SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39880 AT3G55730 |
| fragaria_vesca | FvH4_7g23750 |
| malus_domestica | MD01G1144700.v1.1 MD07G1211300.v1.1 |
| prunus_persica | Prupe.2G244100_v2.0.a1 |
| pyrus_communis | pycom01g16430 pycom07g19480 |
| rosa_chinensis | RchiOBHm_Chr1g0369061 |
| rosa_laevigata | RLG00000027160 |
| rosa_multiflora | Rmu_sc0004250.1_g000025 Rmu_sc0008155.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00288040 |
| rosa_rugosa | Rorug01G0347700 |
| rosa_samantha | Rh1AG354500 Rh1BG317800 Rh1CG332300 Rh1DG348700 |
| rosa_wichuraiana | Rw1G031300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 711 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 245 |
| AccB1I | GGYRCC | 1 cut(s) | 50 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 767 |
| AciI | CCGC | 3 cut(s) | 43, 87, 125 |
| AcoI | YGGCCR | 1 cut(s) | 859 |
| AcsI | RAATTY | 2 cut(s) | 186, 379 |
| AcvI | CACGTG | 1 cut(s) | 689 |
| AcyI | GRCGYC | 1 cut(s) | 18 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 142, 767 |
| AflIII | ACRYGT | 1 cut(s) | 688 |
| AgsI | TTSAA | 6 cut(s) | 67, 517, 750, 821, 985, 1067 |
| AjnI | CCWGG | 2 cut(s) | 343, 430 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 493, 525 |
| AluBI | AGCT | 4 cut(s) | 235, 337, 900, 1073 |
| AluI | AGCT | 4 cut(s) | 235, 337, 900, 1073 |
| Ama87I | CYCGRG | 2 cut(s) | 113, 180 |
| AoxI | GGCC | 6 cut(s) | 6, 57, 769, 859, 911, 1009 |
| ApeKI | GCWGC | 3 cut(s) | 602, 1070, 1073 |
| ApoI | RAATTY | 2 cut(s) | 186, 379 |
| AseI | ATTAAT | 1 cut(s) | 962 |
| AspLEI | GCGC | 3 cut(s) | 77, 396, 602 |
| AspS9I | GGNCC | 7 cut(s) | 7, 101, 428, 725, 770, 778, 911 |
| AsuC2I | CCSGG | 3 cut(s) | 48, 84, 192 |
| AvaI | CYCGRG | 2 cut(s) | 113, 180 |
| AvaII | GGWCC | 4 cut(s) | 101, 428, 725, 778 |
| BaeGI | GKGCMC | 1 cut(s) | 84 |
| BalI | TGGCCA | 1 cut(s) | 861 |
| BanI | GGYRCC | 1 cut(s) | 50 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 406, 438 |
| BauI | CACGAG | 1 cut(s) | 140 |
| BbrPI | CACGTG | 1 cut(s) | 689 |
| BbsI | GAAGAC | 1 cut(s) | 282 |
| BbvCI | CCTCAGC | 1 cut(s) | 218 |
| BbvI | GCAGC | 3 cut(s) | 589, 1060, 1082 |
| BccI | CCATC | 3 cut(s) | 436, 538, 657 |
| BceAI | ACGGC | 2 cut(s) | 5, 21 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 104, 138 |
| BciT130I | CCWGG | 2 cut(s) | 345, 432 |
| BcnI | CCSGG | 3 cut(s) | 48, 84, 192 |
| BfaI | CTAG | 2 cut(s) | 794, 1084 |
| BfoI | RGCGCY | 1 cut(s) | 603 |
| BisI | GCNGC | 3 cut(s) | 603, 1071, 1074 |
| BlpI | GCTNAGC | 1 cut(s) | 131 |
| BlsI | GCNGC | 3 cut(s) | 604, 1072, 1075 |
| Bme1390I | CCNGG | 5 cut(s) | 48, 84, 192, 345, 432 |
| Bme18I | GGWCC | 4 cut(s) | 101, 428, 725, 778 |
| BmeT110I | CYCGRG | 2 cut(s) | 113, 180 |
| BmgT120I | GGNCC | 7 cut(s) | 7, 101, 428, 725, 770, 778, 911 |
| BmiI | GGNNCC | 7 cut(s) | 9, 52, 102, 170, 780, 846, 912 |
| BmrFI | CCNGG | 5 cut(s) | 48, 84, 192, 345, 432 |
| BmsI | GCATC | 3 cut(s) | 112, 482, 1023 |
| BoxI | GACNNNNGTC | 1 cut(s) | 106 |
| BpiI | GAAGAC | 1 cut(s) | 282 |
| BpmI | CTGGAG | 2 cut(s) | 644, 934 |
| Bpu10I | CCTNAGC | 1 cut(s) | 218 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 131 |
| BpuEI | CTTGAG | 1 cut(s) | 1034 |
| BpuMI | CCSGG | 3 cut(s) | 48, 84, 192 |
| BsaAI | YACGTR | 1 cut(s) | 689 |
| BsaHI | GRCGYC | 1 cut(s) | 18 |
| BsaJI | CCNNGG | 9 cut(s) | 46, 54, 104, 114, 181, 267, 307, 431, 862 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 142, 767 |
| Bse118I | RCCGGY | 2 cut(s) | 135, 213 |
| Bse1I | ACTGG | 4 cut(s) | 430, 562, 661, 680 |
| Bse3DI | GCAATG | 2 cut(s) | 838, 969 |
| BseBI | CCWGG | 2 cut(s) | 345, 432 |
| BseDI | CCNNGG | 9 cut(s) | 46, 54, 104, 114, 181, 267, 307, 431, 862 |
| BseGI | GGATG | 4 cut(s) | 127, 473, 649, 1038 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 142, 767 |
| BseMI | GCAATG | 2 cut(s) | 838, 969 |
| BseMII | CTCAG | 4 cut(s) | 122, 209, 492, 906 |
| BseNI | ACTGG | 4 cut(s) | 430, 562, 661, 680 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseSI | GKGCMC | 1 cut(s) | 84 |
| BseXI | GCAGC | 3 cut(s) | 589, 1060, 1082 |
| Bsh1285I | CGRYCG | 1 cut(s) | 43 |
| BshFI | GGCC | 6 cut(s) | 8, 59, 771, 861, 913, 1011 |
| BshNI | GGYRCC | 1 cut(s) | 50 |
| BsiEI | CGRYCG | 1 cut(s) | 43 |
| BsiHKCI | CYCGRG | 2 cut(s) | 113, 180 |
| BsiSI | CCGG | 5 cut(s) | 48, 84, 136, 192, 214 |
| BslFI | GGGAC | 4 cut(s) | 8, 114, 743, 764 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 142, 767 |
| BsmFI | GGGAC | 4 cut(s) | 8, 114, 743, 764 |
| BsmI | GAATGC | 1 cut(s) | 889 |
| BsnI | GGCC | 6 cut(s) | 8, 59, 771, 861, 913, 1011 |
| BsoBI | CYCGRG | 2 cut(s) | 113, 180 |
| Bsp1286I | GDGCHC | 1 cut(s) | 84 |
| Bsp143I | GATC | 2 cut(s) | 174, 874 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 131 |
| Bsp19I | CCATGG | 1 cut(s) | 307 |
| BspACI | CCGC | 3 cut(s) | 43, 87, 125 |
| BspANI | GGCC | 6 cut(s) | 8, 59, 771, 861, 913, 1011 |
| BspCNI | CTCAG | 4 cut(s) | 123, 210, 491, 907 |
| BspHI | TCATGA | 1 cut(s) | 523 |
| BspLI | GGNNCC | 7 cut(s) | 9, 52, 102, 170, 780, 846, 912 |
| BspT107I | GGYRCC | 1 cut(s) | 50 |
| BsrDI | GCAATG | 2 cut(s) | 838, 969 |
| BsrFI | RCCGGY | 2 cut(s) | 135, 213 |
| BsrI | ACTGG | 4 cut(s) | 430, 562, 661, 680 |
| BssAI | RCCGGY | 2 cut(s) | 135, 213 |
| BssECI | CCNNGG | 9 cut(s) | 46, 54, 104, 114, 181, 267, 307, 431, 862 |
| BssMI | GATC | 2 cut(s) | 174, 874 |
| BssNI | GRCGYC | 1 cut(s) | 18 |
| BssSI | CACGAG | 1 cut(s) | 140 |
| BssT1I | CCWWGG | 1 cut(s) | 307 |
| Bst2BI | CACGAG | 1 cut(s) | 140 |
| Bst2UI | CCWGG | 2 cut(s) | 345, 432 |
| Bst4CI | ACNGT | 6 cut(s) | 105, 198, 281, 716, 757, 866 |
| Bst6I | CTCTTC | 1 cut(s) | 526 |
| BstACI | GRCGYC | 1 cut(s) | 18 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 329 |
| BstBAI | YACGTR | 1 cut(s) | 689 |
| BstC8I | GCNNGC | 4 cut(s) | 137, 215, 829, 1051 |
| BstDEI | CTNAG | 5 cut(s) | 131, 218, 389, 478, 915 |
| BstDSI | CCRYGG | 3 cut(s) | 104, 307, 862 |
| BstF5I | GGATG | 4 cut(s) | 127, 473, 649, 1038 |
| BstH2I | RGCGCY | 1 cut(s) | 603 |
| BstHHI | GCGC | 3 cut(s) | 77, 396, 602 |
| BstKTI | GATC | 2 cut(s) | 177, 877 |
| BstMBI | GATC | 2 cut(s) | 174, 874 |
| BstMCI | CGRYCG | 1 cut(s) | 43 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 136, 329, 867 |
| BstNI | CCWGG | 2 cut(s) | 345, 432 |
| BstNSI | RCATGY | 2 cut(s) | 302, 831 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 106 |
| BstSCI | CCNGG | 5 cut(s) | 46, 82, 190, 343, 430 |
| BstSLI | GKGCMC | 1 cut(s) | 84 |
| BstV1I | GCAGC | 3 cut(s) | 589, 1060, 1082 |
| BstV2I | GAAGAC | 1 cut(s) | 282 |
| BsuRI | GGCC | 6 cut(s) | 8, 59, 771, 861, 913, 1011 |
| BtgI | CCRYGG | 3 cut(s) | 104, 307, 862 |
| BtsCI | GGATG | 4 cut(s) | 127, 473, 649, 1038 |
| BtsI | GCAGTG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 687 |
| Cac8I | GCNNGC | 4 cut(s) | 137, 215, 829, 1051 |
| CciI | TCATGA | 1 cut(s) | 523 |
| CfoI | GCGC | 3 cut(s) | 77, 396, 602 |
| Cfr10I | RCCGGY | 2 cut(s) | 135, 213 |
| Cfr13I | GGNCC | 7 cut(s) | 7, 101, 428, 725, 770, 778, 911 |
| CseI | GACGC | 2 cut(s) | 26, 235 |
| CviAII | CATG | 7 cut(s) | 299, 308, 524, 581, 767, 828, 996 |
| DdeI | CTNAG | 5 cut(s) | 131, 218, 389, 478, 915 |
| DpnI | GATC | 2 cut(s) | 176, 876 |
| DpnII | GATC | 2 cut(s) | 174, 874 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 245 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 245 |
| EaeI | YGGCCR | 1 cut(s) | 859 |
| Eam1104I | CTCTTC | 1 cut(s) | 526 |
| EarI | CTCTTC | 1 cut(s) | 526 |
| Eco130I | CCWWGG | 1 cut(s) | 307 |
| Eco47I | GGWCC | 4 cut(s) | 101, 428, 725, 778 |
| Eco72I | CACGTG | 1 cut(s) | 689 |
| Eco88I | CYCGRG | 2 cut(s) | 113, 180 |
| EcoO109I | RGGNCCY | 1 cut(s) | 911 |
| EcoRI | GAATTC | 2 cut(s) | 186, 379 |
| EcoRII | CCWGG | 2 cut(s) | 343, 430 |
| EcoT14I | CCWWGG | 1 cut(s) | 307 |
| EcoT22I | ATGCAT | 1 cut(s) | 475 |
| ErhI | CCWWGG | 1 cut(s) | 307 |
| FaeI | CATG | 7 cut(s) | 302, 311, 527, 584, 770, 831, 999 |
| FaqI | GGGAC | 4 cut(s) | 8, 114, 743, 764 |
| FatI | CATG | 7 cut(s) | 298, 307, 523, 580, 766, 827, 995 |
| FauI | CCCGC | 1 cut(s) | 80 |
| Fnu4HI | GCNGC | 3 cut(s) | 603, 1071, 1074 |
| FokI | GGATG | 4 cut(s) | 134, 460, 636, 1045 |
| Fsp4HI | GCNGC | 3 cut(s) | 603, 1071, 1074 |
| FspBI | CTAG | 2 cut(s) | 794, 1084 |
| GlaI | GCGC | 3 cut(s) | 76, 395, 601 |
| GluI | GCNGC | 3 cut(s) | 603, 1071, 1074 |
| GsuI | CTGGAG | 2 cut(s) | 644, 934 |
| HaeII | RGCGCY | 1 cut(s) | 603 |
| HaeIII | GGCC | 6 cut(s) | 8, 59, 771, 861, 913, 1011 |
| HapII | CCGG | 5 cut(s) | 48, 84, 136, 192, 214 |
| HgaI | GACGC | 2 cut(s) | 26, 235 |
| HhaI | GCGC | 3 cut(s) | 77, 396, 602 |
| Hin1I | GRCGYC | 1 cut(s) | 18 |
| Hin1II | CATG | 7 cut(s) | 302, 311, 527, 584, 770, 831, 999 |
| Hin6I | GCGC | 3 cut(s) | 75, 394, 600 |
| HinP1I | GCGC | 3 cut(s) | 75, 394, 600 |
| HindIII | AAGCTT | 1 cut(s) | 335 |
| HinfI | GANTC | 5 cut(s) | 363, 520, 608, 879, 1059 |
| HpaII | CCGG | 5 cut(s) | 48, 84, 136, 192, 214 |
| Hpy166II | GTNNAC | 2 cut(s) | 257, 666 |
| Hpy188I | TCNGA | 2 cut(s) | 268, 481 |
| Hpy188III | TCNNGA | 4 cut(s) | 367, 517, 524, 541 |
| Hpy8I | GTNNAC | 2 cut(s) | 257, 666 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 572 |
| HpyAV | CCTTC | 3 cut(s) | 408, 521, 815 |
| HpyCH4III | ACNGT | 6 cut(s) | 105, 198, 281, 716, 757, 866 |
| HpyCH4IV | ACGT | 4 cut(s) | 69, 570, 688, 1044 |
| HpyCH4V | TGCA | 6 cut(s) | 332, 473, 584, 827, 831, 995 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 136, 329, 867 |
| HpyF3I | CTNAG | 5 cut(s) | 131, 218, 389, 478, 915 |
| HpySE526I | ACGT | 4 cut(s) | 69, 570, 688, 1044 |
| Hsp92I | GRCGYC | 1 cut(s) | 18 |
| Hsp92II | CATG | 7 cut(s) | 302, 311, 527, 584, 770, 831, 999 |
| HspAI | GCGC | 3 cut(s) | 75, 394, 600 |
| KroI | GCCGGC | 2 cut(s) | 135, 213 |
| KroNI | GCCGGC | 2 cut(s) | 137, 215 |
| Kzo9I | GATC | 2 cut(s) | 174, 874 |
| LmnI | GCTCC | 1 cut(s) | 168 |
| Lsp1109I | GCAGC | 3 cut(s) | 589, 1060, 1082 |
| LweI | GCATC | 3 cut(s) | 112, 482, 1023 |
| MaeI | CTAG | 2 cut(s) | 794, 1084 |
| MaeII | ACGT | 4 cut(s) | 69, 570, 688, 1044 |
| MaeIII | GTNAC | 2 cut(s) | 289, 644 |
| MalI | GATC | 2 cut(s) | 176, 876 |
| MboI | GATC | 2 cut(s) | 174, 874 |
| MboII | GAAGA | 6 cut(s) | 284, 287, 332, 458, 494, 543 |
| MhlI | GDGCHC | 1 cut(s) | 84 |
| MlsI | TGGCCA | 1 cut(s) | 861 |
| MluCI | AATT | 6 cut(s) | 163, 186, 327, 379, 619, 959 |
| MluNI | TGGCCA | 1 cut(s) | 861 |
| MlyI | GAGTC | 4 cut(s) | 514, 602, 888, 1068 |
| MmeI | TCCRAC | 1 cut(s) | 677 |
| Mox20I | TGGCCA | 1 cut(s) | 861 |
| Mph1103I | ATGCAT | 1 cut(s) | 475 |
| MroNI | GCCGGC | 2 cut(s) | 135, 213 |
| MscI | TGGCCA | 1 cut(s) | 861 |
| MseI | TTAA | 3 cut(s) | 420, 962, 1002 |
| Msp20I | TGGCCA | 1 cut(s) | 861 |
| MspA1I | CMGCKG | 1 cut(s) | 1073 |
| MspI | CCGG | 5 cut(s) | 48, 84, 136, 192, 214 |
| MspR9I | CCNGG | 5 cut(s) | 48, 84, 192, 345, 432 |
| Mva1269I | GAATGC | 1 cut(s) | 889 |
| MvaI | CCWGG | 2 cut(s) | 345, 432 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 136, 329, 867 |
| NaeI | GCCGGC | 2 cut(s) | 137, 215 |
| NciI | CCSGG | 3 cut(s) | 48, 84, 192 |
| NcoI | CCATGG | 1 cut(s) | 307 |
| NdeII | GATC | 2 cut(s) | 174, 874 |
| NgoMIV | GCCGGC | 2 cut(s) | 135, 213 |
| NlaIII | CATG | 7 cut(s) | 302, 311, 527, 584, 770, 831, 999 |
| NlaIV | GGNNCC | 7 cut(s) | 9, 52, 102, 170, 780, 846, 912 |
| NmeAIII | GCCGAG | 2 cut(s) | 85, 661 |
| NmuCI | GTSAC | 1 cut(s) | 644 |
| NsiI | ATGCAT | 1 cut(s) | 475 |
| NspI | RCATGY | 2 cut(s) | 302, 831 |
| PaeI | GCATGC | 1 cut(s) | 831 |
| PagI | TCATGA | 1 cut(s) | 523 |
| PctI | GAATGC | 1 cut(s) | 889 |
| PdiI | GCCGGC | 2 cut(s) | 137, 215 |
| PfeI | GAWTC | 1 cut(s) | 363 |
| PflFI | GACNNNGTC | 1 cut(s) | 20 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 767 |
| PfoI | TCCNGGA | 1 cut(s) | 190 |
| PkrI | GCNGC | 3 cut(s) | 604, 1072, 1075 |
| PleI | GAGTC | 4 cut(s) | 514, 602, 887, 1067 |
| PmaCI | CACGTG | 1 cut(s) | 689 |
| PmlI | CACGTG | 1 cut(s) | 689 |
| PpsI | GAGTC | 4 cut(s) | 514, 602, 887, 1067 |
| Ppu21I | YACGTR | 1 cut(s) | 689 |
| PshAI | GACNNNNGTC | 1 cut(s) | 106 |
| PshBI | ATTAAT | 1 cut(s) | 962 |
| PsiI | TTATAA | 1 cut(s) | 711 |
| Psp6I | CCWGG | 2 cut(s) | 343, 430 |
| PspCI | CACGTG | 1 cut(s) | 689 |
| PspGI | CCWGG | 2 cut(s) | 343, 430 |
| PspN4I | GGNNCC | 7 cut(s) | 9, 52, 102, 170, 780, 846, 912 |
| PspPI | GGNCC | 7 cut(s) | 7, 101, 428, 725, 770, 778, 911 |
| PsyI | GACNNNGTC | 1 cut(s) | 20 |
| PvuII | CAGCTG | 1 cut(s) | 1073 |
| SaqAI | TTAA | 3 cut(s) | 420, 962, 1002 |
| SatI | GCNGC | 3 cut(s) | 603, 1071, 1074 |
| Sau3AI | GATC | 2 cut(s) | 174, 874 |
| Sau96I | GGNCC | 7 cut(s) | 7, 101, 428, 725, 770, 778, 911 |
| SchI | GAGTC | 4 cut(s) | 514, 602, 888, 1068 |
| ScrFI | CCNGG | 5 cut(s) | 48, 84, 192, 345, 432 |
| SduI | GDGCHC | 1 cut(s) | 84 |
| SfaNI | GCATC | 3 cut(s) | 112, 482, 1023 |
| SinI | GGWCC | 4 cut(s) | 101, 428, 725, 778 |
| SmlI | CTYRAG | 1 cut(s) | 1013 |
| SmoI | CTYRAG | 1 cut(s) | 1013 |
| SphI | GCATGC | 1 cut(s) | 831 |
| Sse9I | AATT | 6 cut(s) | 163, 186, 327, 379, 619, 959 |
| SsiI | CCGC | 3 cut(s) | 43, 87, 125 |
| SspMI | CTAG | 2 cut(s) | 794, 1084 |
| StyD4I | CCNGG | 5 cut(s) | 46, 82, 190, 343, 430 |
| StyI | CCWWGG | 1 cut(s) | 307 |
| TaaI | ACNGT | 6 cut(s) | 105, 198, 281, 716, 757, 866 |
| TaiI | ACGT | 4 cut(s) | 72, 573, 691, 1047 |
| TaqI | TCGA | 3 cut(s) | 567, 877, 882 |
| TasI | AATT | 6 cut(s) | 163, 186, 327, 379, 619, 959 |
| TfiI | GAWTC | 1 cut(s) | 363 |
| Tru1I | TTAA | 3 cut(s) | 420, 962, 1002 |
| Tru9I | TTAA | 3 cut(s) | 420, 962, 1002 |
| TscAI | CASTG | 2 cut(s) | 84, 687 |
| TseFI | GTSAC | 1 cut(s) | 644 |
| TseI | GCWGC | 3 cut(s) | 602, 1070, 1073 |
| Tsp45I | GTSAC | 1 cut(s) | 644 |
| TspDTI | ATGAA | 3 cut(s) | 501, 540, 729 |
| TspGWI | ACGGA | 2 cut(s) | 375, 992 |
| TspRI | CASTG | 2 cut(s) | 84, 687 |
| Tth111I | GACNNNGTC | 1 cut(s) | 20 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 767 |
| VpaK11BI | GGWCC | 4 cut(s) | 101, 428, 725, 778 |
| VspI | ATTAAT | 1 cut(s) | 962 |
| XapI | RAATTY | 2 cut(s) | 186, 379 |
| XceI | RCATGY | 2 cut(s) | 302, 831 |
| XspI | CTAG | 2 cut(s) | 794, 1084 |
| Zsp2I | ATGCAT | 1 cut(s) | 475 |