Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011821

Physical Location & Seq

Genomic Coordinates Reverse (-)

16647711 .. 16649527

Gene Structure 1817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAACGGAGAAATCTCTCGTCCGCCGGAGCTAATATCGTCCCGGAATCCTTGCAAGAGTTTTGAAAATGCAATACACAAAGCAGTTGAGGCAGAGCTCGCCGAGCTAGCGAAAAGCGACGCGAACGGCGGCGGAAAGAGTAAAGTGAAAGGACCTTGGTTGCCGGAGCAAGATGAGGCTCTCACGAGGCTTGTGAAAATGTGTGGGCCGAGGAACTGGAATCTAATCTCCCGTGGAATCCCAGGTCGCTCTGGTAAATCTTGCCGATTACGTTGGTGTAATCAGCTCGATCCTATCCTCAAACGAAAACCTTTCTCTGATGAGGAGGAGCATATGATAATGTCTGCACAGGCGGTTCTTGGGAACAAATGGTCTGTGATTGCTAAACTCTTACCTGGGAGAACAGATAATGCCATTAAGAATCATTGGAACTCTAATCTTAGACGTAAACCAGCAGAACAATGGAAGATTCCTCTATTGATGTCTAATACAGAGATAGTATATCAACTGTATCCATCAATGGTCAGAAGGATATCAAACGCATCCCCCAAAGAACATCTACCTCAAGAAGAAGAAACCGGTGTATTAAGTGATGATAAAATGGATGATGAAGCAAAGGAGCCTCCTCGGGAGCAAAATAGTAAAACTGGTGTTTATCGTCCAGTGGCTCGAATGGGTGCTTTCAGTGTCTGTAAACCAGGATACATGGCTCCATGTGAGGGACCTTTGGTTCAAGCATCAAGACCTGACTCATTGGCTGGTAAATTTCTTCAGTCTCTTTGTTATGATCCTATTATCCCTTCAAAATGCGGTCACGGTTGCTGCAACCATCAAGACAGCACAACACTGTCATCATCGTCGGTGCTGGGATCAGAGTTTGTGGATTATGAGGAACATTCTTCTGCAGAGTTAGATAAAGAATTGATCTCTATATCAAATGACCTGAACAATACTGCTTGGATTAGGAGTGGGAAGGAAGCTGAACAGAGTTTGAAGGCTGATGATCAGTTTCGTCGTGAGTATGCTCACTCGAAATTTAGTGGAATGGTAAACAATGGTGTATCAAGTCAGATGGTGAGACAAGATTTAAGGGCTTTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

367

Amino Acids

40.91

Weight (kDa)

7.98

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	50 - 96	4.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	53 - 112	2.2e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	102 - 147	3.3e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39880 AT3G55730
fragaria_vesca	FvH4_7g23750
malus_domestica	MD01G1144700.v1.1 MD07G1211300.v1.1
prunus_persica	Prupe.2G244100_v2.0.a1
pyrus_communis	pycom01g16430 pycom07g19480
rosa_chinensis	RchiOBHm_Chr1g0369061
rosa_laevigata	RLG00000027160
rosa_multiflora	Rmu_sc0004250.1_g000025 Rmu_sc0008155.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288040
rosa_rugosa	Rorug01G0347700
rosa_samantha	Rh1AG354500 Rh1BG317800 Rh1CG332300 Rh1DG348700
rosa_wichuraiana	Rw1G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	122
AciI	CCGC	5 cut(s)	23, 129, 132, 353, 810
AclWI	GGATC	3 cut(s)	284, 782, 877
AcsI	RAATTY	2 cut(s)	764, 1034
AcuI	CTGAAG	1 cut(s)	755
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgeI	ACCGGT	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	65, 734, 804, 994
AjnI	CCWGG	3 cut(s)	241, 394, 697
AloI	GAACNNNNNNTCC	2 cut(s)	714, 746
AluBI	AGCT	6 cut(s)	31, 97, 106, 286, 980, 1101
AluI	AGCT	6 cut(s)	31, 97, 106, 286, 980, 1101
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	2 cut(s)	780, 1072
AlwI	GGATC	3 cut(s)	284, 782, 877
AlwNI	CAGNNNCTG	1 cut(s)	690
Ama87I	CYCGRG	1 cut(s)	627
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	822
ApoI	RAATTY	2 cut(s)	764, 1034
AsiGI	ACCGGT	1 cut(s)	578
AspS9I	GGNCC	3 cut(s)	152, 206, 722
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	1087
AsuNHI	GCTAGC	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	627
AvaII	GGWCC	2 cut(s)	152, 722
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	809
BccI	CCATC	3 cut(s)	523, 837, 1066
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	3 cut(s)	243, 396, 699
BciVI	GTATCC	2 cut(s)	522, 695
BclI	TGATCA	1 cut(s)	1003
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	780, 1072
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	903
BfuI	GTATCC	2 cut(s)	522, 695
BisI	GCNGC	2 cut(s)	130, 823
BlsI	GCNGC	2 cut(s)	131, 824
Bme1390I	CCNGG	4 cut(s)	43, 243, 396, 699
Bme18I	GGWCC	2 cut(s)	152, 722
BmeT110I	CYCGRG	1 cut(s)	627
BmgT120I	GGNCC	3 cut(s)	152, 206, 722
BmiI	GGNNCC	3 cut(s)	621, 711, 723
BmrFI	CCNGG	4 cut(s)	43, 243, 396, 699
BmsI	GCATC	2 cut(s)	551, 746
BmtI	GCTAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	6 cut(s)	155, 209, 232, 241, 395, 626
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	3 cut(s)	221, 652, 662
BseBI	CCWGG	3 cut(s)	243, 396, 699
BseDI	CCNNGG	6 cut(s)	155, 209, 232, 241, 395, 626
BseGI	GGATG	2 cut(s)	542, 610
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseNI	ACTGG	3 cut(s)	221, 652, 662
BseRI	GAGGAG	3 cut(s)	338, 341, 615
BseXI	GCAGC	1 cut(s)	809
BseYI	CCCAGC	1 cut(s)	865
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	208
BshTI	ACCGGT	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	4 cut(s)	26, 43, 164, 579
BslFI	GGGAC	2 cut(s)	25, 735
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	2 cut(s)	780, 1072
BsmFI	GGGAC	2 cut(s)	25, 735
BsnI	GGCC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	5 cut(s)	289, 787, 869, 924, 1003
BspACI	CCGC	5 cut(s)	23, 129, 132, 353, 810
BspANI	GGCC	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	3 cut(s)	621, 711, 723
BspMAI	CTGCAG	1 cut(s)	907
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	3 cut(s)	284, 782, 877
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	3 cut(s)	221, 652, 662
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	6 cut(s)	155, 209, 232, 241, 395, 626
BssMI	GATC	5 cut(s)	289, 787, 869, 924, 1003
BssSI	CACGAG	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	184
Bst2UI	CCWGG	3 cut(s)	243, 396, 699
Bst4CI	ACNGT	3 cut(s)	510, 818, 849
BstC8I	GCNNGC	2 cut(s)	99, 108
BstDEI	CTNAG	1 cut(s)	440
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	542, 610
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	5 cut(s)	292, 790, 872, 927, 1006
BstMAI	GTCTC	2 cut(s)	780, 1072
BstMBI	GATC	5 cut(s)	289, 787, 869, 924, 1003
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 98, 103, 107
BstNI	CCWGG	3 cut(s)	243, 396, 699
BstSCI	CCNGG	4 cut(s)	41, 241, 394, 697
BstSFI	CTRYAG	1 cut(s)	903
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	809
BsuI	GTATCC	2 cut(s)	522, 695
BsuRI	GGCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	542, 610
BtsIMutI	CAGTG	3 cut(s)	669, 691, 845
Cac8I	GCNNGC	2 cut(s)	99, 108
CaiI	CAGNNNCTG	1 cut(s)	690
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	3 cut(s)	152, 206, 722
CseI	GACGC	1 cut(s)	128
CspAI	ACCGGT	1 cut(s)	578
CviAII	CATG	2 cut(s)	706, 714
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	5 cut(s)	291, 789, 871, 926, 1005
DpnII	GATC	5 cut(s)	289, 787, 869, 924, 1003
EciI	GGCGGA	2 cut(s)	12, 147
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	152, 722
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	627
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	2 cut(s)	152, 722
EcoRII	CCWGG	3 cut(s)	241, 394, 697
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	709, 717
FaiI	YATR	9 cut(s)	333, 335, 502, 707, 715, 786, 888, 932, 1023
FaqI	GGGAC	2 cut(s)	25, 735
FatI	CATG	2 cut(s)	705, 713
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	1003
Fnu4HI	GCNGC	2 cut(s)	130, 823
FokI	GGATG	2 cut(s)	529, 617
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	130, 823
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	2 cut(s)	130, 823
GsaI	CCCAGC	1 cut(s)	869
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	4 cut(s)	26, 43, 164, 579
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	709, 717
HinfI	GANTC	6 cut(s)	46, 220, 237, 421, 469, 749
HpaII	CCGG	4 cut(s)	26, 43, 164, 579
HphI	GGTGA	1 cut(s)	1087
Hpy166II	GTNNAC	3 cut(s)	449, 695, 1051
Hpy188I	TCNGA	4 cut(s)	319, 527, 874, 1071
Hpy188III	TCNNGA	6 cut(s)	184, 566, 629, 741, 833, 1016
Hpy8I	GTNNAC	3 cut(s)	449, 695, 1051
Hpy99I	CGWCG	3 cut(s)	122, 862, 1017
HpyAV	CCTTC	4 cut(s)	522, 810, 967, 988
HpyCH4III	ACNGT	3 cut(s)	510, 818, 849
HpyCH4IV	ACGT	2 cut(s)	271, 445
HpyCH4V	TGCA	5 cut(s)	54, 71, 347, 825, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 98, 103, 107
HpyF3I	CTNAG	1 cut(s)	440
HpySE526I	ACGT	2 cut(s)	271, 445
Hsp92II	CATG	2 cut(s)	709, 717
Ksp22I	TGATCA	1 cut(s)	1003
Kzo9I	GATC	5 cut(s)	289, 787, 869, 924, 1003
LmnI	GCTCC	6 cut(s)	28, 166, 328, 619, 631, 715
Lsp1109I	GCAGC	1 cut(s)	809
LweI	GCATC	2 cut(s)	551, 746
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	2 cut(s)	271, 445
MaeIII	GTNAC	1 cut(s)	812
MalI	GATC	5 cut(s)	291, 789, 871, 926, 1005
MboI	GATC	5 cut(s)	289, 787, 869, 924, 1003
MboII	GAAGA	5 cut(s)	478, 581, 584, 761, 891
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	3 cut(s)	764, 920, 1034
MlyI	GAGTC	1 cut(s)	743
MseI	TTAA	3 cut(s)	417, 587, 1088
MspI	CCGG	4 cut(s)	26, 43, 164, 579
MspR9I	CCNGG	4 cut(s)	43, 243, 396, 699
MvaI	CCWGG	3 cut(s)	243, 396, 699
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	89, 98, 103, 107
NciI	CCSGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	5 cut(s)	289, 787, 869, 924, 1003
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	709, 717
NlaIV	GGNNCC	3 cut(s)	621, 711, 723
NmeAIII	GCCGAG	2 cut(s)	127, 234
NmuCI	GTSAC	1 cut(s)	812
PfeI	GAWTC	5 cut(s)	46, 220, 237, 421, 469
PfoI	TCCNGGA	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	131, 824
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
PpuMI	RGGWCCY	2 cut(s)	152, 722
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	2 cut(s)	152, 722
Psp6I	CCWGG	3 cut(s)	241, 394, 697
PspFI	CCCAGC	1 cut(s)	865
PspGI	CCWGG	3 cut(s)	241, 394, 697
PspN4I	GGNNCC	3 cut(s)	621, 711, 723
PspPI	GGNCC	3 cut(s)	152, 206, 722
PspPPI	RGGWCCY	2 cut(s)	152, 722
PstI	CTGCAG	1 cut(s)	907
PstNI	CAGNNNCTG	1 cut(s)	690
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	417, 587, 1088
SatI	GCNGC	2 cut(s)	130, 823
Sau3AI	GATC	5 cut(s)	289, 787, 869, 924, 1003
Sau96I	GGNCC	3 cut(s)	152, 206, 722
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	4 cut(s)	43, 243, 396, 699
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	551, 746
SfcI	CTRYAG	1 cut(s)	903
SinI	GGWCC	2 cut(s)	152, 722
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	3 cut(s)	764, 920, 1034
SsiI	CCGC	5 cut(s)	23, 129, 132, 353, 810
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	41, 241, 394, 697
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	3 cut(s)	510, 818, 849
TaiI	ACGT	2 cut(s)	274, 448
TaqI	TCGA	3 cut(s)	288, 670, 1031
TasI	AATT	3 cut(s)	764, 920, 1034
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	5 cut(s)	46, 220, 237, 421, 469
Tru1I	TTAA	3 cut(s)	417, 587, 1088
Tru9I	TTAA	3 cut(s)	417, 587, 1088
TscAI	CASTG	3 cut(s)	669, 691, 852
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	1 cut(s)	822
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	2 cut(s)	17, 624
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	669, 691, 852
VpaK11BI	GGWCC	2 cut(s)	152, 722
XapI	RAATTY	2 cut(s)	764, 1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	459
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.