Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011501

Physical Location & Seq

Genomic Coordinates Forward (+)

16785173 .. 16787590

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGCGATCTACTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGTTTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCCATCCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCATTCAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCTGATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAGTCTCCTCCTAAGGTGATTCATCTAAACAAAAGGAAATGGATTGAAGAGAGTACTTACCCACATTTTACAATGATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCATGTTCACTCCTTTGTATTTCCTTGACACTAGTGGATATGCGTTTACATATCCTCTTGCTCGGATCTTTGGTTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGTTCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATCTACTTGCAAATTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATGTACTCATTTAGCTATGGTTAACTCTTCGTGGACTAAGTCCCATATCGAAGTGCTTTGGAGAATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCGTTTCCTCTTGAACGATCATCTGATCCTCCTAAAATCATATCAGTTGCTCAATTTCGTCCTGAGAAGGCTCATATGCTTCAGCTTGAGGCCTTTTCACTAGCCTTAGAGAAGCTAGATGCAGACGTCCCTAGACCCAAGCTCCAATTTGTGGGAAGTTGTAGAAACAATTCAGATGAAGAACGTCTGCAGAAATTGAAAGACAGAGCAGTGGAACTAAAAGTAGATGGAGACGTGCAATTCTATAAAAATGCCATGTACAGAGAACTAGTGGAACTGTTAGGAAATGCAGTTGCAGGACTGCATGGGATGATAGATGAACACTTTGGTATAAGTGTTGTTGAGTACATGGCTGCTGGTGCAATCCCAATAGCTCACAACTCAGCTGGACCTAAAATGGACATTGTGTTGGAAGAAGACGGACAAAAAACCGGGTTTCTTGCTGAGACTGTGGAGGAATACGCTGAAGCGATCCTTGAGATTGTGAAGATGAATGAAACAGAGAGGCTTAAAATGGCTGAATCTGCTAGAAAACGAGCGGCAAGGTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACTGCGATTCGACCCATTTTCACAGGTCCTCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0001101 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0033577 GO:0033993 GO:0034645 GO:0036211 GO:0042175 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG11_N Glycos_transf_1

Protein Analysis

463

Amino Acids

52.57

Weight (kDa)

7.99

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALG11_N	PF15924	34 - 239	1.6e-89	ALG11 mannosyltransferase N-terminus
Glycos_transf_1	PF00534	262 - 437	5.5e-26	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	269 - 420	5.8e-12	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40190
fragaria_vesca	FvH4_7g24680 FvH4_7g24680 FvH4_7g24680 FvH4_7g24680
malus_domestica	MD01G1154800.v1.1 MD07G1223900.v1.1
prunus_persica	Prupe.2G252400_v2.0.a1
pyrus_communis	pycom01g17220 pycom07g20250
rosa_chinensis	RchiOBHm_Chr1g0370541
rosa_laevigata	RLG00000027028
rosa_multiflora	Rmu_sc0002021.1_g000019 Rmu_sc0021895.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286460
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG366700 Rh1BG330200 Rh1CG344400
rosa_wichuraiana	Rw1G032270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	903
AccB7I	CCANNNNNTGG	1 cut(s)	925
AccBSI	CCGCTC	1 cut(s)	1313
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	258
AciI	CCGC	5 cut(s)	104, 141, 144, 749, 1313
AclWI	GGATC	3 cut(s)	479, 794, 1240
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	5 cut(s)	269, 747, 755, 839, 1260
AcyI	GRCGYC	1 cut(s)	900
AfaI	GTAC	5 cut(s)	125, 340, 661, 1034, 1121
AfiI	CCNNNNNNNGG	1 cut(s)	925
AgsI	TTSAA	5 cut(s)	182, 332, 788, 973, 1351
AhlI	ACTAGT	2 cut(s)	437, 1042
AjiI	CACGTC	1 cut(s)	1009
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	3 cut(s)	294, 999, 1214
AlwI	GGATC	3 cut(s)	479, 794, 1240
AoxI	GGCC	1 cut(s)	864
ApeKI	GCWGC	1 cut(s)	1127
ApoI	RAATTY	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	943
AspLEI	GCGC	2 cut(s)	167, 260
AspS9I	GGNCC	2 cut(s)	1163, 1379
AsuC2I	CCSGG	1 cut(s)	1207
AsuHPI	GGTGA	3 cut(s)	208, 272, 313
AvaII	GGWCC	2 cut(s)	1163, 1379
AxyI	CCTNAGG	1 cut(s)	297
BauI	CACGAG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	1197
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	1114
BccI	CCATC	3 cut(s)	126, 640, 995
BceAI	ACGGC	3 cut(s)	32, 152, 245
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	1207
BcoDI	GTCTC	3 cut(s)	294, 999, 1214
BcuI	ACTAGT	2 cut(s)	437, 1042
BfaI	CTAG	6 cut(s)	438, 875, 890, 906, 1043, 1302
BfmI	CTRYAG	1 cut(s)	962
BisI	GCNGC	4 cut(s)	142, 145, 1128, 1314
BlpI	GCTNAGC	1 cut(s)	247
BlsI	GCNGC	4 cut(s)	143, 146, 1129, 1315
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	1207
Bme18I	GGWCC	2 cut(s)	1163, 1379
BmgBI	CACGTC	1 cut(s)	1009
BmgT120I	GGNCC	2 cut(s)	1163, 1379
BmrFI	CCNGG	1 cut(s)	1207
BmsI	GCATC	2 cut(s)	559, 883
BpiI	GAAGAC	1 cut(s)	1197
Bpu1102I	GCTNAGC	1 cut(s)	247
BpuEI	CTTGAG	2 cut(s)	881, 1271
BpuMI	CCSGG	1 cut(s)	1207
Bsa29I	ATCGAT	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	900
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	1 cut(s)	925
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	576
BseCI	ATCGAT	1 cut(s)	268
BseGI	GGATG	4 cut(s)	118, 642, 651, 1089
BseLI	CCNNNNNNNGG	1 cut(s)	925
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	4 cut(s)	47, 828, 1170, 1209
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	1114
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	866
BshVI	ATCGAT	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	219, 1206
BslFI	GGGAC	2 cut(s)	682, 887
BslI	CCNNNNNNNGG	1 cut(s)	925
BsmAI	GTCTC	3 cut(s)	294, 999, 1214
BsmBI	CGTCTC	1 cut(s)	999
BsmFI	GGGAC	2 cut(s)	682, 887
BsnI	GGCC	1 cut(s)	866
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	1032
Bsp1720I	GCTNAGC	1 cut(s)	247
BspACI	CCGC	5 cut(s)	104, 141, 144, 749, 1313
BspANI	GGCC	1 cut(s)	866
BspCNI	CTCAG	4 cut(s)	48, 829, 1169, 1210
BspDI	ATCGAT	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	966
BspPI	GGATC	3 cut(s)	479, 794, 1240
BsrBI	CCGCTC	1 cut(s)	1313
BsrDI	GCAATG	1 cut(s)	576
BsrGI	TGTACA	1 cut(s)	1032
BssNI	GRCGYC	1 cut(s)	900
BssSI	CACGAG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	534
Bst4CI	ACNGT	5 cut(s)	137, 206, 1053, 1225, 1335
Bst6I	CTCTTC	3 cut(s)	238, 327, 688
BstACI	GRCGYC	1 cut(s)	900
BstAUI	TGTACA	1 cut(s)	1032
BstF5I	GGATG	4 cut(s)	118, 642, 651, 1089
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	167, 260
BstMAI	GTCTC	3 cut(s)	294, 999, 1214
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 257, 398, 578, 1133, 1298
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	1205
BstSFI	CTRYAG	1 cut(s)	962
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	1114
BstV2I	GAAGAC	1 cut(s)	1197
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
Bsu15I	ATCGAT	1 cut(s)	268
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	866
BsuTUI	ATCGAT	1 cut(s)	268
BtrI	CACGTC	1 cut(s)	1009
BtsCI	GGATG	4 cut(s)	118, 642, 651, 1089
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	1 cut(s)	990
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	167, 260
Cfr13I	GGNCC	2 cut(s)	1163, 1379
ClaI	ATCGAT	1 cut(s)	268
Csp6I	GTAC	5 cut(s)	124, 339, 660, 1033, 1120
CviAII	CATG	6 cut(s)	227, 409, 657, 1030, 1079, 1123
CviQI	GTAC	5 cut(s)	124, 339, 660, 1033, 1120
Eam1104I	CTCTTC	3 cut(s)	238, 327, 688
EarI	CTCTTC	3 cut(s)	238, 327, 688
Eco147I	AGGCCT	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	1163, 1379
Eco57I	CTGAAG	5 cut(s)	269, 747, 755, 839, 1260
Eco81I	CCTNAGG	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	1379
EcoRI	GAATTC	1 cut(s)	720
Esp3I	CGTCTC	1 cut(s)	999
FaeI	CATG	6 cut(s)	230, 412, 660, 1033, 1082, 1126
FalI	AAGNNNNNCTT	2 cut(s)	1233, 1265
FaqI	GGGAC	2 cut(s)	682, 887
FatI	CATG	6 cut(s)	226, 408, 656, 1029, 1078, 1122
FauI	CCCGC	1 cut(s)	756
FauNDI	CATATG	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	4 cut(s)	142, 145, 1128, 1314
FokI	GGATG	4 cut(s)	105, 649, 658, 1096
Fsp4HI	GCNGC	4 cut(s)	142, 145, 1128, 1314
FspBI	CTAG	6 cut(s)	438, 875, 890, 906, 1043, 1302
GlaI	GCGC	2 cut(s)	166, 259
GluI	GCNGC	4 cut(s)	142, 145, 1128, 1314
HaeIII	GGCC	1 cut(s)	866
HapII	CCGG	2 cut(s)	219, 1206
HhaI	GCGC	2 cut(s)	167, 260
Hin1I	GRCGYC	1 cut(s)	900
Hin1II	CATG	6 cut(s)	230, 412, 660, 1033, 1082, 1126
Hin6I	GCGC	2 cut(s)	165, 258
HinP1I	GCGC	2 cut(s)	165, 258
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	7 cut(s)	111, 230, 270, 304, 370, 1295, 1360
HpaI	GTTAAC	1 cut(s)	679
HpaII	CCGG	2 cut(s)	219, 1206
HphI	GGTGA	3 cut(s)	208, 272, 313
Hpy166II	GTNNAC	8 cut(s)	126, 280, 385, 414, 453, 679, 690, 745
Hpy188I	TCNGA	8 cut(s)	57, 241, 369, 471, 546, 799, 949, 1327
Hpy188III	TCNNGA	9 cut(s)	34, 182, 194, 200, 227, 725, 765, 785, 836
Hpy8I	GTNNAC	8 cut(s)	126, 280, 385, 414, 453, 679, 690, 745
Hpy99I	CGWCG	2 cut(s)	137, 258
HpyAV	CCTTC	2 cut(s)	293, 835
HpyCH4III	ACNGT	5 cut(s)	137, 206, 1053, 1225, 1335
HpyCH4IV	ACGT	4 cut(s)	100, 900, 958, 1008
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 257, 398, 578, 1133, 1298
HpySE526I	ACGT	4 cut(s)	100, 900, 958, 1008
Hsp92I	GRCGYC	1 cut(s)	900
Hsp92II	CATG	6 cut(s)	230, 412, 660, 1033, 1082, 1126
HspAI	GCGC	2 cut(s)	165, 258
Ksp22I	TGATCA	1 cut(s)	75
KspAI	GTTAAC	1 cut(s)	679
LmnI	GCTCC	1 cut(s)	921
Lsp1109I	GCAGC	1 cut(s)	1114
LweI	GCATC	2 cut(s)	559, 883
MaeI	CTAG	6 cut(s)	438, 875, 890, 906, 1043, 1302
MaeII	ACGT	4 cut(s)	100, 900, 958, 1008
MbiI	CCGCTC	1 cut(s)	1313
MfeI	CAATTG	1 cut(s)	589
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	8 cut(s)	589, 608, 720, 827, 920, 943, 968, 1013
MlyI	GAGTC	2 cut(s)	224, 379
MmeI	TCCRAC	2 cut(s)	533, 1164
MroXI	GAANNNNTTC	1 cut(s)	943
MseI	TTAA	4 cut(s)	171, 678, 1284, 1386
MspA1I	CMGCKG	1 cut(s)	1160
MspI	CCGG	2 cut(s)	219, 1206
MspR9I	CCNGG	1 cut(s)	1207
MunI	CAATTG	1 cut(s)	589
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	6 cut(s)	173, 257, 398, 578, 1133, 1298
NciI	CCSGG	1 cut(s)	1207
NdeI	CATATG	1 cut(s)	849
NlaIII	CATG	6 cut(s)	230, 412, 660, 1033, 1082, 1126
NspI	RCATGY	1 cut(s)	412
PagI	TCATGA	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	943
PfeI	GAWTC	5 cut(s)	111, 270, 304, 1295, 1360
PflFI	GACNNNGTC	2 cut(s)	206, 694
PflMI	CCANNNNNTGG	1 cut(s)	925
PkrI	GCNGC	4 cut(s)	143, 146, 1129, 1315
PleI	GAGTC	2 cut(s)	224, 378
PpsI	GAGTC	2 cut(s)	224, 378
PpuMI	RGGWCCY	1 cut(s)	1379
Psp5II	RGGWCCY	1 cut(s)	1379
PspPI	GGNCC	2 cut(s)	1163, 1379
PspPPI	RGGWCCY	1 cut(s)	1379
PstI	CTGCAG	1 cut(s)	966
PsuI	RGATCY	1 cut(s)	471
PsyI	GACNNNGTC	2 cut(s)	206, 694
PvuII	CAGCTG	1 cut(s)	1160
RsaI	GTAC	5 cut(s)	125, 340, 661, 1034, 1121
RsaNI	GTAC	5 cut(s)	124, 339, 660, 1033, 1120
SaqAI	TTAA	4 cut(s)	171, 678, 1284, 1386
SatI	GCNGC	4 cut(s)	142, 145, 1128, 1314
Sau96I	GGNCC	2 cut(s)	1163, 1379
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	2 cut(s)	224, 379
ScrFI	CCNGG	1 cut(s)	1207
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	559, 883
SfcI	CTRYAG	1 cut(s)	962
SinI	GGWCC	2 cut(s)	1163, 1379
SmlI	CTYRAG	2 cut(s)	860, 1250
SmoI	CTYRAG	2 cut(s)	860, 1250
SpeI	ACTAGT	2 cut(s)	437, 1042
Sse9I	AATT	8 cut(s)	589, 608, 720, 827, 920, 943, 968, 1013
SseBI	AGGCCT	1 cut(s)	866
SsiI	CCGC	5 cut(s)	104, 141, 144, 749, 1313
SspMI	CTAG	6 cut(s)	438, 875, 890, 906, 1043, 1302
StuI	AGGCCT	1 cut(s)	866
StyD4I	CCNGG	1 cut(s)	1205
TaaI	ACNGT	5 cut(s)	137, 206, 1053, 1225, 1335
TaiI	ACGT	4 cut(s)	103, 903, 961, 1011
TaqI	TCGA	3 cut(s)	268, 705, 1363
TasI	AATT	8 cut(s)	589, 608, 720, 827, 920, 943, 968, 1013
TatI	WGTACW	4 cut(s)	338, 659, 1032, 1119
TauI	GCSGC	3 cut(s)	144, 147, 1316
TfiI	GAWTC	5 cut(s)	111, 270, 304, 1295, 1360
Tru1I	TTAA	4 cut(s)	171, 678, 1284, 1386
Tru9I	TTAA	4 cut(s)	171, 678, 1284, 1386
TscAI	CASTG	1 cut(s)	990
TseI	GCWGC	1 cut(s)	1127
TspDTI	ATGAA	6 cut(s)	4, 296, 966, 1107, 1280, 1284
TspGWI	ACGGA	4 cut(s)	61, 111, 745, 1209
TspRI	CASTG	1 cut(s)	990
Tth111I	GACNNNGTC	2 cut(s)	206, 694
Van91I	CCANNNNNTGG	1 cut(s)	925
VpaK11BI	GGWCC	2 cut(s)	1163, 1379
XapI	RAATTY	1 cut(s)	720
XceI	RCATGY	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	943
XspI	CTAG	6 cut(s)	438, 875, 890, 906, 1043, 1302
ZraI	GACGTC	1 cut(s)	901
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.