pycom01g16430
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
16007505 .. 16009766
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16430.2

Sequence Viewer

Length: 1086 bp
ATGACGGCCCCAAACGACGCCGTCCCCAAAGAAGCCAACGACCGCCCCGGCACCGAGGCCGAGTTGAACGTGGGCGCAGTGCCCGGCGGGAAAGTGAGGGGACCGTGGTCGCCCGAGGAGGATGCGGTGCTGAGCCGGCTCGTGGGCAACTTCGGGGCGAGGAATTGGAGCCTGATCGCCCGAGGAATTCCCGGACGGTCTGGGAAGTCGTGCCGGCTGAGGTGGTGTAATCAGCTTGACCCCTGCGTCAAGCGTAAACCCTTTTCCGAGGAAGAAGACCGTATTATAGTTACAGCACATGCTATCCATGGGAACAAATGGGCAGTAATTGCAAAGCTTCTTCCAGGTAGAACAGATAACGGAATCAAGAACCATTGGAATTCTACACTAAGGCGCAAGTGCTTTGATAAAGGAAGGTTTAATACTGGACCTGGGGAAATGATGGAAGATGACACCTTTGACAGAAAAAATGCATCCTCAGAAGAAACCTTGTCAGTTGGGAATATCAGTTCATTCAAGACTCATGAAGGAAGAGAGGTCTTGATGGAAAATAGACCAAACCAGTTCGACGTAAGAAGTCATGCAAAGGAGGGTTCTGGCGCTGCTGACTCAAAGCACAATTCTACTCTTATTGCCGAGCCAAGTGACCATCCAACTCTCCAGTCCACCATTAGTCGTCCAGTGGCACGTGTTAGTGCTTTTAGTGTTTATAACCGTCCAAGTGGTCCAGCAAATGCTTCATCGTTTTCAAGGACAGTCCCAAGTCATGGCCCTTTGGTCCCAATAACTAAACTAGATTTCGGCTTTGACAACTTCCTTGAAGGTGCATGCAATGAGCCTATGGTTCCTCAACGCTGTGGCCACGGTTGCTGTGATCGAGTCGAGGGGCATTCTCAAAGCTCATTGTTGGGGCCTGAGTTCGTTGAGTATGATGAGCCTCTCCCTTTCTCCAGCCACGAATTAATCTCCATTGCTACGGATTTGAACAAGATTGCATGGATTAAGAGTGGCCTTGAGAGTAATGGGATTAGGATGCCAGAGAACGTAGCAAGCCAGAGAGTCTTTCAAGCAGCTGCCACTACCTAG

Protein Analysis

362

Amino Acids

39.45

Weight (kDa)

6.84

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011821)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AasI GACNNNNNNGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 50
AccB7I CCANNNNNTGG 1 cut(s) 767
AciI CCGC 3 cut(s) 43, 87, 125
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 2 cut(s) 186, 379
AcvI CACGTG 1 cut(s) 689
AcyI GRCGYC 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 142, 767
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 6 cut(s) 67, 517, 750, 821, 985, 1067
AjnI CCWGG 2 cut(s) 343, 430
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 4 cut(s) 235, 337, 900, 1073
AluI AGCT 4 cut(s) 235, 337, 900, 1073
Ama87I CYCGRG 2 cut(s) 113, 180
AoxI GGCC 6 cut(s) 6, 57, 769, 859, 911, 1009
ApeKI GCWGC 3 cut(s) 602, 1070, 1073
ApoI RAATTY 2 cut(s) 186, 379
AseI ATTAAT 1 cut(s) 962
AspLEI GCGC 3 cut(s) 77, 396, 602
AspS9I GGNCC 7 cut(s) 7, 101, 428, 725, 770, 778, 911
AsuC2I CCSGG 3 cut(s) 48, 84, 192
AvaI CYCGRG 2 cut(s) 113, 180
AvaII GGWCC 4 cut(s) 101, 428, 725, 778
BaeGI GKGCMC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 861
BanI GGYRCC 1 cut(s) 50
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
BauI CACGAG 1 cut(s) 140
BbrPI CACGTG 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 282
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 3 cut(s) 589, 1060, 1082
BccI CCATC 3 cut(s) 436, 538, 657
BceAI ACGGC 2 cut(s) 5, 21
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 2 cut(s) 345, 432
BcnI CCSGG 3 cut(s) 48, 84, 192
BfaI CTAG 2 cut(s) 794, 1084
BfoI RGCGCY 1 cut(s) 603
BisI GCNGC 3 cut(s) 603, 1071, 1074
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 3 cut(s) 604, 1072, 1075
Bme1390I CCNGG 5 cut(s) 48, 84, 192, 345, 432
Bme18I GGWCC 4 cut(s) 101, 428, 725, 778
BmeT110I CYCGRG 2 cut(s) 113, 180
BmgT120I GGNCC 7 cut(s) 7, 101, 428, 725, 770, 778, 911
BmiI GGNNCC 7 cut(s) 9, 52, 102, 170, 780, 846, 912
BmrFI CCNGG 5 cut(s) 48, 84, 192, 345, 432
BmsI GCATC 3 cut(s) 112, 482, 1023
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 644, 934
Bpu10I CCTNAGC 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 3 cut(s) 48, 84, 192
BsaAI YACGTR 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 9 cut(s) 46, 54, 104, 114, 181, 267, 307, 431, 862
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 767
Bse118I RCCGGY 2 cut(s) 135, 213
Bse1I ACTGG 4 cut(s) 430, 562, 661, 680
Bse3DI GCAATG 2 cut(s) 838, 969
BseBI CCWGG 2 cut(s) 345, 432
BseDI CCNNGG 9 cut(s) 46, 54, 104, 114, 181, 267, 307, 431, 862
BseGI GGATG 4 cut(s) 127, 473, 649, 1038
BseLI CCNNNNNNNGG 2 cut(s) 142, 767
BseMI GCAATG 2 cut(s) 838, 969
BseMII CTCAG 4 cut(s) 122, 209, 492, 906
BseNI ACTGG 4 cut(s) 430, 562, 661, 680
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 3 cut(s) 589, 1060, 1082
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 6 cut(s) 8, 59, 771, 861, 913, 1011
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 43
BsiHKCI CYCGRG 2 cut(s) 113, 180
BsiSI CCGG 5 cut(s) 48, 84, 136, 192, 214
BslFI GGGAC 4 cut(s) 8, 114, 743, 764
BslI CCNNNNNNNGG 2 cut(s) 142, 767
BsmFI GGGAC 4 cut(s) 8, 114, 743, 764
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 6 cut(s) 8, 59, 771, 861, 913, 1011
BsoBI CYCGRG 2 cut(s) 113, 180
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 174, 874
Bsp1720I GCTNAGC 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 3 cut(s) 43, 87, 125
BspANI GGCC 6 cut(s) 8, 59, 771, 861, 913, 1011
BspCNI CTCAG 4 cut(s) 123, 210, 491, 907
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 7 cut(s) 9, 52, 102, 170, 780, 846, 912
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 2 cut(s) 838, 969
BsrFI RCCGGY 2 cut(s) 135, 213
BsrI ACTGG 4 cut(s) 430, 562, 661, 680
BssAI RCCGGY 2 cut(s) 135, 213
BssECI CCNNGG 9 cut(s) 46, 54, 104, 114, 181, 267, 307, 431, 862
BssMI GATC 2 cut(s) 174, 874
BssNI GRCGYC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 307
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 345, 432
Bst4CI ACNGT 6 cut(s) 105, 198, 281, 716, 757, 866
Bst6I CTCTTC 1 cut(s) 526
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 4 cut(s) 137, 215, 829, 1051
BstDEI CTNAG 5 cut(s) 131, 218, 389, 478, 915
BstDSI CCRYGG 3 cut(s) 104, 307, 862
BstF5I GGATG 4 cut(s) 127, 473, 649, 1038
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 3 cut(s) 77, 396, 602
BstKTI GATC 2 cut(s) 177, 877
BstMBI GATC 2 cut(s) 174, 874
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 136, 329, 867
BstNI CCWGG 2 cut(s) 345, 432
BstNSI RCATGY 2 cut(s) 302, 831
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 5 cut(s) 46, 82, 190, 343, 430
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 589, 1060, 1082
BstV2I GAAGAC 1 cut(s) 282
BsuRI GGCC 6 cut(s) 8, 59, 771, 861, 913, 1011
BtgI CCRYGG 3 cut(s) 104, 307, 862
BtsCI GGATG 4 cut(s) 127, 473, 649, 1038
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 687
Cac8I GCNNGC 4 cut(s) 137, 215, 829, 1051
CciI TCATGA 1 cut(s) 523
CfoI GCGC 3 cut(s) 77, 396, 602
Cfr10I RCCGGY 2 cut(s) 135, 213
Cfr13I GGNCC 7 cut(s) 7, 101, 428, 725, 770, 778, 911
CseI GACGC 2 cut(s) 26, 235
CviAII CATG 7 cut(s) 299, 308, 524, 581, 767, 828, 996
DdeI CTNAG 5 cut(s) 131, 218, 389, 478, 915
DpnI GATC 2 cut(s) 176, 876
DpnII GATC 2 cut(s) 174, 874
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 307
Eco47I GGWCC 4 cut(s) 101, 428, 725, 778
Eco72I CACGTG 1 cut(s) 689
Eco88I CYCGRG 2 cut(s) 113, 180
EcoO109I RGGNCCY 1 cut(s) 911
EcoRI GAATTC 2 cut(s) 186, 379
EcoRII CCWGG 2 cut(s) 343, 430
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 7 cut(s) 302, 311, 527, 584, 770, 831, 999
FaqI GGGAC 4 cut(s) 8, 114, 743, 764
FatI CATG 7 cut(s) 298, 307, 523, 580, 766, 827, 995
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 603, 1071, 1074
FokI GGATG 4 cut(s) 134, 460, 636, 1045
Fsp4HI GCNGC 3 cut(s) 603, 1071, 1074
FspBI CTAG 2 cut(s) 794, 1084
GlaI GCGC 3 cut(s) 76, 395, 601
GluI GCNGC 3 cut(s) 603, 1071, 1074
GsuI CTGGAG 2 cut(s) 644, 934
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 6 cut(s) 8, 59, 771, 861, 913, 1011
HapII CCGG 5 cut(s) 48, 84, 136, 192, 214
HgaI GACGC 2 cut(s) 26, 235
HhaI GCGC 3 cut(s) 77, 396, 602
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 7 cut(s) 302, 311, 527, 584, 770, 831, 999
Hin6I GCGC 3 cut(s) 75, 394, 600
HinP1I GCGC 3 cut(s) 75, 394, 600
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 5 cut(s) 363, 520, 608, 879, 1059
HpaII CCGG 5 cut(s) 48, 84, 136, 192, 214
Hpy166II GTNNAC 2 cut(s) 257, 666
Hpy188I TCNGA 2 cut(s) 268, 481
Hpy188III TCNNGA 4 cut(s) 367, 517, 524, 541
Hpy8I GTNNAC 2 cut(s) 257, 666
Hpy99I CGWCG 2 cut(s) 20, 572
HpyAV CCTTC 3 cut(s) 408, 521, 815
HpyCH4III ACNGT 6 cut(s) 105, 198, 281, 716, 757, 866
HpyCH4IV ACGT 4 cut(s) 69, 570, 688, 1044
HpyCH4V TGCA 6 cut(s) 332, 473, 584, 827, 831, 995
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 329, 867
HpyF3I CTNAG 5 cut(s) 131, 218, 389, 478, 915
HpySE526I ACGT 4 cut(s) 69, 570, 688, 1044
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 7 cut(s) 302, 311, 527, 584, 770, 831, 999
HspAI GCGC 3 cut(s) 75, 394, 600
KroI GCCGGC 2 cut(s) 135, 213
KroNI GCCGGC 2 cut(s) 137, 215
Kzo9I GATC 2 cut(s) 174, 874
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 3 cut(s) 589, 1060, 1082
LweI GCATC 3 cut(s) 112, 482, 1023
MaeI CTAG 2 cut(s) 794, 1084
MaeII ACGT 4 cut(s) 69, 570, 688, 1044
MaeIII GTNAC 2 cut(s) 289, 644
MalI GATC 2 cut(s) 176, 876
MboI GATC 2 cut(s) 174, 874
MboII GAAGA 6 cut(s) 284, 287, 332, 458, 494, 543
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 6 cut(s) 163, 186, 327, 379, 619, 959
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 4 cut(s) 514, 602, 888, 1068
MmeI TCCRAC 1 cut(s) 677
Mox20I TGGCCA 1 cut(s) 861
Mph1103I ATGCAT 1 cut(s) 475
MroNI GCCGGC 2 cut(s) 135, 213
MscI TGGCCA 1 cut(s) 861
MseI TTAA 3 cut(s) 420, 962, 1002
Msp20I TGGCCA 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 1073
MspI CCGG 5 cut(s) 48, 84, 136, 192, 214
MspR9I CCNGG 5 cut(s) 48, 84, 192, 345, 432
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 2 cut(s) 345, 432
MwoI GCNNNNNNNGC 3 cut(s) 136, 329, 867
NaeI GCCGGC 2 cut(s) 137, 215
NciI CCSGG 3 cut(s) 48, 84, 192
NcoI CCATGG 1 cut(s) 307
NdeII GATC 2 cut(s) 174, 874
NgoMIV GCCGGC 2 cut(s) 135, 213
NlaIII CATG 7 cut(s) 302, 311, 527, 584, 770, 831, 999
NlaIV GGNNCC 7 cut(s) 9, 52, 102, 170, 780, 846, 912
NmeAIII GCCGAG 2 cut(s) 85, 661
NmuCI GTSAC 1 cut(s) 644
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 2 cut(s) 302, 831
PaeI GCATGC 1 cut(s) 831
PagI TCATGA 1 cut(s) 523
PctI GAATGC 1 cut(s) 889
PdiI GCCGGC 2 cut(s) 137, 215
PfeI GAWTC 1 cut(s) 363
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 767
PfoI TCCNGGA 1 cut(s) 190
PkrI GCNGC 3 cut(s) 604, 1072, 1075
PleI GAGTC 4 cut(s) 514, 602, 887, 1067
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
PpsI GAGTC 4 cut(s) 514, 602, 887, 1067
Ppu21I YACGTR 1 cut(s) 689
PshAI GACNNNNGTC 1 cut(s) 106
PshBI ATTAAT 1 cut(s) 962
PsiI TTATAA 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 343, 430
PspCI CACGTG 1 cut(s) 689
PspGI CCWGG 2 cut(s) 343, 430
PspN4I GGNNCC 7 cut(s) 9, 52, 102, 170, 780, 846, 912
PspPI GGNCC 7 cut(s) 7, 101, 428, 725, 770, 778, 911
PsyI GACNNNGTC 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 1073
SaqAI TTAA 3 cut(s) 420, 962, 1002
SatI GCNGC 3 cut(s) 603, 1071, 1074
Sau3AI GATC 2 cut(s) 174, 874
Sau96I GGNCC 7 cut(s) 7, 101, 428, 725, 770, 778, 911
SchI GAGTC 4 cut(s) 514, 602, 888, 1068
ScrFI CCNGG 5 cut(s) 48, 84, 192, 345, 432
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 3 cut(s) 112, 482, 1023
SinI GGWCC 4 cut(s) 101, 428, 725, 778
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
SphI GCATGC 1 cut(s) 831
Sse9I AATT 6 cut(s) 163, 186, 327, 379, 619, 959
SsiI CCGC 3 cut(s) 43, 87, 125
SspMI CTAG 2 cut(s) 794, 1084
StyD4I CCNGG 5 cut(s) 46, 82, 190, 343, 430
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 6 cut(s) 105, 198, 281, 716, 757, 866
TaiI ACGT 4 cut(s) 72, 573, 691, 1047
TaqI TCGA 3 cut(s) 567, 877, 882
TasI AATT 6 cut(s) 163, 186, 327, 379, 619, 959
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 3 cut(s) 420, 962, 1002
Tru9I TTAA 3 cut(s) 420, 962, 1002
TscAI CASTG 2 cut(s) 84, 687
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 3 cut(s) 602, 1070, 1073
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 3 cut(s) 501, 540, 729
TspGWI ACGGA 2 cut(s) 375, 992
TspRI CASTG 2 cut(s) 84, 687
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 767
VpaK11BI GGWCC 4 cut(s) 101, 428, 725, 778
VspI ATTAAT 1 cut(s) 962
XapI RAATTY 2 cut(s) 186, 379
XceI RCATGY 2 cut(s) 302, 831
XspI CTAG 2 cut(s) 794, 1084
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.