Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011821

Physical Location & Seq

Genomic Coordinates Reverse (-)

20681827 .. 20684063

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAAGGAGAAACTCATCAATCGGAGCCGTTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTTGCTGAGTTAGCTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGGATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCTTACGAAGCTTGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTCTGGTAAATCTTGTCGATTGCGTTGGTGTAATCAGCTTGACCCTTGTCTCAAGCGTAAACCTTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATGGGCAGTGATTGCGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAACTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGATGGCTAATTCAGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTCAAAACAACAGTTGCCTCAAGGAGATATCAATTCCTCCCCGCCAAAGCCTCCACAAGTGAGTGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCAAGAACAACAAGAACAAGCTCCACCGGTAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCGCGTTGGTGCATTCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAGAGACTACAATATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAAATTTCTACAATCTCTTTGTGATGAACCTCAAATCCCGTCAAAATGTGGTCACGGCTGCTCTACTCTTCCAGCTGAAACTAAGTTCTCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGATTATGAAGAGCCTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAACAACATTGCATGGATAAAGAGTGGCCTTGACAATGCTGTTGTCAGAGAAGCAGAACAGAGTTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCCTAGACAAGATTTCTTCTGTGCAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

399

Amino Acids

43.54

Weight (kDa)

5.38

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	56 - 102	4.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	59 - 118	1.4e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	108 - 152	1.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	111 - 157	1.7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39880 AT3G55730
fragaria_vesca	FvH4_7g23750
malus_domestica	MD01G1144700.v1.1 MD07G1211300.v1.1
prunus_persica	Prupe.2G244100_v2.0.a1
pyrus_communis	pycom01g16430 pycom07g19480
rosa_chinensis	RchiOBHm_Chr1g0369061
rosa_laevigata	RLG00000027160
rosa_multiflora	Rmu_sc0004250.1_g000025 Rmu_sc0008155.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288040
rosa_rugosa	Rorug01G0347700
rosa_samantha	Rh1AG354500 Rh1BG317800 Rh1CG332300 Rh1DG348700
rosa_wichuraiana	Rw1G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1134
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	3 cut(s)	194, 371, 750
AclI	AACGTT	1 cut(s)	711
AclWI	GGATC	2 cut(s)	71, 1133
AcsI	RAATTY	1 cut(s)	869
AfiI	CCNNNNNNNGG	2 cut(s)	60, 824
AflIII	ACRYGT	1 cut(s)	729
AgeI	ACCGGT	1 cut(s)	697
AgsI	TTSAA	5 cut(s)	114, 839, 1015, 1048, 1114
AjnI	CCWGG	1 cut(s)	259
AloI	GAACNNNNNNTCC	2 cut(s)	885, 917
AluBI	AGCT	9 cut(s)	88, 101, 208, 304, 653, 692, 845, 941, 1197
AluI	AGCT	9 cut(s)	88, 101, 208, 304, 653, 692, 845, 941, 1197
Alw26I	GTCTC	2 cut(s)	320, 795
AlwI	GGATC	2 cut(s)	71, 1133
AoxI	GGCC	1 cut(s)	1072
ApeKI	GCWGC	5 cut(s)	71, 101, 650, 842, 924
ApoI	RAATTY	1 cut(s)	869
AsiGI	ACCGGT	1 cut(s)	697
AspS9I	GGNCC	4 cut(s)	170, 224, 827, 974
AvaII	GGWCC	4 cut(s)	170, 224, 827, 974
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	5 cut(s)	58, 88, 662, 854, 911
BccI	CCATC	3 cut(s)	493, 571, 1111
BceAI	ACGGC	2 cut(s)	13, 937
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	320, 795
BfaI	CTAG	2 cut(s)	221, 1170
BfmI	CTRYAG	1 cut(s)	1032
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	8 cut(s)	72, 102, 118, 133, 136, 651, 843, 925
BlsI	GCNGC	8 cut(s)	73, 103, 119, 134, 137, 652, 844, 926
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	4 cut(s)	170, 224, 827, 974
BmgT120I	GGNCC	4 cut(s)	170, 224, 827, 974
BmiI	GGNNCC	3 cut(s)	27, 828, 975
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	50, 1155
BoxI	GACNNNNGTC	2 cut(s)	175, 312
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	66, 126
BpuEI	CTTGAG	4 cut(s)	302, 570, 648, 657
BsaAI	YACGTR	1 cut(s)	959
BsaJI	CCNNGG	4 cut(s)	173, 227, 259, 741
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 824
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	418, 1162
Bse3DI	GCAATG	1 cut(s)	1053
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	173, 227, 259, 741
BseGI	GGATG	2 cut(s)	504, 563
BseLI	CCNNNNNNNGG	2 cut(s)	60, 824
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	2 cut(s)	84, 969
BseNI	ACTGG	2 cut(s)	418, 1162
BseRI	GAGGAG	2 cut(s)	156, 159
BseXI	GCAGC	5 cut(s)	58, 88, 662, 854, 911
Bsh1236I	CGCG	3 cut(s)	194, 371, 750
BshFI	GGCC	1 cut(s)	1074
BshTI	ACCGGT	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	2 cut(s)	840, 987
BslI	CCNNNNNNNGG	2 cut(s)	60, 824
BsmAI	GTCTC	2 cut(s)	320, 795
BsmFI	GGGAC	2 cut(s)	840, 987
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	1 cut(s)	1074
Bsp143I	GATC	5 cut(s)	63, 243, 346, 475, 1138
BspANI	GGCC	1 cut(s)	1074
BspCNI	CTCAG	2 cut(s)	85, 970
BspFNI	CGCG	3 cut(s)	194, 371, 750
BspLI	GGNNCC	3 cut(s)	27, 828, 975
BspPI	GGATC	2 cut(s)	71, 1133
BspQI	GCTCTTC	1 cut(s)	990
BsrDI	GCAATG	1 cut(s)	1053
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	418, 1162
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	4 cut(s)	173, 227, 259, 741
BssMI	GATC	5 cut(s)	63, 243, 346, 475, 1138
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	408, 579, 831
Bst6I	CTCTTC	3 cut(s)	639, 939, 990
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	959
BstC8I	GCNNGC	2 cut(s)	90, 748
BstDEI	CTNAG	4 cut(s)	93, 458, 948, 978
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	2 cut(s)	504, 563
BstFNI	CGCG	3 cut(s)	194, 371, 750
BstKTI	GATC	5 cut(s)	66, 246, 349, 478, 1141
BstMAI	GTCTC	2 cut(s)	320, 795
BstMBI	GATC	5 cut(s)	63, 243, 346, 475, 1138
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 89, 98, 398
BstNI	CCWGG	1 cut(s)	261
BstPAI	GACNNNNGTC	2 cut(s)	175, 312
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	1032
BstUI	CGCG	3 cut(s)	194, 371, 750
BstV1I	GCAGC	5 cut(s)	58, 88, 662, 854, 911
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	1074
BtgI	CCRYGG	1 cut(s)	741
BtsCI	GGATG	2 cut(s)	504, 563
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	73, 399
Cac8I	GCNNGC	2 cut(s)	90, 748
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	4 cut(s)	170, 224, 827, 974
CseI	GACGC	1 cut(s)	200
CspAI	ACCGGT	1 cut(s)	697
CviAII	CATG	2 cut(s)	819, 1059
DdeI	CTNAG	4 cut(s)	93, 458, 948, 978
DpnI	GATC	5 cut(s)	65, 245, 348, 477, 1140
DpnII	GATC	5 cut(s)	63, 243, 346, 475, 1138
Eam1104I	CTCTTC	3 cut(s)	639, 939, 990
EarI	CTCTTC	3 cut(s)	639, 939, 990
EciI	GGCGGA	2 cut(s)	98, 153
Eco130I	CCWWGG	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	595
Eco47I	GGWCC	4 cut(s)	170, 224, 827, 974
EcoO109I	RGGNCCY	2 cut(s)	170, 974
EcoRII	CCWGG	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	2 cut(s)	822, 1062
FaiI	YATR	9 cut(s)	353, 481, 771, 812, 820, 993, 1034, 1060, 1134
FaqI	GGGAC	2 cut(s)	840, 987
FatI	CATG	2 cut(s)	818, 1058
FauI	CCCGC	1 cut(s)	615
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	8 cut(s)	72, 102, 118, 133, 136, 651, 843, 925
FokI	GGATG	2 cut(s)	511, 550
Fsp4HI	GCNGC	8 cut(s)	72, 102, 118, 133, 136, 651, 843, 925
FspBI	CTAG	2 cut(s)	221, 1170
GluI	GCNGC	8 cut(s)	72, 102, 118, 133, 136, 651, 843, 925
GsuI	CTGGAG	2 cut(s)	66, 126
HaeIII	GGCC	1 cut(s)	1074
HapII	CCGG	1 cut(s)	698
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	822, 1062
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	6 cut(s)	50, 110, 255, 835, 854, 1146
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	698
Hpy166II	GTNNAC	5 cut(s)	180, 326, 376, 411, 1155
Hpy188I	TCNGA	4 cut(s)	25, 55, 337, 1094
Hpy188III	TCNNGA	4 cut(s)	45, 436, 665, 674
Hpy8I	GTNNAC	5 cut(s)	180, 326, 376, 411, 1155
HpyAV	CCTTC	2 cut(s)	53, 1011
HpyCH4III	ACNGT	3 cut(s)	408, 579, 831
HpyCH4IV	ACGT	4 cut(s)	463, 711, 729, 958
HpyCH4V	TGCA	3 cut(s)	758, 1058, 1190
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 89, 98, 398
HpyF3I	CTNAG	4 cut(s)	93, 458, 948, 978
HpySE526I	ACGT	4 cut(s)	463, 711, 729, 958
Hsp92II	CATG	2 cut(s)	822, 1062
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	63, 243, 346, 475, 1138
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	3 cut(s)	25, 85, 697
Lsp1109I	GCAGC	5 cut(s)	58, 88, 662, 854, 911
LweI	GCATC	2 cut(s)	50, 1155
MaeI	CTAG	2 cut(s)	221, 1170
MaeII	ACGT	4 cut(s)	463, 711, 729, 958
MaeIII	GTNAC	6 cut(s)	30, 511, 707, 794, 917, 959
MalI	GATC	5 cut(s)	65, 245, 348, 477, 1140
MboI	GATC	5 cut(s)	63, 243, 346, 475, 1138
MboII	GAAGA	8 cut(s)	200, 356, 429, 656, 926, 1007, 1126, 1174
MflI	RGATCY	1 cut(s)	475
MluCI	AATT	7 cut(s)	232, 357, 505, 598, 869, 1123, 1129
MmeI	TCCRAC	1 cut(s)	740
MseI	TTAA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	941
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	3 cut(s)	194, 371, 750
MwoI	GCNNNNNNNGC	4 cut(s)	80, 89, 98, 398
NdeII	GATC	5 cut(s)	63, 243, 346, 475, 1138
NlaIII	CATG	2 cut(s)	822, 1062
NlaIV	GGNNCC	3 cut(s)	27, 828, 975
NmuCI	GTSAC	1 cut(s)	917
PciSI	GCTCTTC	1 cut(s)	990
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	1 cut(s)	758
PfeI	GAWTC	6 cut(s)	50, 110, 255, 835, 854, 1146
PinAI	ACCGGT	1 cut(s)	697
PkrI	GCNGC	8 cut(s)	73, 103, 119, 134, 137, 652, 844, 926
Ppu21I	YACGTR	1 cut(s)	959
PpuMI	RGGWCCY	2 cut(s)	170, 974
PshAI	GACNNNNGTC	2 cut(s)	175, 312
PsiI	TTATAA	1 cut(s)	1134
Psp1406I	AACGTT	1 cut(s)	711
Psp5II	RGGWCCY	2 cut(s)	170, 974
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	27, 828, 975
PspPI	GGNCC	4 cut(s)	170, 224, 827, 974
PspPPI	RGGWCCY	2 cut(s)	170, 974
PsuI	RGATCY	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	941
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	8 cut(s)	72, 102, 118, 133, 136, 651, 843, 925
Sau3AI	GATC	5 cut(s)	63, 243, 346, 475, 1138
Sau96I	GGNCC	4 cut(s)	170, 224, 827, 974
ScrFI	CCNGG	1 cut(s)	261
SfaNI	GCATC	2 cut(s)	50, 1155
SfcI	CTRYAG	1 cut(s)	1032
SinI	GGWCC	4 cut(s)	170, 224, 827, 974
SmlI	CTYRAG	4 cut(s)	317, 585, 663, 672
SmoI	CTYRAG	4 cut(s)	317, 585, 663, 672
Sse9I	AATT	7 cut(s)	232, 357, 505, 598, 869, 1123, 1129
SspMI	CTAG	2 cut(s)	221, 1170
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	3 cut(s)	408, 579, 831
TaiI	ACGT	4 cut(s)	466, 714, 732, 961
TaqI	TCGA	3 cut(s)	283, 543, 1144
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	7 cut(s)	232, 357, 505, 598, 869, 1123, 1129
TauI	GCSGC	3 cut(s)	120, 135, 138
TfiI	GAWTC	6 cut(s)	50, 110, 255, 835, 854, 1146
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	2 cut(s)	73, 399
TseFI	GTSAC	1 cut(s)	917
TseI	GCWGC	5 cut(s)	71, 101, 650, 842, 924
Tsp45I	GTSAC	1 cut(s)	917
TspDTI	ATGAA	6 cut(s)	72, 561, 672, 846, 906, 1008
TspGWI	ACGGA	3 cut(s)	197, 393, 514
TspRI	CASTG	2 cut(s)	73, 399
VpaK11BI	GGWCC	4 cut(s)	170, 224, 827, 974
XapI	RAATTY	1 cut(s)	869
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	2 cut(s)	221, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.