Rw1G031300
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
59420753 .. 59423967
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G031300.1

Sequence Viewer

Length: 1101 bp
ATGACAGTCCCAAACGACGCCGCTTCCAAACTCGACAGCCACCGCGCCGAGCCGGACGCGTCATCTTCACTCGCCGATGACGGCGGTGAGGTCGCCGCTGGGAAAGTGAGGGGATCGTGGTCGCCCAAAGAGGATGAGATGCTGACTCGGCTGGTCACCCAGTTTGGCGCCAGAAACTGGAGCGTCATCGCCAGAGGAATTCCCGGCCGGTCCGGCAAGTCTTGCCGGCTCCGGTGGTGCAATCAGCTTAACCCTGGTGTAAAGCGCAAACCTTTCTCCGATGAAGAAGATCGTATTATAGTTGCAGCTCATGCCACTCATGGGAACAGATGGGCGATAATTGCAAAGCTCCTTCCAGGTAGAACAGATAATGCAATAAAGAATCACTGGAATTCTACTTTAAAGCGTGGGAGGAAGTACATCCCTCGAACTAGAAACATGAAGGAAGATAGCAGCCTAGAGAGATCAAAGGCATCCTCTGAAGAAACCGTGTCAGCTGGGAATCTTAGTTCAGTCAGGACTCCTGAAGGAAGAGAAGTCTTGATAATAGACAACAGCTTTAACCAGTTAGATGGAAGATGTCAAACAGAGGACGGTGTTGCTGTCACTGAATTGAAAGATAATTCAACTCTTGTTTCTGAATTAAAAGAAGAGTCTACCCTCTGTCGTCCAGTCGCACGAGTCAGTGCTTTTAGTGCTTACAACCCTTCAAATGGTCCATCAAATGGCTCCATTGTTCCAAGGCCAGTCCCAATTCATGGCCCTTTGGTCCAAACATCTAATCTAGATTTTGACTTCTGCAACTCTCTTGAAGGTGACTGTAATGAGCCTATGGTTCCTCTGCGTTGTGGTCACGGTTGCTGTGATCGAAGCGGGGGGCATTTTCAAAGCTCATTGTTGGGGCCTGAGTTTATTGACTATGAGGAGCCTCCCTCCTTCTCCAGCCCGGAATTCATCTCTTGTGCTACAGATGTGAACAATATTGCATGGATTAAGAGTGGCCTTGAGAATCGTGAAACAATGAGAGTGGCAGAGAATGTAGCAAGCCAGAGATTCTCACAGGGGCGGCTGCTACTCCGCAAATGGGGTATTATGAAATGA

Protein Analysis

366

Amino Acids

40.24

Weight (kDa)

7.56

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 83 4.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 40 - 97 6.6e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 89 - 133 1.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 142 1.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011821)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 3 cut(s) 177, 725, 758
AccI GTMKAC 1 cut(s) 656
AccII CGCG 2 cut(s) 45, 59
AciI CCGC 7 cut(s) 21, 43, 84, 96, 873, 1066, 1078
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 3 cut(s) 198, 391, 950
AcuI CTGAAG 2 cut(s) 501, 546
AcyI GRCGYC 2 cut(s) 18, 168
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 6 cut(s) 177, 321, 713, 725, 758, 1084
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 5 cut(s) 616, 627, 711, 812, 887
AjnI CCWGG 2 cut(s) 253, 355
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 6 cut(s) 247, 308, 349, 497, 558, 891
AluI AGCT 6 cut(s) 247, 308, 349, 497, 558, 891
AlwI GGATC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 177
AoxI GGCC 5 cut(s) 205, 743, 760, 902, 1000
ApeKI GCWGC 3 cut(s) 305, 453, 1069
ApoI RAATTY 3 cut(s) 198, 391, 950
AspLEI GCGC 3 cut(s) 47, 170, 267
AspS9I GGNCC 5 cut(s) 210, 716, 761, 769, 902
AsuC2I CCSGG 2 cut(s) 204, 947
AsuHPI GGTGA 3 cut(s) 98, 148, 827
AvaII GGWCC 3 cut(s) 210, 716, 769
BanI GGYRCC 1 cut(s) 167
BauI CACGAG 1 cut(s) 678
BbvI GCAGC 3 cut(s) 317, 465, 1056
BccI CCATC 3 cut(s) 324, 566, 727
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 255, 357
BcnI CCSGG 2 cut(s) 204, 947
BfaI CTAG 3 cut(s) 432, 458, 785
BfmI CTRYAG 1 cut(s) 966
BfoI RGCGCY 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 213
BisI GCNGC 6 cut(s) 21, 96, 306, 454, 1067, 1070
BlsI GCNGC 6 cut(s) 22, 97, 307, 455, 1068, 1071
Bme1390I CCNGG 4 cut(s) 204, 255, 357, 947
Bme18I GGWCC 3 cut(s) 210, 716, 769
BmgT120I GGNCC 5 cut(s) 210, 716, 761, 769, 902
BmiI GGNNCC 6 cut(s) 169, 230, 730, 837, 903, 927
BmrFI CCNGG 4 cut(s) 204, 255, 357, 947
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 129, 482
BmuI ACTGGG 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 917, 949
BpmI CTGGAG 2 cut(s) 199, 925
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 2 cut(s) 204, 947
BsaHI GRCGYC 2 cut(s) 18, 168
BsaJI CCNNGG 2 cut(s) 253, 740
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 321, 713, 725, 758, 1084
Bse118I RCCGGY 2 cut(s) 207, 225
Bse1I ACTGG 6 cut(s) 160, 182, 392, 565, 671, 746
BseBI CCWGG 2 cut(s) 255, 357
BseDI CCNNGG 2 cut(s) 253, 740
BseGI GGATG 3 cut(s) 139, 420, 473
BseLI CCNNNNNNNGG 6 cut(s) 177, 321, 713, 725, 758, 1084
BseMII CTCAG 1 cut(s) 897
BseNI ACTGG 6 cut(s) 160, 182, 392, 565, 671, 746
BseRI GAGGAG 1 cut(s) 938
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 3 cut(s) 317, 465, 1056
BseYI CCCAGC 2 cut(s) 98, 497
Bsh1236I CGCG 2 cut(s) 45, 59
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 5 cut(s) 207, 745, 762, 904, 1002
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 208
BsiSI CCGG 7 cut(s) 53, 204, 208, 213, 226, 232, 947
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 6 cut(s) 177, 321, 713, 725, 758, 1084
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 5 cut(s) 207, 745, 762, 904, 1002
Bsp143I GATC 4 cut(s) 113, 289, 464, 865
BspACI CCGC 7 cut(s) 21, 43, 84, 96, 873, 1066, 1078
BspANI GGCC 5 cut(s) 207, 745, 762, 904, 1002
BspCNI CTCAG 1 cut(s) 898
BspFNI CGCG 2 cut(s) 45, 59
BspLI GGNNCC 6 cut(s) 169, 230, 730, 837, 903, 927
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 167
BsrFI RCCGGY 2 cut(s) 207, 225
BsrI ACTGG 6 cut(s) 160, 182, 392, 565, 671, 746
BssAI RCCGGY 2 cut(s) 207, 225
BssECI CCNNGG 2 cut(s) 253, 740
BssMI GATC 4 cut(s) 113, 289, 464, 865
BssNI GRCGYC 2 cut(s) 18, 168
BssSI CACGAG 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 740
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 2 cut(s) 255, 357
Bst4CI ACNGT 5 cut(s) 7, 490, 596, 821, 857
Bst6I CTCTTC 2 cut(s) 526, 645
BstACI GRCGYC 2 cut(s) 18, 168
BstAPI GCANNNNNTGC 2 cut(s) 222, 311
BstC8I GCNNGC 2 cut(s) 227, 1045
BstDEI CTNAG 2 cut(s) 506, 906
BstEII GGTNACC 1 cut(s) 154
BstF5I GGATG 3 cut(s) 139, 420, 473
BstFNI CGCG 2 cut(s) 45, 59
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 3 cut(s) 47, 170, 267
BstKTI GATC 4 cut(s) 116, 292, 467, 868
BstMBI GATC 4 cut(s) 113, 289, 464, 865
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 6 cut(s) 148, 213, 222, 311, 341, 695
BstNI CCWGG 2 cut(s) 255, 357
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 4 cut(s) 202, 253, 355, 945
BstSFI CTRYAG 1 cut(s) 966
BstUI CGCG 2 cut(s) 45, 59
BstV1I GCAGC 3 cut(s) 317, 465, 1056
BstXI CCANNNNNNTGG 1 cut(s) 572
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 5 cut(s) 207, 745, 762, 904, 1002
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 139, 420, 473
BtsIMutI CAGTG 3 cut(s) 385, 606, 691
Cac8I GCNNGC 2 cut(s) 227, 1045
CaiI CAGNNNCTG 1 cut(s) 177
CfoI GCGC 3 cut(s) 47, 170, 267
Cfr10I RCCGGY 2 cut(s) 207, 225
Cfr13I GGNCC 5 cut(s) 210, 716, 761, 769, 902
CpoI CGGWCCG 1 cut(s) 210
CseI GACGC 4 cut(s) 26, 48, 65, 172
Csp6I GTAC 1 cut(s) 418
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 5 cut(s) 311, 320, 439, 758, 987
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 506, 906
DinI GGCGCC 1 cut(s) 169
DpnI GATC 4 cut(s) 115, 291, 466, 867
DpnII GATC 4 cut(s) 113, 289, 464, 865
DraI TTTAAA 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 526, 645
EarI CTCTTC 2 cut(s) 526, 645
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 740
Eco47I GGWCC 3 cut(s) 210, 716, 769
Eco52I CGGCCG 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 501, 546
Eco91I GGTNACC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 902
EcoO65I GGTNACC 1 cut(s) 154
EcoRI GAATTC 3 cut(s) 198, 391, 950
EcoRII CCWGG 2 cut(s) 253, 355
EcoT14I CCWWGG 1 cut(s) 740
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 740
FaeI CATG 5 cut(s) 314, 323, 442, 761, 990
FaiI YATR 9 cut(s) 299, 312, 321, 440, 759, 833, 921, 988, 1094
FaqI GGGAC 1 cut(s) 734
FatI CATG 5 cut(s) 310, 319, 438, 757, 986
FauI CCCGC 1 cut(s) 866
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 6 cut(s) 21, 96, 306, 454, 1067, 1070
FokI GGATG 3 cut(s) 146, 407, 460
Fsp4HI GCNGC 6 cut(s) 21, 96, 306, 454, 1067, 1070
FspBI CTAG 3 cut(s) 432, 458, 785
GlaI GCGC 3 cut(s) 46, 169, 266
GluI GCNGC 6 cut(s) 21, 96, 306, 454, 1067, 1070
GsaI CCCAGC 2 cut(s) 102, 501
GsuI CTGGAG 2 cut(s) 199, 925
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 5 cut(s) 207, 745, 762, 904, 1002
HapII CCGG 7 cut(s) 53, 204, 208, 213, 226, 232, 947
HgaI GACGC 4 cut(s) 26, 48, 65, 172
HhaI GCGC 3 cut(s) 47, 170, 267
Hin1I GRCGYC 2 cut(s) 18, 168
Hin1II CATG 5 cut(s) 314, 323, 442, 761, 990
Hin6I GCGC 3 cut(s) 45, 168, 265
HinP1I GCGC 3 cut(s) 45, 168, 265
HinfI GANTC 8 cut(s) 145, 382, 502, 520, 653, 681, 1009, 1053
HpaII CCGG 7 cut(s) 53, 204, 208, 213, 226, 232, 947
HphI GGTGA 3 cut(s) 98, 148, 827
Hpy166II GTNNAC 2 cut(s) 657, 976
Hpy188I TCNGA 3 cut(s) 280, 481, 640
Hpy188III TCNNGA 6 cut(s) 517, 524, 541, 785, 809, 1013
Hpy8I GTNNAC 2 cut(s) 657, 976
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 6 cut(s) 362, 436, 521, 717, 806, 946
HpyCH4III ACNGT 5 cut(s) 7, 490, 596, 821, 857
HpyCH4V TGCA 6 cut(s) 240, 305, 344, 374, 801, 986
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 213, 222, 311, 341, 695
HpyF3I CTNAG 2 cut(s) 506, 906
Hsp92I GRCGYC 2 cut(s) 18, 168
Hsp92II CATG 5 cut(s) 314, 323, 442, 761, 990
HspAI GCGC 3 cut(s) 45, 168, 265
KasI GGCGCC 1 cut(s) 167
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Kzo9I GATC 4 cut(s) 113, 289, 464, 865
LmnI GCTCC 5 cut(s) 180, 234, 354, 734, 925
Lsp1109I GCAGC 3 cut(s) 317, 465, 1056
LweI GCATC 2 cut(s) 129, 482
MaeI CTAG 3 cut(s) 432, 458, 785
MaeIII GTNAC 4 cut(s) 154, 604, 815, 851
MalI GATC 4 cut(s) 115, 291, 466, 867
MboI GATC 4 cut(s) 113, 289, 464, 865
MboII GAAGA 8 cut(s) 57, 296, 299, 458, 494, 543, 588, 662
MluCI AATT 8 cut(s) 198, 339, 391, 611, 622, 641, 753, 950
MluI ACGCGT 1 cut(s) 57
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 4 cut(s) 139, 514, 662, 690
MroNI GCCGGC 1 cut(s) 225
MseI TTAA 5 cut(s) 249, 401, 561, 644, 993
MspA1I CMGCKG 2 cut(s) 98, 497
MspI CCGG 7 cut(s) 53, 204, 208, 213, 226, 232, 947
MspR9I CCNGG 4 cut(s) 204, 255, 357, 947
MvaI CCWGG 2 cut(s) 255, 357
MvnI CGCG 2 cut(s) 45, 59
MwoI GCNNNNNNNGC 6 cut(s) 148, 213, 222, 311, 341, 695
NaeI GCCGGC 1 cut(s) 227
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 2 cut(s) 204, 947
NdeII GATC 4 cut(s) 113, 289, 464, 865
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 5 cut(s) 314, 323, 442, 761, 990
NlaIV GGNNCC 6 cut(s) 169, 230, 730, 837, 903, 927
NmeAIII GCCGAG 2 cut(s) 73, 127
NmuCI GTSAC 4 cut(s) 154, 604, 815, 851
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 4 cut(s) 382, 502, 1009, 1053
PflMI CCANNNNNTGG 3 cut(s) 177, 725, 758
PkrI GCNGC 6 cut(s) 22, 97, 307, 455, 1068, 1071
PleI GAGTC 4 cut(s) 139, 514, 661, 689
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 4 cut(s) 139, 514, 661, 689
Psp6I CCWGG 2 cut(s) 253, 355
PspEI GGTNACC 1 cut(s) 154
PspFI CCCAGC 2 cut(s) 98, 497
PspGI CCWGG 2 cut(s) 253, 355
PspN4I GGNNCC 6 cut(s) 169, 230, 730, 837, 903, 927
PspPI GGNCC 5 cut(s) 210, 716, 761, 769, 902
PstNI CAGNNNCTG 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SaqAI TTAA 5 cut(s) 249, 401, 561, 644, 993
SatI GCNGC 6 cut(s) 21, 96, 306, 454, 1067, 1070
Sau3AI GATC 4 cut(s) 113, 289, 464, 865
Sau96I GGNCC 5 cut(s) 210, 716, 761, 769, 902
SchI GAGTC 4 cut(s) 139, 514, 662, 690
ScrFI CCNGG 4 cut(s) 204, 255, 357, 947
SfaNI GCATC 2 cut(s) 129, 482
SfcI CTRYAG 1 cut(s) 966
SfoI GGCGCC 1 cut(s) 169
SinI GGWCC 3 cut(s) 210, 716, 769
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 8 cut(s) 198, 339, 391, 611, 622, 641, 753, 950
SsiI CCGC 7 cut(s) 21, 43, 84, 96, 873, 1066, 1078
SspDI GGCGCC 1 cut(s) 167
SspI AATATT 1 cut(s) 982
SspMI CTAG 3 cut(s) 432, 458, 785
StyD4I CCNGG 4 cut(s) 202, 253, 355, 945
StyI CCWWGG 1 cut(s) 740
TaaI ACNGT 5 cut(s) 7, 490, 596, 821, 857
TaqI TCGA 3 cut(s) 33, 427, 868
TasI AATT 8 cut(s) 198, 339, 391, 611, 622, 641, 753, 950
TatI WGTACW 1 cut(s) 417
TauI GCSGC 3 cut(s) 23, 98, 1069
TfiI GAWTC 4 cut(s) 382, 502, 1009, 1053
Tru1I TTAA 5 cut(s) 249, 401, 561, 644, 993
Tru9I TTAA 5 cut(s) 249, 401, 561, 644, 993
TscAI CASTG 3 cut(s) 392, 613, 691
TseFI GTSAC 4 cut(s) 154, 604, 815, 851
TseI GCWGC 3 cut(s) 305, 453, 1069
Tsp45I GTSAC 4 cut(s) 154, 604, 815, 851
TspDTI ATGAA 4 cut(s) 297, 455, 746, 943
TspRI CASTG 3 cut(s) 392, 613, 691
Van91I CCANNNNNTGG 3 cut(s) 177, 725, 758
VpaK11BI GGWCC 3 cut(s) 210, 716, 769
XapI RAATTY 3 cut(s) 198, 391, 950
XbaI TCTAGA 1 cut(s) 784
XmiI GTMKAC 1 cut(s) 656
XspI CTAG 3 cut(s) 432, 458, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.