Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004250.1

Orthogroup ID

OG0011821

Physical Location & Seq

Genomic Coordinates Forward (+)

117077 .. 117871

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004250.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgaaggaagatagcagcctagagagatcaaaggcatcctctgaagaaaccgtgtcagctgggaatcttagttcagtcaggactcctgaaggaagagaagtcttgataatagacaacagctttaaccagttagatggaagatgtcaaacagaggacggtgttgctgtcactgaattgaaagataattcaactcttgtttctgaattaaaagaagagtctaccctctgtcgtccagtcgcacgagtcagtgcttttagtgcttacaacccttcaaatggtccatcaaatggctccattgttccaaggccagtcccaattcatggccctttggtccaaacatctaatctagattttgacttctgcaactctcttgaaggtgactgtaatgagcctatggttcctctgcgttgtggtcacggttgctgtgatcgaagtggggggcattttcaaagctcattgttggggcctgagtttattgactatgaggagcctccctccttctccagcccggaattcatctcttgtgctacagatgtgaacaatattgcatggattaagagtggccttgagaatcgtgaaacaatgagagtggcagagaatgtagcaagccagagattctcacaaggggcggctgctactccgcaaatggggtattatgaaatgaatatgatgaatggccatatgcgcttcgtggagggacagaacaggctaatgggtatgatgacagaaatgctttcaaccccaatgccgagacaaacttttgcaatgccaactgaagttaagggattgagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

264

Amino Acids

28.88

Weight (kDa)

4.73

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39880 AT3G55730
fragaria_vesca	FvH4_7g23750
malus_domestica	MD01G1144700.v1.1 MD07G1211300.v1.1
prunus_persica	Prupe.2G244100_v2.0.a1
pyrus_communis	pycom01g16430 pycom07g19480
rosa_chinensis	RchiOBHm_Chr1g0369061
rosa_laevigata	RLG00000027160
rosa_multiflora	Rmu_sc0004250.1_g000025 Rmu_sc0008155.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288040
rosa_rugosa	Rorug01G0347700
rosa_samantha	Rh1AG354500 Rh1BG317800 Rh1CG332300 Rh1DG348700
rosa_wichuraiana	Rw1G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	287, 320
AccI	GTMKAC	1 cut(s)	218
AciI	CCGC	2 cut(s)	629, 641
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	3 cut(s)	63, 108, 795
AfiI	CCNNNNNNNGG	4 cut(s)	275, 287, 320, 647
AgsI	TTSAA	6 cut(s)	178, 189, 273, 374, 449, 738
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	4 cut(s)	59, 120, 453, 792
AluI	AGCT	4 cut(s)	59, 120, 453, 792
Alw26I	GTCTC	1 cut(s)	745
AoxI	GGCC	5 cut(s)	305, 322, 464, 562, 676
ApeKI	GCWGC	2 cut(s)	15, 632
ApoI	RAATTY	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	4 cut(s)	278, 323, 331, 464
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	278, 331
BalI	TGGCCA	1 cut(s)	678
BauI	CACGAG	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	27, 619
BccI	CCATC	2 cut(s)	128, 289
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	745
BfaI	CTAG	3 cut(s)	20, 347, 793
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	3 cut(s)	16, 630, 633
BlsI	GCNGC	3 cut(s)	17, 631, 634
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	2 cut(s)	278, 331
BmgT120I	GGNCC	4 cut(s)	278, 323, 331, 464
BmiI	GGNNCC	4 cut(s)	292, 399, 465, 489
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 287, 320, 647
Bse1I	ACTGG	3 cut(s)	127, 233, 308
Bse3DI	GCAATG	1 cut(s)	771
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	4 cut(s)	275, 287, 320, 647
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	3 cut(s)	127, 233, 308
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	27, 619
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	5 cut(s)	307, 324, 466, 564, 678
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	2 cut(s)	296, 711
BslI	CCNNNNNNNGG	4 cut(s)	275, 287, 320, 647
BsmAI	GTCTC	1 cut(s)	745
BsmFI	GGGAC	2 cut(s)	296, 711
BsnI	GGCC	5 cut(s)	307, 324, 466, 564, 678
Bsp143I	GATC	2 cut(s)	26, 427
BspACI	CCGC	2 cut(s)	629, 641
BspANI	GGCC	5 cut(s)	307, 324, 466, 564, 678
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	4 cut(s)	292, 399, 465, 489
BsrDI	GCAATG	1 cut(s)	771
BsrI	ACTGG	3 cut(s)	127, 233, 308
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	2 cut(s)	26, 427
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	240
Bst4CI	ACNGT	4 cut(s)	52, 158, 383, 419
Bst6I	CTCTTC	2 cut(s)	88, 207
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	2 cut(s)	68, 468
BstF5I	GGATG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	2 cut(s)	29, 430
BstMAI	GTCTC	1 cut(s)	745
BstMBI	GATC	2 cut(s)	26, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 684
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	27, 619
BstXI	CCANNNNNNTGG	1 cut(s)	134
BsuRI	GGCC	5 cut(s)	307, 324, 466, 564, 678
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	2 cut(s)	168, 253
Cac8I	GCNNGC	1 cut(s)	607
CfoI	GCGC	1 cut(s)	687
Cfr13I	GGNCC	4 cut(s)	278, 323, 331, 464
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	2 cut(s)	320, 549
DdeI	CTNAG	2 cut(s)	68, 468
DpnI	GATC	2 cut(s)	28, 429
DpnII	GATC	2 cut(s)	26, 427
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	88, 207
EarI	CTCTTC	2 cut(s)	88, 207
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	278, 331
Eco57I	CTGAAG	3 cut(s)	63, 108, 795
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	2 cut(s)	323, 552
FaiI	YATR	9 cut(s)	321, 395, 483, 550, 657, 668, 681, 683, 719
FaqI	GGGAC	2 cut(s)	296, 711
FatI	CATG	2 cut(s)	319, 548
FauNDI	CATATG	1 cut(s)	681
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	3 cut(s)	16, 630, 633
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	16, 630, 633
FspBI	CTAG	3 cut(s)	20, 347, 793
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	3 cut(s)	16, 630, 633
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	487
HaeIII	GGCC	5 cut(s)	307, 324, 466, 564, 678
HapII	CCGG	1 cut(s)	509
HhaI	GCGC	1 cut(s)	687
Hin1II	CATG	2 cut(s)	323, 552
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HinfI	GANTC	6 cut(s)	64, 82, 215, 243, 571, 615
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	219, 538
Hpy188I	TCNGA	2 cut(s)	43, 202
Hpy188III	TCNNGA	6 cut(s)	79, 86, 103, 347, 371, 575
Hpy8I	GTNNAC	2 cut(s)	219, 538
HpyAV	CCTTC	4 cut(s)	83, 279, 368, 508
HpyCH4III	ACNGT	4 cut(s)	52, 158, 383, 419
HpyCH4V	TGCA	3 cut(s)	363, 548, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 684
HpyF3I	CTNAG	2 cut(s)	68, 468
Hsp92II	CATG	2 cut(s)	323, 552
HspAI	GCGC	1 cut(s)	685
Kzo9I	GATC	2 cut(s)	26, 427
LmnI	GCTCC	2 cut(s)	296, 487
Lsp1109I	GCAGC	2 cut(s)	27, 619
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	3 cut(s)	20, 347, 793
MaeIII	GTNAC	3 cut(s)	166, 377, 413
MalI	GATC	2 cut(s)	28, 429
MboI	GATC	2 cut(s)	26, 427
MboII	GAAGA	5 cut(s)	20, 56, 105, 150, 224
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	5 cut(s)	173, 184, 203, 315, 512
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	3 cut(s)	76, 224, 252
MnlI	CCTC	8 cut(s)	49, 145, 233, 411, 478, 501, 505, 688
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	4 cut(s)	123, 206, 555, 780
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	257, 684
NciI	CCSGG	1 cut(s)	509
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	2 cut(s)	26, 427
NlaIII	CATG	2 cut(s)	323, 552
NlaIV	GGNNCC	4 cut(s)	292, 399, 465, 489
NmeAIII	GCCGAG	1 cut(s)	774
NmuCI	GTSAC	3 cut(s)	166, 377, 413
PfeI	GAWTC	3 cut(s)	64, 571, 615
PflMI	CCANNNNNTGG	2 cut(s)	287, 320
PkrI	GCNGC	3 cut(s)	17, 631, 634
PleI	GAGTC	3 cut(s)	76, 223, 251
PpsI	GAGTC	3 cut(s)	76, 223, 251
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	4 cut(s)	292, 399, 465, 489
PspPI	GGNCC	4 cut(s)	278, 323, 331, 464
PvuII	CAGCTG	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	123, 206, 555, 780
SatI	GCNGC	3 cut(s)	16, 630, 633
Sau3AI	GATC	2 cut(s)	26, 427
Sau96I	GGNCC	4 cut(s)	278, 323, 331, 464
SchI	GAGTC	3 cut(s)	76, 224, 252
ScrFI	CCNGG	1 cut(s)	509
SetI	ASST	5 cut(s)	61, 122, 379, 455, 794
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	278, 331
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	5 cut(s)	173, 184, 203, 315, 512
SsiI	CCGC	2 cut(s)	629, 641
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	3 cut(s)	20, 347, 793
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	4 cut(s)	52, 158, 383, 419
TaqI	TCGA	1 cut(s)	430
TasI	AATT	5 cut(s)	173, 184, 203, 315, 512
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	3 cut(s)	64, 571, 615
Tru1I	TTAA	4 cut(s)	123, 206, 555, 780
Tru9I	TTAA	4 cut(s)	123, 206, 555, 780
TscAI	CASTG	2 cut(s)	175, 253
TseFI	GTSAC	3 cut(s)	166, 377, 413
TseI	GCWGC	2 cut(s)	15, 632
Tsp45I	GTSAC	3 cut(s)	166, 377, 413
TspDTI	ATGAA	6 cut(s)	17, 308, 505, 672, 677, 686
TspRI	CASTG	2 cut(s)	175, 253
Van91I	CCANNNNNTGG	2 cut(s)	287, 320
VpaK11BI	GGWCC	2 cut(s)	278, 331
XapI	RAATTY	1 cut(s)	512
XbaI	TCTAGA	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	218
XspI	CTAG	3 cut(s)	20, 347, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.