DA1-related
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39830 AT2G39830 AT2G39830 AT2G39830 |
| fragaria_vesca | FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 FvH4_7g23550 |
| malus_domestica | MD01G1141300.v1.1 MD07G1205300.v1.1 MD07G1205400.v1.1 |
| prunus_persica | Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 Prupe.2G241500_v2.0.a1 |
| pyrus_communis | pycom01g16160 pycom07g19190 pycom07g19200 |
| rosa_chinensis | RchiOBHm_Chr1g0368711 |
| rosa_laevigata | RLG00000027195 |
| rosa_multiflora | Rmu_sc0001791.1_g000014 Rmu_sc0001791.1_g000015 |
| rosa_roxburghii | Rroxscaffold_4G00288340 |
| rosa_rugosa | Rorug01G0343900 Rorug01G0343900 Rorug01G0344000 Rorug01G0344000 Rorug01G0344100 Rorug01G0344100 Rorug01G0344100 Rorug01G0344100 |
| rosa_samantha | Rh1AG351400 Rh1BG315100 Rh1CG329700 Rh1DG346600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1384 |
| Acc36I | ACCTGC | 1 cut(s) | 1384 |
| AccB1I | GGYRCC | 1 cut(s) | 1097 |
| AccBSI | CCGCTC | 1 cut(s) | 195 |
| AccII | CGCG | 2 cut(s) | 55, 420 |
| AciI | CCGC | 6 cut(s) | 111, 134, 166, 193, 992, 1266 |
| AclWI | GGATC | 5 cut(s) | 174, 533, 546, 846, 1452 |
| AcoI | YGGCCR | 1 cut(s) | 496 |
| AcsI | RAATTY | 1 cut(s) | 1465 |
| AcuI | CTGAAG | 2 cut(s) | 273, 305 |
| AfaI | GTAC | 4 cut(s) | 635, 710, 1199, 1438 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 101, 930, 1382 |
| AflIII | ACRYGT | 1 cut(s) | 1200 |
| AgeI | ACCGGT | 1 cut(s) | 773 |
| AgsI | TTSAA | 4 cut(s) | 262, 818, 1234, 1325 |
| AjnI | CCWGG | 2 cut(s) | 441, 1185 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 818, 850 |
| AluBI | AGCT | 8 cut(s) | 25, 139, 307, 875, 887, 1271, 1403, 1412 |
| AluI | AGCT | 8 cut(s) | 25, 139, 307, 875, 887, 1271, 1403, 1412 |
| Alw26I | GTCTC | 3 cut(s) | 686, 801, 920 |
| AlwI | GGATC | 5 cut(s) | 174, 533, 546, 846, 1452 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 790 |
| Ama87I | CYCGRG | 2 cut(s) | 923, 1163 |
| AoxI | GGCC | 4 cut(s) | 92, 496, 907, 980 |
| ApeKI | GCWGC | 6 cut(s) | 136, 172, 672, 1268, 1400, 1409 |
| ApoI | RAATTY | 1 cut(s) | 1465 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 622, 654 |
| AsiGI | ACCGGT | 1 cut(s) | 773 |
| AspLEI | GCGC | 3 cut(s) | 57, 172, 205 |
| AspS9I | GGNCC | 1 cut(s) | 92 |
| AsuC2I | CCSGG | 1 cut(s) | 1227 |
| AsuHPI | GGTGA | 8 cut(s) | 10, 23, 158, 363, 788, 955, 1365, 1450 |
| AvaI | CYCGRG | 2 cut(s) | 923, 1163 |
| BamHI | GGATCC | 1 cut(s) | 538 |
| BanI | GGYRCC | 1 cut(s) | 1097 |
| BbsI | GAAGAC | 1 cut(s) | 1239 |
| BbvI | GCAGC | 6 cut(s) | 148, 159, 659, 1280, 1412, 1421 |
| BccI | CCATC | 4 cut(s) | 276, 603, 621, 921 |
| BceAI | ACGGC | 3 cut(s) | 483, 1141, 1228 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 720, 754 |
| BciT130I | CCWGG | 2 cut(s) | 443, 1187 |
| BcnI | CCSGG | 1 cut(s) | 1227 |
| BcoDI | GTCTC | 3 cut(s) | 686, 801, 920 |
| BfaI | CTAG | 4 cut(s) | 96, 198, 312, 1334 |
| BfmI | CTRYAG | 1 cut(s) | 673 |
| BfoI | RGCGCY | 1 cut(s) | 173 |
| BfuAI | ACCTGC | 1 cut(s) | 1384 |
| BisI | GCNGC | 7 cut(s) | 111, 137, 173, 673, 1269, 1401, 1410 |
| BlsI | GCNGC | 7 cut(s) | 112, 138, 174, 674, 1270, 1402, 1411 |
| BmcAI | AGTACT | 1 cut(s) | 635 |
| Bme1390I | CCNGG | 3 cut(s) | 443, 1187, 1227 |
| BmeT110I | CYCGRG | 2 cut(s) | 923, 1163 |
| BmgT120I | GGNCC | 1 cut(s) | 92 |
| BmiI | GGNNCC | 3 cut(s) | 6, 540, 1099 |
| BmrFI | CCNGG | 3 cut(s) | 443, 1187, 1227 |
| BmrI | ACTGGG | 1 cut(s) | 466 |
| BmsI | GCATC | 6 cut(s) | 599, 691, 978, 1006, 1110, 1188 |
| BmuI | ACTGGG | 1 cut(s) | 466 |
| BpiI | GAAGAC | 1 cut(s) | 1239 |
| BpuEI | CTTGAG | 1 cut(s) | 1229 |
| BpuMI | CCSGG | 1 cut(s) | 1227 |
| BsaBI | GATNNNNATC | 1 cut(s) | 543 |
| BsaJI | CCNNGG | 3 cut(s) | 183, 1082, 1164 |
| BsaWI | WCCGGW | 3 cut(s) | 773, 1149, 1460 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 101, 930, 1382 |
| Bse118I | RCCGGY | 1 cut(s) | 773 |
| Bse1I | ACTGG | 2 cut(s) | 246, 472 |
| Bse8I | GATNNNNATC | 1 cut(s) | 543 |
| BseBI | CCWGG | 2 cut(s) | 443, 1187 |
| BseDI | CCNNGG | 3 cut(s) | 183, 1082, 1164 |
| BseGI | GGATG | 8 cut(s) | 193, 466, 574, 613, 706, 828, 969, 1262 |
| BseJI | GATNNNNATC | 1 cut(s) | 543 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 101, 930, 1382 |
| BseMII | CTCAG | 1 cut(s) | 1040 |
| BseNI | ACTGG | 2 cut(s) | 246, 472 |
| BseRI | GAGGAG | 2 cut(s) | 233, 1401 |
| BseXI | GCAGC | 6 cut(s) | 148, 159, 659, 1280, 1412, 1421 |
| BseYI | CCCAGC | 2 cut(s) | 21, 361 |
| Bsh1236I | CGCG | 2 cut(s) | 55, 420 |
| BshFI | GGCC | 4 cut(s) | 94, 498, 909, 982 |
| BshNI | GGYRCC | 1 cut(s) | 1097 |
| BshTI | ACCGGT | 1 cut(s) | 773 |
| BsiHKCI | CYCGRG | 2 cut(s) | 923, 1163 |
| BsiSI | CCGG | 4 cut(s) | 774, 1150, 1226, 1461 |
| BslFI | GGGAC | 2 cut(s) | 469, 737 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 101, 930, 1382 |
| BsmAI | GTCTC | 3 cut(s) | 686, 801, 920 |
| BsmBI | CGTCTC | 1 cut(s) | 920 |
| BsmFI | GGGAC | 2 cut(s) | 469, 737 |
| BsmI | GAATGC | 1 cut(s) | 452 |
| BsnI | GGCC | 4 cut(s) | 94, 498, 909, 982 |
| BsoBI | CYCGRG | 2 cut(s) | 923, 1163 |
| Bsp143I | GATC | 4 cut(s) | 179, 538, 838, 1444 |
| BspACI | CCGC | 6 cut(s) | 111, 134, 166, 193, 992, 1266 |
| BspANI | GGCC | 4 cut(s) | 94, 498, 909, 982 |
| BspCNI | CTCAG | 1 cut(s) | 1039 |
| BspFNI | CGCG | 2 cut(s) | 55, 420 |
| BspLI | GGNNCC | 3 cut(s) | 6, 540, 1099 |
| BspMAI | CTGCAG | 1 cut(s) | 677 |
| BspMI | ACCTGC | 1 cut(s) | 1384 |
| BspPI | GGATC | 5 cut(s) | 174, 533, 546, 846, 1452 |
| BspQI | GCTCTTC | 1 cut(s) | 945 |
| BspT107I | GGYRCC | 1 cut(s) | 1097 |
| BsrBI | CCGCTC | 1 cut(s) | 195 |
| BsrFI | RCCGGY | 1 cut(s) | 773 |
| BsrI | ACTGG | 2 cut(s) | 246, 472 |
| BssAI | RCCGGY | 1 cut(s) | 773 |
| BssECI | CCNNGG | 3 cut(s) | 183, 1082, 1164 |
| BssMI | GATC | 4 cut(s) | 179, 538, 838, 1444 |
| BssT1I | CCWWGG | 2 cut(s) | 183, 1082 |
| Bst2UI | CCWGG | 2 cut(s) | 443, 1187 |
| Bst4CI | ACNGT | 4 cut(s) | 375, 638, 782, 961 |
| Bst6I | CTCTTC | 3 cut(s) | 945, 1282, 1288 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1406 |
| BstC8I | GCNNGC | 2 cut(s) | 168, 309 |
| BstDEI | CTNAG | 2 cut(s) | 688, 1026 |
| BstF5I | GGATG | 8 cut(s) | 193, 466, 574, 613, 706, 828, 969, 1262 |
| BstFNI | CGCG | 2 cut(s) | 55, 420 |
| BstH2I | RGCGCY | 1 cut(s) | 173 |
| BstHHI | GCGC | 3 cut(s) | 57, 172, 205 |
| BstKTI | GATC | 4 cut(s) | 182, 541, 841, 1447 |
| BstMAI | GTCTC | 3 cut(s) | 686, 801, 920 |
| BstMBI | GATC | 4 cut(s) | 179, 538, 838, 1444 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 172, 426, 678, 747, 1106, 1406, 1409 |
| BstNI | CCWGG | 2 cut(s) | 443, 1187 |
| BstNSI | RCATGY | 4 cut(s) | 832, 922, 1204, 1243 |
| BstSCI | CCNGG | 3 cut(s) | 441, 1185, 1225 |
| BstSFI | CTRYAG | 1 cut(s) | 673 |
| BstUI | CGCG | 2 cut(s) | 55, 420 |
| BstV1I | GCAGC | 6 cut(s) | 148, 159, 659, 1280, 1412, 1421 |
| BstV2I | GAAGAC | 1 cut(s) | 1239 |
| BstX2I | RGATCY | 1 cut(s) | 538 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 859 |
| BstYI | RGATCY | 1 cut(s) | 538 |
| BsuRI | GGCC | 4 cut(s) | 94, 498, 909, 982 |
| BtsCI | GGATG | 8 cut(s) | 193, 466, 574, 613, 706, 828, 969, 1262 |
| BtsIMutI | CAGTG | 2 cut(s) | 239, 479 |
| BveI | ACCTGC | 1 cut(s) | 1384 |
| Cac8I | GCNNGC | 2 cut(s) | 168, 309 |
| CaiI | CAGNNNCTG | 1 cut(s) | 790 |
| CfoI | GCGC | 3 cut(s) | 57, 172, 205 |
| Cfr10I | RCCGGY | 1 cut(s) | 773 |
| Cfr13I | GGNCC | 1 cut(s) | 92 |
| CseI | GACGC | 2 cut(s) | 796, 1421 |
| Csp6I | GTAC | 4 cut(s) | 634, 709, 1198, 1437 |
| CspAI | ACCGGT | 1 cut(s) | 773 |
| CviQI | GTAC | 4 cut(s) | 634, 709, 1198, 1437 |
| DdeI | CTNAG | 2 cut(s) | 688, 1026 |
| DpnI | GATC | 4 cut(s) | 181, 540, 840, 1446 |
| DpnII | GATC | 4 cut(s) | 179, 538, 838, 1444 |
| DraI | TTTAAA | 1 cut(s) | 562 |
| EaeI | YGGCCR | 1 cut(s) | 496 |
| Eam1104I | CTCTTC | 3 cut(s) | 945, 1282, 1288 |
| EarI | CTCTTC | 3 cut(s) | 945, 1282, 1288 |
| Eco130I | CCWWGG | 2 cut(s) | 183, 1082 |
| Eco57I | CTGAAG | 2 cut(s) | 273, 305 |
| Eco88I | CYCGRG | 2 cut(s) | 923, 1163 |
| EcoRII | CCWGG | 2 cut(s) | 441, 1185 |
| EcoT14I | CCWWGG | 2 cut(s) | 183, 1082 |
| EcoT22I | ATGCAT | 1 cut(s) | 452 |
| ErhI | CCWWGG | 2 cut(s) | 183, 1082 |
| Esp3I | CGTCTC | 1 cut(s) | 920 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 542, 574 |
| FaqI | GGGAC | 2 cut(s) | 469, 737 |
| FauI | CCCGC | 2 cut(s) | 159, 985 |
| FauNDI | CATATG | 2 cut(s) | 355, 1381 |
| Fnu4HI | GCNGC | 7 cut(s) | 111, 137, 173, 673, 1269, 1401, 1410 |
| FokI | GGATG | 8 cut(s) | 200, 453, 561, 600, 713, 835, 956, 1249 |
| Fsp4HI | GCNGC | 7 cut(s) | 111, 137, 173, 673, 1269, 1401, 1410 |
| FspBI | CTAG | 4 cut(s) | 96, 198, 312, 1334 |
| GlaI | GCGC | 3 cut(s) | 56, 171, 204 |
| GluI | GCNGC | 7 cut(s) | 111, 137, 173, 673, 1269, 1401, 1410 |
| GsaI | CCCAGC | 2 cut(s) | 25, 365 |
| HaeII | RGCGCY | 1 cut(s) | 173 |
| HaeIII | GGCC | 4 cut(s) | 94, 498, 909, 982 |
| HapII | CCGG | 4 cut(s) | 774, 1150, 1226, 1461 |
| HgaI | GACGC | 2 cut(s) | 796, 1421 |
| HhaI | GCGC | 3 cut(s) | 57, 172, 205 |
| Hin6I | GCGC | 3 cut(s) | 55, 170, 203 |
| HinP1I | GCGC | 3 cut(s) | 55, 170, 203 |
| HincII | GTYRAC | 1 cut(s) | 1417 |
| HindII | GTYRAC | 1 cut(s) | 1417 |
| HindIII | AAGCTT | 1 cut(s) | 305 |
| HpaII | CCGG | 4 cut(s) | 774, 1150, 1226, 1461 |
| HphI | GGTGA | 8 cut(s) | 10, 23, 158, 363, 788, 955, 1365, 1450 |
| Hpy166II | GTNNAC | 3 cut(s) | 77, 416, 1417 |
| Hpy188I | TCNGA | 6 cut(s) | 333, 504, 786, 1010, 1029, 1216 |
| Hpy188III | TCNNGA | 4 cut(s) | 85, 198, 323, 1163 |
| Hpy8I | GTNNAC | 3 cut(s) | 77, 416, 1417 |
| Hpy99I | CGWCG | 1 cut(s) | 1437 |
| HpyAV | CCTTC | 5 cut(s) | 18, 202, 320, 378, 812 |
| HpyCH4III | ACNGT | 4 cut(s) | 375, 638, 782, 961 |
| HpyCH4IV | ACGT | 4 cut(s) | 67, 156, 711, 1289 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 172, 426, 678, 747, 1106, 1406, 1409 |
| HpyF3I | CTNAG | 2 cut(s) | 688, 1026 |
| HpySE526I | ACGT | 4 cut(s) | 67, 156, 711, 1289 |
| HspAI | GCGC | 3 cut(s) | 55, 170, 203 |
| Kzo9I | GATC | 4 cut(s) | 179, 538, 838, 1444 |
| LguI | GCTCTTC | 1 cut(s) | 945 |
| Lsp1109I | GCAGC | 6 cut(s) | 148, 159, 659, 1280, 1412, 1421 |
| LweI | GCATC | 6 cut(s) | 599, 691, 978, 1006, 1110, 1188 |
| MaeI | CTAG | 4 cut(s) | 96, 198, 312, 1334 |
| MaeII | ACGT | 4 cut(s) | 67, 156, 711, 1289 |
| MaeIII | GTNAC | 9 cut(s) | 16, 146, 315, 624, 776, 961, 1051, 1086, 1131 |
| MalI | GATC | 4 cut(s) | 181, 540, 840, 1446 |
| MbiI | CCGCTC | 1 cut(s) | 195 |
| MboI | GATC | 4 cut(s) | 179, 538, 838, 1444 |
| MboII | GAAGA | 6 cut(s) | 266, 962, 1239, 1269, 1275, 1362 |
| MfeI | CAATTG | 2 cut(s) | 234, 833 |
| MflI | RGATCY | 1 cut(s) | 538 |
| MluCI | AATT | 9 cut(s) | 234, 599, 833, 987, 1001, 1031, 1115, 1320, 1465 |
| MlyI | GAGTC | 3 cut(s) | 565, 1030, 1220 |
| Mph1103I | ATGCAT | 1 cut(s) | 452 |
| MseI | TTAA | 2 cut(s) | 561, 1158 |
| MslI | CAYNNNNRTG | 1 cut(s) | 651 |
| MspA1I | CMGCKG | 1 cut(s) | 1412 |
| MspI | CCGG | 4 cut(s) | 774, 1150, 1226, 1461 |
| MspR9I | CCNGG | 3 cut(s) | 443, 1187, 1227 |
| MunI | CAATTG | 2 cut(s) | 234, 833 |
| Mva1269I | GAATGC | 1 cut(s) | 452 |
| MvaI | CCWGG | 2 cut(s) | 443, 1187 |
| MvnI | CGCG | 2 cut(s) | 55, 420 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 172, 426, 678, 747, 1106, 1406, 1409 |
| NciI | CCSGG | 1 cut(s) | 1227 |
| NdeI | CATATG | 2 cut(s) | 355, 1381 |
| NdeII | GATC | 4 cut(s) | 179, 538, 838, 1444 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 540, 1099 |
| NmeAIII | GCCGAG | 2 cut(s) | 139, 1008 |
| NmuCI | GTSAC | 6 cut(s) | 16, 146, 315, 624, 776, 961 |
| NsiI | ATGCAT | 1 cut(s) | 452 |
| NspI | RCATGY | 4 cut(s) | 832, 922, 1204, 1243 |
| PaqCI | CACCTGC | 1 cut(s) | 1384 |
| PciI | ACATGT | 1 cut(s) | 1200 |
| PciSI | GCTCTTC | 1 cut(s) | 945 |
| PctI | GAATGC | 1 cut(s) | 452 |
| PfeI | GAWTC | 7 cut(s) | 50, 130, 334, 755, 1153, 1230, 1367 |
| PinAI | ACCGGT | 1 cut(s) | 773 |
| PkrI | GCNGC | 7 cut(s) | 112, 138, 174, 674, 1270, 1402, 1411 |
| PleI | GAGTC | 3 cut(s) | 565, 1030, 1219 |
| PpsI | GAGTC | 3 cut(s) | 565, 1030, 1219 |
| PscI | ACATGT | 1 cut(s) | 1200 |
| Psp6I | CCWGG | 2 cut(s) | 441, 1185 |
| PspFI | CCCAGC | 2 cut(s) | 21, 361 |
| PspGI | CCWGG | 2 cut(s) | 441, 1185 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 540, 1099 |
| PspPI | GGNCC | 1 cut(s) | 92 |
| PstI | CTGCAG | 1 cut(s) | 677 |
| PstNI | CAGNNNCTG | 1 cut(s) | 790 |
| PsuI | RGATCY | 1 cut(s) | 538 |
| PvuII | CAGCTG | 1 cut(s) | 1412 |
| RsaI | GTAC | 4 cut(s) | 635, 710, 1199, 1438 |
| RsaNI | GTAC | 4 cut(s) | 634, 709, 1198, 1437 |
| RseI | CAYNNNNRTG | 1 cut(s) | 651 |
| SapI | GCTCTTC | 1 cut(s) | 945 |
| SaqAI | TTAA | 2 cut(s) | 561, 1158 |
| SatI | GCNGC | 7 cut(s) | 111, 137, 173, 673, 1269, 1401, 1410 |
| Sau3AI | GATC | 4 cut(s) | 179, 538, 838, 1444 |
| Sau96I | GGNCC | 1 cut(s) | 92 |
| ScaI | AGTACT | 1 cut(s) | 635 |
| SchI | GAGTC | 3 cut(s) | 565, 1030, 1220 |
| ScrFI | CCNGG | 3 cut(s) | 443, 1187, 1227 |
| SfaNI | GCATC | 6 cut(s) | 599, 691, 978, 1006, 1110, 1188 |
| SfcI | CTRYAG | 1 cut(s) | 673 |
| SgrAI | CRCCGGYG | 1 cut(s) | 773 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 651 |
| SmlI | CTYRAG | 1 cut(s) | 1208 |
| SmoI | CTYRAG | 1 cut(s) | 1208 |
| Sse9I | AATT | 9 cut(s) | 234, 599, 833, 987, 1001, 1031, 1115, 1320, 1465 |
| SsiI | CCGC | 6 cut(s) | 111, 134, 166, 193, 992, 1266 |
| SspMI | CTAG | 4 cut(s) | 96, 198, 312, 1334 |
| StyD4I | CCNGG | 3 cut(s) | 441, 1185, 1225 |
| StyI | CCWWGG | 2 cut(s) | 183, 1082 |
| TaaI | ACNGT | 4 cut(s) | 375, 638, 782, 961 |
| TaiI | ACGT | 4 cut(s) | 70, 159, 714, 1292 |
| TaqI | TCGA | 5 cut(s) | 178, 864, 1039, 1316, 1396 |
| TasI | AATT | 9 cut(s) | 234, 599, 833, 987, 1001, 1031, 1115, 1320, 1465 |
| TatI | WGTACW | 1 cut(s) | 633 |
| TauI | GCSGC | 1 cut(s) | 113 |
| TfiI | GAWTC | 7 cut(s) | 50, 130, 334, 755, 1153, 1230, 1367 |
| Tru1I | TTAA | 2 cut(s) | 561, 1158 |
| Tru9I | TTAA | 2 cut(s) | 561, 1158 |
| TscAI | CASTG | 2 cut(s) | 246, 479 |
| TseFI | GTSAC | 6 cut(s) | 16, 146, 315, 624, 776, 961 |
| TseI | GCWGC | 6 cut(s) | 136, 172, 672, 1268, 1400, 1409 |
| Tsp45I | GTSAC | 6 cut(s) | 16, 146, 315, 624, 776, 961 |
| TspDTI | ATGAA | 9 cut(s) | 77, 455, 663, 705, 839, 1128, 1239, 1284, 1336 |
| TspGWI | ACGGA | 1 cut(s) | 606 |
| TspRI | CASTG | 2 cut(s) | 246, 479 |
| XapI | RAATTY | 1 cut(s) | 1465 |
| XbaI | TCTAGA | 1 cut(s) | 197 |
| XceI | RCATGY | 4 cut(s) | 832, 922, 1204, 1243 |
| XspI | CTAG | 4 cut(s) | 96, 198, 312, 1334 |
| ZrmI | AGTACT | 1 cut(s) | 635 |
| Zsp2I | ATGCAT | 1 cut(s) | 452 |