MD07G1205300.v1.1

DA1-related

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
28286048 .. 28294526
8479 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1205300.v1.1.491

Sequence Viewer

Length: 1479 bp
ATGGTTCCTTCAGGTGTCACCCAGCTTTCTCACCCTTGTATTTATGAGGAATCGCGCTTTATGAAACGTATCGGTAAACTTTTCAGGAGTGGGCCTAGTCGTGGAGAAGCCGCCGAGCGTAGCAACCCGAATCCGCAGCTTATTGGTGACGAAAACGTGCTTTGGCGGGCGCTGCCTCGATCCTTGGATGACCGCTCTAGAGCGCAGAAGGAGAAAGAGGAGTTAGACCATGCAATTGCACTGGCTCTGGCTGAAGATTTGAAAAAAACAAGTGGATATAGATGGCAGACAGAAAAAGATGACAAGCTTGCTAGGTCACTTCAGGAAGGTCTGAATCCACCTTTATATCCTCCATATGCCCCAGCCCCTTCACCGTATTATCCCAATGGACAACAAAGAATATGTGGTGGTTGTAAACGCGACATACGCTATGGCAACTACCTGGAATGCATGGGGACTTTCTTTCATCCCCAGTGCTTCTGTTGTCGTTCTTGTGGCCGTCCGATTGTTGAGAATGAGTTTTCTTTGTCAGGGAGGGATCCATATCACAAGTCCTGCTTTAAAGAACTGACTCATCCCAAGTGTGAAGTTTGCCATCAATTTTACAGATGCCATCCGTTTTGGTCACAAAAGTACTGTCCAGCACATGAACATGATAACACATCTCGTTGCTGCAGTTGCGAACGCTTAGAGACATGGGATGCAAGGTACGTTTCATTGGGGGACGGGCGAAGTCTATGCTTGGAGTGCATGGAATCTGCTATCATGGACACCGGTGACTGTCAGACGCTGTATCACGCCATACGAGACTACTTTGAAGGGATGAACATGCAATTGGATCAGCAAATACCCATGCTTCTGGTCGAAAGACAAGCTCTAAACGAAGCTATTGTAGGCGAAAAGAGTGGCCTCCATCACATGCCCGAGACGAGGGGTTTATGCCTTTTGGAAGAGCAGACTGTCACCAGCATCCTCAAAAGGCCGAGAATTGCGGGGCATCAATTTATCGGAATGAGAACCCAACCTCAGAAATTGACTCGAAAATGTGAAGTTACTGCCATTCTTGTTCTCTATGGCTTCCCAAGGTTACTAACAGGTGCCATTCTTGCCCATGAATTGATGCACGGCTGGTTACACCTCAAAGGCTACCGGAATCTTAATCCCGAGGTAGAGAAAGGCATCTGCCAGGTGCTTTCGTACATGTGGCTTGAGTCAGAAGTAATGCCGGGATTCAAAAACATGCCGTCTTCATCTACATTTACATCCGCAGCTTCCTCTTCCTCTTCCACGTTTTCATCAAAAAAAGGTGGAAAATCGAAAATTGAACACAAACTAGGGGAGTTTTTCATGCACAAAATCGCCAACGATTCTTCACCTGCATATGGAGGAGGGTTTCGAGCAGCTAATGCAGCTGTCAACAAGTATGGTTTGCGTCGTACATTGGATCACATTCGCCTCACCGGAAATTTCCCGTTGTAA
Functional Annotation

Protein Analysis

493

Amino Acids

55.81

Weight (kDa)

8.53

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 135 - 189 2.5e-08 LIM domain
DA1-like PF12315 274 - 487 1.4e-94 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1384
Acc36I ACCTGC 1 cut(s) 1384
AccB1I GGYRCC 1 cut(s) 1097
AccBSI CCGCTC 1 cut(s) 195
AccII CGCG 2 cut(s) 55, 420
AciI CCGC 6 cut(s) 111, 134, 166, 193, 992, 1266
AclWI GGATC 5 cut(s) 174, 533, 546, 846, 1452
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 1 cut(s) 1465
AcuI CTGAAG 2 cut(s) 273, 305
AfaI GTAC 4 cut(s) 635, 710, 1199, 1438
AfiI CCNNNNNNNGG 3 cut(s) 101, 930, 1382
AflIII ACRYGT 1 cut(s) 1200
AgeI ACCGGT 1 cut(s) 773
AgsI TTSAA 4 cut(s) 262, 818, 1234, 1325
AjnI CCWGG 2 cut(s) 441, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 8 cut(s) 25, 139, 307, 875, 887, 1271, 1403, 1412
AluI AGCT 8 cut(s) 25, 139, 307, 875, 887, 1271, 1403, 1412
Alw26I GTCTC 3 cut(s) 686, 801, 920
AlwI GGATC 5 cut(s) 174, 533, 546, 846, 1452
AlwNI CAGNNNCTG 1 cut(s) 790
Ama87I CYCGRG 2 cut(s) 923, 1163
AoxI GGCC 4 cut(s) 92, 496, 907, 980
ApeKI GCWGC 6 cut(s) 136, 172, 672, 1268, 1400, 1409
ApoI RAATTY 1 cut(s) 1465
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AsiGI ACCGGT 1 cut(s) 773
AspLEI GCGC 3 cut(s) 57, 172, 205
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 1227
AsuHPI GGTGA 8 cut(s) 10, 23, 158, 363, 788, 955, 1365, 1450
AvaI CYCGRG 2 cut(s) 923, 1163
BamHI GGATCC 1 cut(s) 538
BanI GGYRCC 1 cut(s) 1097
BbsI GAAGAC 1 cut(s) 1239
BbvI GCAGC 6 cut(s) 148, 159, 659, 1280, 1412, 1421
BccI CCATC 4 cut(s) 276, 603, 621, 921
BceAI ACGGC 3 cut(s) 483, 1141, 1228
BcgI CGANNNNNNTGC 2 cut(s) 720, 754
BciT130I CCWGG 2 cut(s) 443, 1187
BcnI CCSGG 1 cut(s) 1227
BcoDI GTCTC 3 cut(s) 686, 801, 920
BfaI CTAG 4 cut(s) 96, 198, 312, 1334
BfmI CTRYAG 1 cut(s) 673
BfoI RGCGCY 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 1384
BisI GCNGC 7 cut(s) 111, 137, 173, 673, 1269, 1401, 1410
BlsI GCNGC 7 cut(s) 112, 138, 174, 674, 1270, 1402, 1411
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 3 cut(s) 443, 1187, 1227
BmeT110I CYCGRG 2 cut(s) 923, 1163
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 6, 540, 1099
BmrFI CCNGG 3 cut(s) 443, 1187, 1227
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 6 cut(s) 599, 691, 978, 1006, 1110, 1188
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 1239
BpuEI CTTGAG 1 cut(s) 1229
BpuMI CCSGG 1 cut(s) 1227
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 183, 1082, 1164
BsaWI WCCGGW 3 cut(s) 773, 1149, 1460
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 930, 1382
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 2 cut(s) 246, 472
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 2 cut(s) 443, 1187
BseDI CCNNGG 3 cut(s) 183, 1082, 1164
BseGI GGATG 8 cut(s) 193, 466, 574, 613, 706, 828, 969, 1262
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 3 cut(s) 101, 930, 1382
BseMII CTCAG 1 cut(s) 1040
BseNI ACTGG 2 cut(s) 246, 472
BseRI GAGGAG 2 cut(s) 233, 1401
BseXI GCAGC 6 cut(s) 148, 159, 659, 1280, 1412, 1421
BseYI CCCAGC 2 cut(s) 21, 361
Bsh1236I CGCG 2 cut(s) 55, 420
BshFI GGCC 4 cut(s) 94, 498, 909, 982
BshNI GGYRCC 1 cut(s) 1097
BshTI ACCGGT 1 cut(s) 773
BsiHKCI CYCGRG 2 cut(s) 923, 1163
BsiSI CCGG 4 cut(s) 774, 1150, 1226, 1461
BslFI GGGAC 2 cut(s) 469, 737
BslI CCNNNNNNNGG 3 cut(s) 101, 930, 1382
BsmAI GTCTC 3 cut(s) 686, 801, 920
BsmBI CGTCTC 1 cut(s) 920
BsmFI GGGAC 2 cut(s) 469, 737
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 4 cut(s) 94, 498, 909, 982
BsoBI CYCGRG 2 cut(s) 923, 1163
Bsp143I GATC 4 cut(s) 179, 538, 838, 1444
BspACI CCGC 6 cut(s) 111, 134, 166, 193, 992, 1266
BspANI GGCC 4 cut(s) 94, 498, 909, 982
BspCNI CTCAG 1 cut(s) 1039
BspFNI CGCG 2 cut(s) 55, 420
BspLI GGNNCC 3 cut(s) 6, 540, 1099
BspMAI CTGCAG 1 cut(s) 677
BspMI ACCTGC 1 cut(s) 1384
BspPI GGATC 5 cut(s) 174, 533, 546, 846, 1452
BspQI GCTCTTC 1 cut(s) 945
BspT107I GGYRCC 1 cut(s) 1097
BsrBI CCGCTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 773
BsrI ACTGG 2 cut(s) 246, 472
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 3 cut(s) 183, 1082, 1164
BssMI GATC 4 cut(s) 179, 538, 838, 1444
BssT1I CCWWGG 2 cut(s) 183, 1082
Bst2UI CCWGG 2 cut(s) 443, 1187
Bst4CI ACNGT 4 cut(s) 375, 638, 782, 961
Bst6I CTCTTC 3 cut(s) 945, 1282, 1288
BstAPI GCANNNNNTGC 1 cut(s) 1406
BstC8I GCNNGC 2 cut(s) 168, 309
BstDEI CTNAG 2 cut(s) 688, 1026
BstF5I GGATG 8 cut(s) 193, 466, 574, 613, 706, 828, 969, 1262
BstFNI CGCG 2 cut(s) 55, 420
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 3 cut(s) 57, 172, 205
BstKTI GATC 4 cut(s) 182, 541, 841, 1447
BstMAI GTCTC 3 cut(s) 686, 801, 920
BstMBI GATC 4 cut(s) 179, 538, 838, 1444
BstMWI GCNNNNNNNGC 7 cut(s) 172, 426, 678, 747, 1106, 1406, 1409
BstNI CCWGG 2 cut(s) 443, 1187
BstNSI RCATGY 4 cut(s) 832, 922, 1204, 1243
BstSCI CCNGG 3 cut(s) 441, 1185, 1225
BstSFI CTRYAG 1 cut(s) 673
BstUI CGCG 2 cut(s) 55, 420
BstV1I GCAGC 6 cut(s) 148, 159, 659, 1280, 1412, 1421
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 859
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 4 cut(s) 94, 498, 909, 982
BtsCI GGATG 8 cut(s) 193, 466, 574, 613, 706, 828, 969, 1262
BtsIMutI CAGTG 2 cut(s) 239, 479
BveI ACCTGC 1 cut(s) 1384
Cac8I GCNNGC 2 cut(s) 168, 309
CaiI CAGNNNCTG 1 cut(s) 790
CfoI GCGC 3 cut(s) 57, 172, 205
Cfr10I RCCGGY 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 2 cut(s) 796, 1421
Csp6I GTAC 4 cut(s) 634, 709, 1198, 1437
CspAI ACCGGT 1 cut(s) 773
CviQI GTAC 4 cut(s) 634, 709, 1198, 1437
DdeI CTNAG 2 cut(s) 688, 1026
DpnI GATC 4 cut(s) 181, 540, 840, 1446
DpnII GATC 4 cut(s) 179, 538, 838, 1444
DraI TTTAAA 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 3 cut(s) 945, 1282, 1288
EarI CTCTTC 3 cut(s) 945, 1282, 1288
Eco130I CCWWGG 2 cut(s) 183, 1082
Eco57I CTGAAG 2 cut(s) 273, 305
Eco88I CYCGRG 2 cut(s) 923, 1163
EcoRII CCWGG 2 cut(s) 441, 1185
EcoT14I CCWWGG 2 cut(s) 183, 1082
EcoT22I ATGCAT 1 cut(s) 452
ErhI CCWWGG 2 cut(s) 183, 1082
Esp3I CGTCTC 1 cut(s) 920
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 2 cut(s) 469, 737
FauI CCCGC 2 cut(s) 159, 985
FauNDI CATATG 2 cut(s) 355, 1381
Fnu4HI GCNGC 7 cut(s) 111, 137, 173, 673, 1269, 1401, 1410
FokI GGATG 8 cut(s) 200, 453, 561, 600, 713, 835, 956, 1249
Fsp4HI GCNGC 7 cut(s) 111, 137, 173, 673, 1269, 1401, 1410
FspBI CTAG 4 cut(s) 96, 198, 312, 1334
GlaI GCGC 3 cut(s) 56, 171, 204
GluI GCNGC 7 cut(s) 111, 137, 173, 673, 1269, 1401, 1410
GsaI CCCAGC 2 cut(s) 25, 365
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 4 cut(s) 94, 498, 909, 982
HapII CCGG 4 cut(s) 774, 1150, 1226, 1461
HgaI GACGC 2 cut(s) 796, 1421
HhaI GCGC 3 cut(s) 57, 172, 205
Hin6I GCGC 3 cut(s) 55, 170, 203
HinP1I GCGC 3 cut(s) 55, 170, 203
HincII GTYRAC 1 cut(s) 1417
HindII GTYRAC 1 cut(s) 1417
HindIII AAGCTT 1 cut(s) 305
HpaII CCGG 4 cut(s) 774, 1150, 1226, 1461
HphI GGTGA 8 cut(s) 10, 23, 158, 363, 788, 955, 1365, 1450
Hpy166II GTNNAC 3 cut(s) 77, 416, 1417
Hpy188I TCNGA 6 cut(s) 333, 504, 786, 1010, 1029, 1216
Hpy188III TCNNGA 4 cut(s) 85, 198, 323, 1163
Hpy8I GTNNAC 3 cut(s) 77, 416, 1417
Hpy99I CGWCG 1 cut(s) 1437
HpyAV CCTTC 5 cut(s) 18, 202, 320, 378, 812
HpyCH4III ACNGT 4 cut(s) 375, 638, 782, 961
HpyCH4IV ACGT 4 cut(s) 67, 156, 711, 1289
HpyF10VI GCNNNNNNNGC 7 cut(s) 172, 426, 678, 747, 1106, 1406, 1409
HpyF3I CTNAG 2 cut(s) 688, 1026
HpySE526I ACGT 4 cut(s) 67, 156, 711, 1289
HspAI GCGC 3 cut(s) 55, 170, 203
Kzo9I GATC 4 cut(s) 179, 538, 838, 1444
LguI GCTCTTC 1 cut(s) 945
Lsp1109I GCAGC 6 cut(s) 148, 159, 659, 1280, 1412, 1421
LweI GCATC 6 cut(s) 599, 691, 978, 1006, 1110, 1188
MaeI CTAG 4 cut(s) 96, 198, 312, 1334
MaeII ACGT 4 cut(s) 67, 156, 711, 1289
MaeIII GTNAC 9 cut(s) 16, 146, 315, 624, 776, 961, 1051, 1086, 1131
MalI GATC 4 cut(s) 181, 540, 840, 1446
MbiI CCGCTC 1 cut(s) 195
MboI GATC 4 cut(s) 179, 538, 838, 1444
MboII GAAGA 6 cut(s) 266, 962, 1239, 1269, 1275, 1362
MfeI CAATTG 2 cut(s) 234, 833
MflI RGATCY 1 cut(s) 538
MluCI AATT 9 cut(s) 234, 599, 833, 987, 1001, 1031, 1115, 1320, 1465
MlyI GAGTC 3 cut(s) 565, 1030, 1220
Mph1103I ATGCAT 1 cut(s) 452
MseI TTAA 2 cut(s) 561, 1158
MslI CAYNNNNRTG 1 cut(s) 651
MspA1I CMGCKG 1 cut(s) 1412
MspI CCGG 4 cut(s) 774, 1150, 1226, 1461
MspR9I CCNGG 3 cut(s) 443, 1187, 1227
MunI CAATTG 2 cut(s) 234, 833
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 2 cut(s) 443, 1187
MvnI CGCG 2 cut(s) 55, 420
MwoI GCNNNNNNNGC 7 cut(s) 172, 426, 678, 747, 1106, 1406, 1409
NciI CCSGG 1 cut(s) 1227
NdeI CATATG 2 cut(s) 355, 1381
NdeII GATC 4 cut(s) 179, 538, 838, 1444
NlaIV GGNNCC 3 cut(s) 6, 540, 1099
NmeAIII GCCGAG 2 cut(s) 139, 1008
NmuCI GTSAC 6 cut(s) 16, 146, 315, 624, 776, 961
NsiI ATGCAT 1 cut(s) 452
NspI RCATGY 4 cut(s) 832, 922, 1204, 1243
PaqCI CACCTGC 1 cut(s) 1384
PciI ACATGT 1 cut(s) 1200
PciSI GCTCTTC 1 cut(s) 945
PctI GAATGC 1 cut(s) 452
PfeI GAWTC 7 cut(s) 50, 130, 334, 755, 1153, 1230, 1367
PinAI ACCGGT 1 cut(s) 773
PkrI GCNGC 7 cut(s) 112, 138, 174, 674, 1270, 1402, 1411
PleI GAGTC 3 cut(s) 565, 1030, 1219
PpsI GAGTC 3 cut(s) 565, 1030, 1219
PscI ACATGT 1 cut(s) 1200
Psp6I CCWGG 2 cut(s) 441, 1185
PspFI CCCAGC 2 cut(s) 21, 361
PspGI CCWGG 2 cut(s) 441, 1185
PspN4I GGNNCC 3 cut(s) 6, 540, 1099
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 677
PstNI CAGNNNCTG 1 cut(s) 790
PsuI RGATCY 1 cut(s) 538
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 4 cut(s) 635, 710, 1199, 1438
RsaNI GTAC 4 cut(s) 634, 709, 1198, 1437
RseI CAYNNNNRTG 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 945
SaqAI TTAA 2 cut(s) 561, 1158
SatI GCNGC 7 cut(s) 111, 137, 173, 673, 1269, 1401, 1410
Sau3AI GATC 4 cut(s) 179, 538, 838, 1444
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 3 cut(s) 565, 1030, 1220
ScrFI CCNGG 3 cut(s) 443, 1187, 1227
SfaNI GCATC 6 cut(s) 599, 691, 978, 1006, 1110, 1188
SfcI CTRYAG 1 cut(s) 673
SgrAI CRCCGGYG 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 1208
SmoI CTYRAG 1 cut(s) 1208
Sse9I AATT 9 cut(s) 234, 599, 833, 987, 1001, 1031, 1115, 1320, 1465
SsiI CCGC 6 cut(s) 111, 134, 166, 193, 992, 1266
SspMI CTAG 4 cut(s) 96, 198, 312, 1334
StyD4I CCNGG 3 cut(s) 441, 1185, 1225
StyI CCWWGG 2 cut(s) 183, 1082
TaaI ACNGT 4 cut(s) 375, 638, 782, 961
TaiI ACGT 4 cut(s) 70, 159, 714, 1292
TaqI TCGA 5 cut(s) 178, 864, 1039, 1316, 1396
TasI AATT 9 cut(s) 234, 599, 833, 987, 1001, 1031, 1115, 1320, 1465
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 7 cut(s) 50, 130, 334, 755, 1153, 1230, 1367
Tru1I TTAA 2 cut(s) 561, 1158
Tru9I TTAA 2 cut(s) 561, 1158
TscAI CASTG 2 cut(s) 246, 479
TseFI GTSAC 6 cut(s) 16, 146, 315, 624, 776, 961
TseI GCWGC 6 cut(s) 136, 172, 672, 1268, 1400, 1409
Tsp45I GTSAC 6 cut(s) 16, 146, 315, 624, 776, 961
TspDTI ATGAA 9 cut(s) 77, 455, 663, 705, 839, 1128, 1239, 1284, 1336
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 2 cut(s) 246, 479
XapI RAATTY 1 cut(s) 1465
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 4 cut(s) 832, 922, 1204, 1243
XspI CTAG 4 cut(s) 96, 198, 312, 1334
ZrmI AGTACT 1 cut(s) 635
Zsp2I ATGCAT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.