RLG00000027160
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
9161139 .. 9163734
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027160

Sequence Viewer

Length: 1221 bp
ATGACAGTCCCAAACGACGCCGCTTCCAAACTCGACAACCACCGCGCCGAGCTGGACGCGTCATCGTCACTCGCCGATGACGGCGGTGAGGTCGCCGCTGGGAAAGTGAGGGGATCGTGGTCGCCCAAAGAGGATGAGATGCTGACTCGGCTGGTCACCCAGTTTGGCGCCAGAAACTGGAGCGTCATCGCCAGAGGAATTCCCGGCCGGTCCGGCAAGTCTTGCCGGCTCCGGTGGTGCAATCAGCTTAACCCTGGTGTAAAGCGCAAACCTTTCTCCGATGAAGAAGATCGTATTATAGTTGCAGCTCATGCCACTCATGGGAACAGATGGGCGATCATTGCAAAGCTCCTTCCGGGTAGAACAGATAATGCAATAAAGAATCACTGGAATTCTACTTTAAAGCGTGGGAGGAAGTACATCCCTCGAACTAGAAACATGAAGGAAGATAGCAGCCTAGAGAGATCAAAGACATCCTCTGAAGAAACCGTGTCAGCTGGGAATCTTAGTTCAGTCAGGACTCTTGAAGGAAGAGAAGTCTTGATAGTAGACAACAGCTTTAACCAGTTAGATGGAAGATGTCAAACAGAGGACAGTGTTGCTGTCACTGAATTGAAATATAATTCAACTCTTGTTGCTGAATTAAAAGAAGAGTCTACCCTCTGTCGTCCAGTGGCACGAGTCAGTGCTTTTAGTGCTTACAACCCTTCAAATGGCTCCATTGTTCCAAGGCCAGTCCCAATTAATGGCCCTTTGGTCCAAACATCTAATCTAGATTTTGACTTCTGCAACTCTCTTGAAGGTGACTGTAATGAGCCTATGGTTCCTCTGCGTTGTGGTCACGGTTGCTGTGATCGAAGCGGGGGGCATTTTCAAAGCTCATTGTTGGGGCCTGAGTTTATCGACTATGAGGAGCCTCCCTCCTTCTCCAGCCCAGAATTCATCTCTTGTGCTACAGATGTGAACAATATTGCATGGATTAAGAGTGGCCTTGAGAATCGTGAGACGATGAGAGTAGCAGAGAATGTAGCAAGCCAGAGATTCTCACAAGGGGCGGCTGCTACTCCGCAAATGGGGTATTATGAAATGAATATGATGAATGGACATATGCGCTTCGTGGAGGGACAGAACAGGCTAATGGGTATGATGACAGAAATGCTTTCAACCCCAATGCCTAGACAAACTTTTGCAATGCCAACTGAAGTTAAGGGATTGAGCTAG

Protein Analysis

407

Amino Acids

44.82

Weight (kDa)

6.43

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 83 5.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 40 - 97 7.7e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 89 - 133 2.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 142 2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011821)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 2 cut(s) 177, 746
AccI GTMKAC 2 cut(s) 549, 656
AccII CGCG 2 cut(s) 45, 59
AciI CCGC 7 cut(s) 21, 43, 84, 96, 861, 1055, 1067
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 3 cut(s) 198, 391, 938
AcuI CTGAAG 2 cut(s) 501, 1221
AcyI GRCGYC 2 cut(s) 18, 168
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 5 cut(s) 177, 321, 713, 746, 1073
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 7 cut(s) 527, 616, 627, 711, 800, 875, 1164
AjnI CCWGG 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 8 cut(s) 52, 247, 308, 349, 497, 558, 879, 1218
AluI AGCT 8 cut(s) 52, 247, 308, 349, 497, 558, 879, 1218
Alw26I GTCTC 1 cut(s) 998
AlwI GGATC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 177
AoxI GGCC 5 cut(s) 205, 731, 748, 890, 988
ApeKI GCWGC 3 cut(s) 305, 453, 1058
ApoI RAATTY 3 cut(s) 198, 391, 938
AseI ATTAAT 1 cut(s) 744
AspLEI GCGC 4 cut(s) 47, 170, 267, 1113
AspS9I GGNCC 4 cut(s) 210, 749, 757, 890
AsuC2I CCSGG 2 cut(s) 204, 357
AsuHPI GGTGA 3 cut(s) 98, 148, 815
AvaII GGWCC 2 cut(s) 210, 757
BanI GGYRCC 1 cut(s) 167
BauI CACGAG 1 cut(s) 678
BbvI GCAGC 3 cut(s) 317, 465, 1045
BccI CCATC 2 cut(s) 324, 566
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 255
BcnI CCSGG 2 cut(s) 204, 357
BcoDI GTCTC 1 cut(s) 998
BfaI CTAG 5 cut(s) 432, 458, 773, 1176, 1219
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 213
BisI GCNGC 6 cut(s) 21, 96, 306, 454, 1056, 1059
BlsI GCNGC 6 cut(s) 22, 97, 307, 455, 1057, 1060
Bme1390I CCNGG 3 cut(s) 204, 255, 357
Bme18I GGWCC 2 cut(s) 210, 757
BmgT120I GGNCC 4 cut(s) 210, 749, 757, 890
BmiI GGNNCC 6 cut(s) 169, 230, 718, 825, 891, 915
BmrFI CCNGG 3 cut(s) 204, 255, 357
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 905, 937
BpmI CTGGAG 2 cut(s) 199, 913
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 2 cut(s) 204, 357
BsaHI GRCGYC 2 cut(s) 18, 168
BsaJI CCNNGG 2 cut(s) 253, 728
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 5 cut(s) 177, 321, 713, 746, 1073
Bse118I RCCGGY 2 cut(s) 207, 225
Bse1I ACTGG 6 cut(s) 160, 182, 392, 565, 671, 734
Bse3DI GCAATG 2 cut(s) 339, 1197
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 253, 728
BseGI GGATG 3 cut(s) 139, 420, 473
BseLI CCNNNNNNNGG 5 cut(s) 177, 321, 713, 746, 1073
BseMI GCAATG 2 cut(s) 339, 1197
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 6 cut(s) 160, 182, 392, 565, 671, 734
BseRI GAGGAG 1 cut(s) 926
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 3 cut(s) 317, 465, 1045
BseYI CCCAGC 2 cut(s) 98, 497
Bsh1236I CGCG 2 cut(s) 45, 59
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 5 cut(s) 207, 733, 750, 892, 990
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 208
BsiSI CCGG 6 cut(s) 204, 208, 213, 226, 232, 356
BslFI GGGAC 2 cut(s) 722, 1137
BslI CCNNNNNNNGG 5 cut(s) 177, 321, 713, 746, 1073
BsmAI GTCTC 1 cut(s) 998
BsmBI CGTCTC 1 cut(s) 998
BsmFI GGGAC 2 cut(s) 722, 1137
BsnI GGCC 5 cut(s) 207, 733, 750, 892, 990
Bsp143I GATC 5 cut(s) 113, 289, 336, 464, 853
BspACI CCGC 7 cut(s) 21, 43, 84, 96, 861, 1055, 1067
BspANI GGCC 5 cut(s) 207, 733, 750, 892, 990
BspCNI CTCAG 1 cut(s) 886
BspFNI CGCG 2 cut(s) 45, 59
BspLI GGNNCC 6 cut(s) 169, 230, 718, 825, 891, 915
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 2 cut(s) 339, 1197
BsrFI RCCGGY 2 cut(s) 207, 225
BsrI ACTGG 6 cut(s) 160, 182, 392, 565, 671, 734
BssAI RCCGGY 2 cut(s) 207, 225
BssECI CCNNGG 2 cut(s) 253, 728
BssMI GATC 5 cut(s) 113, 289, 336, 464, 853
BssNI GRCGYC 2 cut(s) 18, 168
BssSI CACGAG 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 728
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 5 cut(s) 7, 490, 596, 809, 845
Bst6I CTCTTC 2 cut(s) 526, 645
BstACI GRCGYC 2 cut(s) 18, 168
BstAPI GCANNNNNTGC 2 cut(s) 222, 311
BstC8I GCNNGC 2 cut(s) 227, 1033
BstDEI CTNAG 2 cut(s) 506, 894
BstEII GGTNACC 1 cut(s) 154
BstF5I GGATG 3 cut(s) 139, 420, 473
BstFNI CGCG 2 cut(s) 45, 59
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 4 cut(s) 47, 170, 267, 1113
BstKTI GATC 5 cut(s) 116, 292, 339, 467, 856
BstMAI GTCTC 1 cut(s) 998
BstMBI GATC 5 cut(s) 113, 289, 336, 464, 853
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 6 cut(s) 148, 213, 222, 311, 341, 695
BstNI CCWGG 1 cut(s) 255
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 3 cut(s) 202, 253, 355
BstSFI CTRYAG 1 cut(s) 954
BstUI CGCG 2 cut(s) 45, 59
BstV1I GCAGC 3 cut(s) 317, 465, 1045
BstXI CCANNNNNNTGG 1 cut(s) 572
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 5 cut(s) 207, 733, 750, 892, 990
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 139, 420, 473
BtsIMutI CAGTG 5 cut(s) 385, 601, 606, 678, 691
Cac8I GCNNGC 2 cut(s) 227, 1033
CaiI CAGNNNCTG 1 cut(s) 177
CfoI GCGC 4 cut(s) 47, 170, 267, 1113
Cfr10I RCCGGY 2 cut(s) 207, 225
Cfr13I GGNCC 4 cut(s) 210, 749, 757, 890
CpoI CGGWCCG 1 cut(s) 210
CseI GACGC 4 cut(s) 26, 48, 65, 172
Csp6I GTAC 1 cut(s) 418
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 4 cut(s) 311, 320, 439, 975
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 506, 894
DinI GGCGCC 1 cut(s) 169
DpnI GATC 5 cut(s) 115, 291, 338, 466, 855
DpnII GATC 5 cut(s) 113, 289, 336, 464, 853
DraI TTTAAA 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 526, 645
EarI CTCTTC 2 cut(s) 526, 645
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 728
Eco47I GGWCC 2 cut(s) 210, 757
Eco52I CGGCCG 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 501, 1221
Eco91I GGTNACC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 890
EcoO65I GGTNACC 1 cut(s) 154
EcoRI GAATTC 3 cut(s) 198, 391, 938
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 728
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 728
Esp3I CGTCTC 1 cut(s) 998
FaeI CATG 4 cut(s) 314, 323, 442, 978
FaqI GGGAC 2 cut(s) 722, 1137
FatI CATG 4 cut(s) 310, 319, 438, 974
FauI CCCGC 1 cut(s) 854
FauNDI CATATG 1 cut(s) 1107
FblI GTMKAC 2 cut(s) 549, 656
Fnu4HI GCNGC 6 cut(s) 21, 96, 306, 454, 1056, 1059
FokI GGATG 3 cut(s) 146, 407, 460
Fsp4HI GCNGC 6 cut(s) 21, 96, 306, 454, 1056, 1059
FspBI CTAG 5 cut(s) 432, 458, 773, 1176, 1219
GlaI GCGC 4 cut(s) 46, 169, 266, 1112
GluI GCNGC 6 cut(s) 21, 96, 306, 454, 1056, 1059
GsaI CCCAGC 2 cut(s) 102, 501
GsuI CTGGAG 2 cut(s) 199, 913
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 5 cut(s) 207, 733, 750, 892, 990
HapII CCGG 6 cut(s) 204, 208, 213, 226, 232, 356
HgaI GACGC 4 cut(s) 26, 48, 65, 172
HhaI GCGC 4 cut(s) 47, 170, 267, 1113
Hin1I GRCGYC 2 cut(s) 18, 168
Hin1II CATG 4 cut(s) 314, 323, 442, 978
Hin6I GCGC 4 cut(s) 45, 168, 265, 1111
HinP1I GCGC 4 cut(s) 45, 168, 265, 1111
HinfI GANTC 8 cut(s) 145, 382, 502, 520, 653, 681, 997, 1041
HpaII CCGG 6 cut(s) 204, 208, 213, 226, 232, 356
HphI GGTGA 3 cut(s) 98, 148, 815
Hpy166II GTNNAC 3 cut(s) 550, 657, 964
Hpy188I TCNGA 2 cut(s) 280, 481
Hpy188III TCNNGA 6 cut(s) 517, 524, 541, 773, 797, 1001
Hpy8I GTNNAC 3 cut(s) 550, 657, 964
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 6 cut(s) 362, 436, 521, 717, 794, 934
HpyCH4III ACNGT 5 cut(s) 7, 490, 596, 809, 845
HpyCH4V TGCA 7 cut(s) 240, 305, 344, 374, 789, 974, 1190
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 213, 222, 311, 341, 695
HpyF3I CTNAG 2 cut(s) 506, 894
Hsp92I GRCGYC 2 cut(s) 18, 168
Hsp92II CATG 4 cut(s) 314, 323, 442, 978
HspAI GCGC 4 cut(s) 45, 168, 265, 1111
KasI GGCGCC 1 cut(s) 167
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Kzo9I GATC 5 cut(s) 113, 289, 336, 464, 853
LmnI GCTCC 5 cut(s) 180, 234, 354, 722, 913
Lsp1109I GCAGC 3 cut(s) 317, 465, 1045
LweI GCATC 1 cut(s) 129
MaeI CTAG 5 cut(s) 432, 458, 773, 1176, 1219
MaeIII GTNAC 5 cut(s) 66, 154, 604, 803, 839
MalI GATC 5 cut(s) 115, 291, 338, 466, 855
MboI GATC 5 cut(s) 113, 289, 336, 464, 853
MboII GAAGA 7 cut(s) 296, 299, 458, 494, 543, 588, 662
MluCI AATT 7 cut(s) 198, 391, 611, 622, 641, 741, 938
MluI ACGCGT 1 cut(s) 57
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 4 cut(s) 139, 514, 662, 690
MroNI GCCGGC 1 cut(s) 225
MseI TTAA 7 cut(s) 249, 401, 561, 644, 744, 981, 1206
MspA1I CMGCKG 2 cut(s) 98, 497
MspI CCGG 6 cut(s) 204, 208, 213, 226, 232, 356
MspR9I CCNGG 3 cut(s) 204, 255, 357
MvaI CCWGG 1 cut(s) 255
MvnI CGCG 2 cut(s) 45, 59
MwoI GCNNNNNNNGC 6 cut(s) 148, 213, 222, 311, 341, 695
NaeI GCCGGC 1 cut(s) 227
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 2 cut(s) 204, 357
NdeI CATATG 1 cut(s) 1107
NdeII GATC 5 cut(s) 113, 289, 336, 464, 853
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 4 cut(s) 314, 323, 442, 978
NlaIV GGNNCC 6 cut(s) 169, 230, 718, 825, 891, 915
NmeAIII GCCGAG 2 cut(s) 73, 127
NmuCI GTSAC 5 cut(s) 66, 154, 604, 803, 839
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 4 cut(s) 382, 502, 997, 1041
PflMI CCANNNNNTGG 2 cut(s) 177, 746
PkrI GCNGC 6 cut(s) 22, 97, 307, 455, 1057, 1060
PleI GAGTC 4 cut(s) 139, 514, 661, 689
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 4 cut(s) 139, 514, 661, 689
PshBI ATTAAT 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 253
PspEI GGTNACC 1 cut(s) 154
PspFI CCCAGC 2 cut(s) 98, 497
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 6 cut(s) 169, 230, 718, 825, 891, 915
PspPI GGNCC 4 cut(s) 210, 749, 757, 890
PstNI CAGNNNCTG 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SaqAI TTAA 7 cut(s) 249, 401, 561, 644, 744, 981, 1206
SatI GCNGC 6 cut(s) 21, 96, 306, 454, 1056, 1059
Sau3AI GATC 5 cut(s) 113, 289, 336, 464, 853
Sau96I GGNCC 4 cut(s) 210, 749, 757, 890
SchI GAGTC 4 cut(s) 139, 514, 662, 690
ScrFI CCNGG 3 cut(s) 204, 255, 357
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 954
SfoI GGCGCC 1 cut(s) 169
SinI GGWCC 2 cut(s) 210, 757
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
Sse9I AATT 7 cut(s) 198, 391, 611, 622, 641, 741, 938
SsiI CCGC 7 cut(s) 21, 43, 84, 96, 861, 1055, 1067
SspDI GGCGCC 1 cut(s) 167
SspI AATATT 1 cut(s) 970
SspMI CTAG 5 cut(s) 432, 458, 773, 1176, 1219
StyD4I CCNGG 3 cut(s) 202, 253, 355
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 5 cut(s) 7, 490, 596, 809, 845
TaqI TCGA 4 cut(s) 33, 427, 856, 903
TasI AATT 7 cut(s) 198, 391, 611, 622, 641, 741, 938
TatI WGTACW 1 cut(s) 417
TauI GCSGC 3 cut(s) 23, 98, 1058
TfiI GAWTC 4 cut(s) 382, 502, 997, 1041
Tru1I TTAA 7 cut(s) 249, 401, 561, 644, 744, 981, 1206
Tru9I TTAA 7 cut(s) 249, 401, 561, 644, 744, 981, 1206
TscAI CASTG 5 cut(s) 392, 601, 613, 678, 691
TseFI GTSAC 5 cut(s) 66, 154, 604, 803, 839
TseI GCWGC 3 cut(s) 305, 453, 1058
Tsp45I GTSAC 5 cut(s) 66, 154, 604, 803, 839
TspDTI ATGAA 6 cut(s) 297, 455, 931, 1098, 1103, 1112
TspRI CASTG 5 cut(s) 392, 601, 613, 678, 691
Van91I CCANNNNNTGG 2 cut(s) 177, 746
VpaK11BI GGWCC 2 cut(s) 210, 757
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 3 cut(s) 198, 391, 938
XbaI TCTAGA 1 cut(s) 772
XmiI GTMKAC 2 cut(s) 549, 656
XspI CTAG 5 cut(s) 432, 458, 773, 1176, 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.