FvH4_7g23750
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
18460363 .. 18463538
3176 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23750.t1

Sequence Viewer

Length: 1197 bp
ATGACACTCCCAAACGACGCCGCTCCTCCCAACCCCGCCGAGCCGGGCGCGTCACCGCCACACGCCGATGAGGGCGGTGAGATCGCCGCTGGGAAAGTGAGGGGATCGTGGTCACCGAAAGAGGACGAGCTGCTCACTCGGCTGGTCACCCAGTTTGGCGCCAGAAACTGGAGCGTCATCGCCAGAGGAATTCCGGGCCGCTCCGGCAAGTCTTGCCGGCTCCGGTGGTGCAATCAGCTCAATCCCGGCGTAAAGCGCAAACCTTTTTCCGATGAAGAAGATCGTATCATAGTTGCAGCTCATGCCACTCATGGGAACAGATGGTCGATAATTGCAAAGCTCCTTCCAGGTAGAACAGATAATGCAATTAAGAATCACTGGAATTCTACTTTAAAGCGTGGGAGGAAGTATATCCCTCGAACTAGAAACATGAAGGAAGACAGTGGCGTAGAGAGATCAAAGACATCCTCTGAAGAAACCGTGTCAGTTGGCAATATCAGTTCAGTCAGGATTCCTGAAGGAAGAGAAGTCTTTATAGTAGACAACAGCTCTAACCAGAACCAGGACGGTGTTGGTGTAACTGAATTGAAAGATAATCCAACTCTTGTTGCTGAATTAAAAGAAGACTCCACCCTCTGTCGTCCAGTGGCACGAGTCAGTGCTTTTAGTGCTTACAACTCTTCTAATGGCTCCGTTGTTCCAAGGCCAGTCCCAATTCCTGGCCCTTTGGTCCAAACATCTAAGTTAAATTTAGACTTCTGCAACTCACTTGAGGGTGATTGCAATGAGCCTATGGTTCCTCTGCATTGTGGCCACGGTTGCTGTGATCGAAGGCATGTGCATTCTGAAAGCTCATTGTTGGGGCCTGAGTTTATTGACTATGAGGAGCCTCCCTCCTTCTCCAGCCCTGAATTCATCTCTTGTGCTACAGATATGAACAATGTTGCATGGATTAAGAGTGGCCTTGAGAATCGTGAGACAATAAGAGTAGCAGAGAATGTAGCAAGCCAGAGATTCTCACAAGGGACACTTGCTACTCCGCAAATGGGGTATTATGAAATGAATATGATGAATGGCCACATGCGCTTCGTGGATGGACAGAACAGGCTAATGACGGGTATGATGACAGAAATGCTTTCAACCCAGATGCCTAGACAAACTTTTGCCATGCCAACTGAAGTTAAGGGATTGAGCTAG

Protein Analysis

399

Amino Acids

43.82

Weight (kDa)

6.77

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 34 - 80 1.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 37 - 95 2e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 86 - 130 1.5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 89 - 138 6.7e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011821)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccB7I CCANNNNNTGG 2 cut(s) 168, 719
AccBSI CCGCTC 2 cut(s) 23, 201
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 50
AciI CCGC 7 cut(s) 21, 36, 56, 75, 87, 199, 1040
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 2 cut(s) 811, 1075
AcsI RAATTY 4 cut(s) 189, 382, 748, 911
AcuI CTGAAG 3 cut(s) 492, 537, 1197
AcyI GRCGYC 2 cut(s) 18, 159
AfiI CCNNNNNNNGG 5 cut(s) 168, 312, 562, 719, 1046
AgsI TTSAA 2 cut(s) 589, 1140
AjnI CCWGG 3 cut(s) 346, 561, 718
AluBI AGCT 7 cut(s) 130, 238, 299, 340, 549, 852, 1194
AluI AGCT 7 cut(s) 130, 238, 299, 340, 549, 852, 1194
Alw26I GTCTC 1 cut(s) 971
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 168
AoxI GGCC 7 cut(s) 196, 704, 721, 811, 863, 961, 1075
ApeKI GCWGC 2 cut(s) 130, 296
ApoI RAATTY 4 cut(s) 189, 382, 748, 911
AspLEI GCGC 4 cut(s) 50, 161, 258, 1086
AspS9I GGNCC 4 cut(s) 196, 722, 730, 863
AsuC2I CCSGG 3 cut(s) 45, 195, 246
AsuHPI GGTGA 5 cut(s) 45, 89, 105, 139, 788
AvaII GGWCC 1 cut(s) 730
BalI TGGCCA 2 cut(s) 813, 1077
BanI GGYRCC 1 cut(s) 158
BauI CACGAG 1 cut(s) 651
BbsI GAAGAC 2 cut(s) 444, 630
BbvI GCAGC 2 cut(s) 117, 308
BccI CCATC 2 cut(s) 315, 1088
BciT130I CCWGG 3 cut(s) 348, 563, 720
BcnI CCSGG 3 cut(s) 45, 195, 246
BcoDI GTCTC 1 cut(s) 971
BfaI CTAG 3 cut(s) 423, 1152, 1195
BfmI CTRYAG 1 cut(s) 927
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 204
BisI GCNGC 5 cut(s) 21, 87, 131, 199, 297
BlsI GCNGC 5 cut(s) 22, 88, 132, 200, 298
Bme1390I CCNGG 6 cut(s) 45, 195, 246, 348, 563, 720
Bme18I GGWCC 1 cut(s) 730
BmgT120I GGNCC 4 cut(s) 196, 722, 730, 863
BmiI GGNNCC 6 cut(s) 160, 221, 691, 798, 864, 888
BmrFI CCNGG 6 cut(s) 45, 195, 246, 348, 563, 720
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 1137
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 2 cut(s) 444, 630
BplI GAGNNNNNCTC 2 cut(s) 878, 910
BpmI CTGGAG 2 cut(s) 190, 886
BpuEI CTTGAG 2 cut(s) 791, 986
BpuMI CCSGG 3 cut(s) 45, 195, 246
BsaHI GRCGYC 2 cut(s) 18, 159
BsaJI CCNNGG 2 cut(s) 701, 814
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 312, 562, 719, 1046
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 5 cut(s) 151, 173, 383, 644, 707
Bse3DI GCAATG 1 cut(s) 790
BseBI CCWGG 3 cut(s) 348, 563, 720
BseDI CCNNGG 2 cut(s) 701, 814
BseGI GGATG 2 cut(s) 464, 1099
BseLI CCNNNNNNNGG 5 cut(s) 168, 312, 562, 719, 1046
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 5 cut(s) 151, 173, 383, 644, 707
BseRI GAGGAG 2 cut(s) 15, 899
BseXI GCAGC 2 cut(s) 117, 308
BseYI CCCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 7 cut(s) 198, 706, 723, 813, 865, 963, 1077
BshNI GGYRCC 1 cut(s) 158
BsiSI CCGG 6 cut(s) 44, 194, 204, 217, 223, 246
BslFI GGGAC 2 cut(s) 695, 1039
BslI CCNNNNNNNGG 5 cut(s) 168, 312, 562, 719, 1046
BsmAI GTCTC 1 cut(s) 971
BsmFI GGGAC 2 cut(s) 695, 1039
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 7 cut(s) 198, 706, 723, 813, 865, 963, 1077
Bsp143I GATC 5 cut(s) 81, 104, 280, 455, 826
BspACI CCGC 7 cut(s) 21, 36, 56, 75, 87, 199, 1040
BspANI GGCC 7 cut(s) 198, 706, 723, 813, 865, 963, 1077
BspCNI CTCAG 1 cut(s) 859
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 6 cut(s) 160, 221, 691, 798, 864, 888
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 158
BsrBI CCGCTC 2 cut(s) 23, 201
BsrDI GCAATG 1 cut(s) 790
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 5 cut(s) 151, 173, 383, 644, 707
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 2 cut(s) 701, 814
BssMI GATC 5 cut(s) 81, 104, 280, 455, 826
BssNI GRCGYC 2 cut(s) 18, 159
BssSI CACGAG 1 cut(s) 651
BssT1I CCWWGG 1 cut(s) 701
Bst2BI CACGAG 1 cut(s) 651
Bst2UI CCWGG 3 cut(s) 348, 563, 720
Bst4CI ACNGT 4 cut(s) 443, 481, 569, 818
Bst6I CTCTTC 2 cut(s) 517, 685
BstACI GRCGYC 2 cut(s) 18, 159
BstAPI GCANNNNNTGC 2 cut(s) 213, 302
BstC8I GCNNGC 2 cut(s) 218, 1006
BstDEI CTNAG 2 cut(s) 741, 867
BstDSI CCRYGG 1 cut(s) 814
BstEII GGTNACC 2 cut(s) 111, 145
BstF5I GGATG 2 cut(s) 464, 1099
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 4 cut(s) 50, 161, 258, 1086
BstKTI GATC 5 cut(s) 84, 107, 283, 458, 829
BstMAI GTCTC 1 cut(s) 971
BstMBI GATC 5 cut(s) 81, 104, 280, 455, 826
BstMWI GCNNNNNNNGC 8 cut(s) 139, 204, 213, 255, 302, 668, 819, 1083
BstNI CCWGG 3 cut(s) 348, 563, 720
BstNSI RCATGY 2 cut(s) 839, 1084
BstPI GGTNACC 2 cut(s) 111, 145
BstSCI CCNGG 6 cut(s) 43, 193, 244, 346, 561, 718
BstSFI CTRYAG 1 cut(s) 927
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 117, 308
BstV2I GAAGAC 2 cut(s) 444, 630
BsuRI GGCC 7 cut(s) 198, 706, 723, 813, 865, 963, 1077
BtgI CCRYGG 1 cut(s) 814
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 464, 1099
BtsIMutI CAGTG 4 cut(s) 376, 448, 651, 664
Cac8I GCNNGC 2 cut(s) 218, 1006
CaiI CAGNNNCTG 1 cut(s) 168
CfoI GCGC 4 cut(s) 50, 161, 258, 1086
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 4 cut(s) 196, 722, 730, 863
CseI GACGC 3 cut(s) 26, 39, 163
CviAII CATG 7 cut(s) 302, 311, 430, 836, 948, 1081, 1168
DdeI CTNAG 2 cut(s) 741, 867
DinI GGCGCC 1 cut(s) 160
DpnI GATC 5 cut(s) 83, 106, 282, 457, 828
DpnII GATC 5 cut(s) 81, 104, 280, 455, 826
DraI TTTAAA 1 cut(s) 393
EaeI YGGCCR 2 cut(s) 811, 1075
Eam1104I CTCTTC 2 cut(s) 517, 685
EarI CTCTTC 2 cut(s) 517, 685
Eco130I CCWWGG 1 cut(s) 701
Eco47I GGWCC 1 cut(s) 730
Eco57I CTGAAG 3 cut(s) 492, 537, 1197
Eco91I GGTNACC 2 cut(s) 111, 145
EcoO109I RGGNCCY 1 cut(s) 863
EcoO65I GGTNACC 2 cut(s) 111, 145
EcoRI GAATTC 3 cut(s) 189, 382, 911
EcoRII CCWGG 3 cut(s) 346, 561, 718
EcoT14I CCWWGG 1 cut(s) 701
EgeI GGCGCC 1 cut(s) 160
EheI GGCGCC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 7 cut(s) 305, 314, 433, 839, 951, 1084, 1171
FalI AAGNNNNNCTT 2 cut(s) 1014, 1046
FaqI GGGAC 2 cut(s) 695, 1039
FatI CATG 7 cut(s) 301, 310, 429, 835, 947, 1080, 1167
FauI CCCGC 1 cut(s) 43
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 5 cut(s) 21, 87, 131, 199, 297
FokI GGATG 2 cut(s) 451, 1106
Fsp4HI GCNGC 5 cut(s) 21, 87, 131, 199, 297
FspBI CTAG 3 cut(s) 423, 1152, 1195
GlaI GCGC 4 cut(s) 49, 160, 257, 1085
GluI GCNGC 5 cut(s) 21, 87, 131, 199, 297
GsaI CCCAGC 1 cut(s) 93
GsuI CTGGAG 2 cut(s) 190, 886
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 7 cut(s) 198, 706, 723, 813, 865, 963, 1077
HapII CCGG 6 cut(s) 44, 194, 204, 217, 223, 246
HgaI GACGC 3 cut(s) 26, 39, 163
HhaI GCGC 4 cut(s) 50, 161, 258, 1086
Hin1I GRCGYC 2 cut(s) 18, 159
Hin1II CATG 7 cut(s) 305, 314, 433, 839, 951, 1084, 1171
Hin6I GCGC 4 cut(s) 48, 159, 256, 1084
HinP1I GCGC 4 cut(s) 48, 159, 256, 1084
HinfI GANTC 6 cut(s) 373, 511, 626, 654, 970, 1014
HpaII CCGG 6 cut(s) 44, 194, 204, 217, 223, 246
HphI GGTGA 5 cut(s) 45, 89, 105, 139, 788
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 3 cut(s) 271, 472, 847
Hpy188III TCNNGA 3 cut(s) 508, 515, 974
Hpy8I GTNNAC 1 cut(s) 541
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 5 cut(s) 353, 427, 512, 825, 907
HpyCH4III ACNGT 4 cut(s) 443, 481, 569, 818
HpyCH4V TGCA 9 cut(s) 231, 296, 335, 365, 762, 783, 805, 841, 947
HpyF10VI GCNNNNNNNGC 8 cut(s) 139, 204, 213, 255, 302, 668, 819, 1083
HpyF3I CTNAG 2 cut(s) 741, 867
Hsp92I GRCGYC 2 cut(s) 18, 159
Hsp92II CATG 7 cut(s) 305, 314, 433, 839, 951, 1084, 1171
HspAI GCGC 4 cut(s) 48, 159, 256, 1084
KasI GGCGCC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 216
KroNI GCCGGC 1 cut(s) 218
Kzo9I GATC 5 cut(s) 81, 104, 280, 455, 826
LmnI GCTCC 7 cut(s) 28, 171, 206, 225, 345, 695, 886
Lsp1109I GCAGC 2 cut(s) 117, 308
LweI GCATC 1 cut(s) 1137
MaeI CTAG 3 cut(s) 423, 1152, 1195
MaeIII GTNAC 4 cut(s) 51, 111, 145, 577
MalI GATC 5 cut(s) 83, 106, 282, 457, 828
MbiI CCGCTC 2 cut(s) 23, 201
MboI GATC 5 cut(s) 81, 104, 280, 455, 826
MboII GAAGA 7 cut(s) 287, 290, 449, 485, 534, 635, 672
MlsI TGGCCA 2 cut(s) 813, 1077
MluCI AATT 9 cut(s) 189, 330, 366, 382, 584, 614, 714, 748, 911
MluNI TGGCCA 2 cut(s) 813, 1077
Mly113I GGCGCC 1 cut(s) 159
MlyI GAGTC 2 cut(s) 620, 663
MmeI TCCRAC 1 cut(s) 623
Mox20I TGGCCA 2 cut(s) 813, 1077
MroNI GCCGGC 1 cut(s) 216
MscI TGGCCA 2 cut(s) 813, 1077
MseI TTAA 6 cut(s) 369, 392, 617, 746, 954, 1182
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 2 cut(s) 813, 1077
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 6 cut(s) 44, 194, 204, 217, 223, 246
MspR9I CCNGG 6 cut(s) 45, 195, 246, 348, 563, 720
Mva1269I GAATGC 1 cut(s) 841
MvaI CCWGG 3 cut(s) 348, 563, 720
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 8 cut(s) 139, 204, 213, 255, 302, 668, 819, 1083
NaeI GCCGGC 1 cut(s) 218
NarI GGCGCC 1 cut(s) 159
NciI CCSGG 3 cut(s) 45, 195, 246
NdeII GATC 5 cut(s) 81, 104, 280, 455, 826
NgoMIV GCCGGC 1 cut(s) 216
NlaIII CATG 7 cut(s) 305, 314, 433, 839, 951, 1084, 1171
NlaIV GGNNCC 6 cut(s) 160, 221, 691, 798, 864, 888
NmeAIII GCCGAG 2 cut(s) 64, 118
NmuCI GTSAC 3 cut(s) 51, 111, 145
NspI RCATGY 2 cut(s) 839, 1084
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 841
PdiI GCCGGC 1 cut(s) 218
PfeI GAWTC 4 cut(s) 373, 511, 970, 1014
PflMI CCANNNNNTGG 2 cut(s) 168, 719
PkrI GCNGC 5 cut(s) 22, 88, 132, 200, 298
PleI GAGTC 2 cut(s) 620, 662
PluTI GGCGCC 1 cut(s) 162
PpsI GAGTC 2 cut(s) 620, 662
Psp6I CCWGG 3 cut(s) 346, 561, 718
PspEI GGTNACC 2 cut(s) 111, 145
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 3 cut(s) 346, 561, 718
PspN4I GGNNCC 6 cut(s) 160, 221, 691, 798, 864, 888
PspPI GGNCC 4 cut(s) 196, 722, 730, 863
PstNI CAGNNNCTG 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 6 cut(s) 369, 392, 617, 746, 954, 1182
SatI GCNGC 5 cut(s) 21, 87, 131, 199, 297
Sau3AI GATC 5 cut(s) 81, 104, 280, 455, 826
Sau96I GGNCC 4 cut(s) 196, 722, 730, 863
SchI GAGTC 2 cut(s) 620, 663
ScrFI CCNGG 6 cut(s) 45, 195, 246, 348, 563, 720
SetI ASST 9 cut(s) 132, 240, 265, 301, 342, 352, 551, 854, 1196
SfaNI GCATC 1 cut(s) 1137
SfcI CTRYAG 1 cut(s) 927
SfoI GGCGCC 1 cut(s) 160
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 770, 965
SmoI CTYRAG 2 cut(s) 770, 965
Sse9I AATT 9 cut(s) 189, 330, 366, 382, 584, 614, 714, 748, 911
SsiI CCGC 7 cut(s) 21, 36, 56, 75, 87, 199, 1040
SspDI GGCGCC 1 cut(s) 158
SspMI CTAG 3 cut(s) 423, 1152, 1195
StyD4I CCNGG 6 cut(s) 43, 193, 244, 346, 561, 718
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 4 cut(s) 443, 481, 569, 818
TaqI TCGA 3 cut(s) 326, 418, 829
TasI AATT 9 cut(s) 189, 330, 366, 382, 584, 614, 714, 748, 911
TauI GCSGC 3 cut(s) 23, 89, 201
TfiI GAWTC 4 cut(s) 373, 511, 970, 1014
Tru1I TTAA 6 cut(s) 369, 392, 617, 746, 954, 1182
Tru9I TTAA 6 cut(s) 369, 392, 617, 746, 954, 1182
TscAI CASTG 4 cut(s) 383, 448, 651, 664
TseFI GTSAC 3 cut(s) 51, 111, 145
TseI GCWGC 2 cut(s) 130, 296
Tsp45I GTSAC 3 cut(s) 51, 111, 145
TspDTI ATGAA 7 cut(s) 288, 446, 904, 950, 1071, 1076, 1085
TspGWI ACGGA 1 cut(s) 682
TspRI CASTG 4 cut(s) 383, 448, 651, 664
Van91I CCANNNNNTGG 2 cut(s) 168, 719
VpaK11BI GGWCC 1 cut(s) 730
XapI RAATTY 4 cut(s) 189, 382, 748, 911
XceI RCATGY 2 cut(s) 839, 1084
XcmI CCANNNNNNNNNTGG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 3 cut(s) 423, 1152, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.