mph1103I | ATGCAT | 1 cut(s) | 226 |
| MroXI | GAANNNNTTC | 3 cut(s) | 35, 4186, 4364 |
| MscI | TGGCCA | 1 cut(s) | 549 |
| MslI | CAYNNNNRTG | 5 cut(s) | 19, 219, 4722, 4812, 5012 |
| Msp20I | TGGCCA | 1 cut(s) | 549 |
| MspA1I | CMGCKG | 5 cut(s) | 135, 866, 1368, 2831, 4479 |
| MspI | CCGG | 9 cut(s) | 80, 268, 393, 728, 1062, 2716, 2926, 3929, 4932 |
| MunI | CAATTG | 1 cut(s) | 2051 |
| Mva1269I | GAATGC | 5 cut(s) | 463, 1700, 1761, 2650, 5019 |
| MvnI | CGCG | 3 cut(s) | 88, 113, 2175 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 992, 1871, 2083, 2693, 3599, 4201 |
| NciI | CCSGG | 3 cut(s) | 393, 394, 2927 |
| NcoI | CCATGG | 2 cut(s) | 1221, 3094 |
| NmeAIII | GCCGAG | 2 cut(s) | 172, 3187 |
| NsbI | TGCGCA | 2 cut(s) | 1740, 4269 |
| NsiI | ATGCAT | 1 cut(s) | 226 |
| NspI | RCATGY | 3 cut(s) | 196, 625, 3012 |
| NspV | TTCGAA | 1 cut(s) | 662 |
| PagI | TCATGA | 2 cut(s) | 876, 3367 |
| PasI | CCCWGGG | 4 cut(s) | 117, 574, 960, 2618 |
| PceI | AGGCCT | 2 cut(s) | 427, 3508 |
| PciI | ACATGT | 2 cut(s) | 192, 3008 |
| PciSI | GCTCTTC | 1 cut(s) | 2170 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4337 |
| PctI | GAATGC | 5 cut(s) | 463, 1700, 1761, 2650, 5019 |
| PdmI | GAANNNNTTC | 3 cut(s) | 35, 4186, 4364 |
| PflFI | GACNNNGTC | 1 cut(s) | 703 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 170, 815 |
| PfoI | TCCNGGA | 2 cut(s) | 1567, 4410 |
| PinAI | ACCGGT | 1 cut(s) | 79 |
| PleI | GAGTC | 9 cut(s) | 76, 92, 712, 1122, 1540, 2027, 3368, 3664, 5080 |
| PmaCI | CACGTG | 2 cut(s) | 284, 632 |
| PmlI | CACGTG | 2 cut(s) | 284, 632 |
| PpsI | GAGTC | 9 cut(s) | 76, 92, 712, 1122, 1540, 2027, 3368, 3664, 5080 |
| Ppu21I | YACGTR | 2 cut(s) | 284, 632 |
| PpuMI | RGGWCCY | 2 cut(s) | 1663, 3138 |
| PscI | ACATGT | 2 cut(s) | 192, 3008 |
| PshBI | ATTAAT | 1 cut(s) | 3396 |
| PsiI | TTATAA | 2 cut(s) | 333, 1158 |
| Psp5II | RGGWCCY | 2 cut(s) | 1663, 3138 |
| PspCI | CACGTG | 2 cut(s) | 284, 632 |
| PspFI | CCCAGC | 2 cut(s) | 73, 862 |
| PspPPI | RGGWCCY | 2 cut(s) | 1663, 3138 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4282, 4314 |
| PstI | CTGCAG | 3 cut(s) | 4002, 4238, 4651 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2834, 3575, 3614, 4997 |
| PsuI | RGATCY | 6 cut(s) | 1492, 1801, 2362, 3037, 3994, 4993 |
| PsyI | GACNNNGTC | 1 cut(s) | 703 |
| PvuII | CAGCTG | 3 cut(s) | 866, 1368, 2831 |
| RsaI | GTAC | 7 cut(s) | 1234, 2150, 2707, 3201, 4179, 4593, 4643 |
| RsaNI | GTAC | 7 cut(s) | 1233, 2149, 2706, 3200, 4178, 4592, 4642 |
| RseI | CAYNNNNRTG | 5 cut(s) | 19, 219, 4722, 4812, 5012 |
| SapI | GCTCTTC | 1 cut(s) | 2170 |
| SchI | GAGTC | 9 cut(s) | 77, 92, 713, 1123, 1541, 2028, 3368, 3665, 5081 |
| SduI | GDGCHC | 4 cut(s) | 482, 581, 2250, 4152 |
| SfcI | CTRYAG | 4 cut(s) | 3942, 3998, 4234, 4647 |
| SfuI | TTCGAA | 1 cut(s) | 662 |
| SinI | GGWCC | 6 cut(s) | 77, 234, 1100, 1663, 3138, 4431 |
| SmaI | CCCGGG | 1 cut(s) | 394 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 19, 219, 4722, 4812, 5012 |
| SmlI | CTYRAG | 2 cut(s) | 652, 4544 |
| SmoI | CTYRAG | 2 cut(s) | 652, 4544 |
| SpeI | ACTAGT | 2 cut(s) | 2897, 2956 |
| SseBI | AGGCCT | 2 cut(s) | 427, 3508 |
| SsiI | CCGC | 9 cut(s) | 5, 133, 144, 161, 461, 1996, 2131, 2444, 4479 |
| SspI | AATATT | 1 cut(s) | 4084 |
| StuI | AGGCCT | 2 cut(s) | 427, 3508 |
| StyI | CCWWGG | 6 cut(s) | 814, 1221, 1510, 2402, 3094, 3184 |
| TaiI | ACGT | 4 cut(s) | 286, 634, 1583, 2070 |
| TaqI | TCGA | 2 cut(s) | 662, 2484 |
| TaqII | GACCGA | 1 cut(s) | 222 |
| TatI | WGTACW | 3 cut(s) | 1232, 2705, 4591 |
| TauI | GCSGC | 2 cut(s) | 7, 1999 |
| TscAI | CASTG | 7 cut(s) | 694, 3090, 3420, 3429, 3576, 3787, 3930 |
| TspGWI | ACGGA | 3 cut(s) | 2060, 4346, 5045 |
| TspMI | CCCGGG | 1 cut(s) | 392 |
| TspRI | CASTG | 7 cut(s) | 694, 3090, 3420, 3429, 3576, 3787, 3930 |
| Tth111I | GACNNNGTC | 1 cut(s) | 703 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 170, 815 |
| VpaK11BI | GGWCC | 6 cut(s) | 77, 234, 1100, 1663, 3138, 4431 |
| VspI | ATTAAT | 1 cut(s) | 3396 |
| XbaI | TCTAGA | 1 cut(s) | 3457 |
| XceI | RCATGY | 3 cut(s) | 196, 625, 3012 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 816 |
| XmaI | CCCGGG | 1 cut(s) | 392 |
| XmnI | GAANNNNTTC | 3 cut(s) | 35, 4186, 4364 |
| ZraI | GACGTC | 1 cut(s) | 2068 |
| Zsp2I | ATGCAT | 1 cut(s) | 226 |