Rroxscaffold_4G00286460
NAC Family

GDP-Man Man(3)GlcNAc(2)-PP-Dol

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
7471486 .. 7474456
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286460.1

Sequence Viewer

Length: 1284 bp
ATGCCTTACCAATTCTTCCTTTGGCCTCTGATCACTGTTCTATTCGCCTTAATCCTCAGAATCTCTCTACAAATTTTCACCGCCAGAAGCAACCGCCACCGCGCCGTCGCATTCTTCCACCCCTACACCAACGACGGCGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTCAAAGCCATCCAGGACGAAAACCCCAACCTTGACTGCGTCGTCTTCACCGGCGACCACGACTCCTCCCCTGACTCACTCGCTTCCCGAGCCGTCGATCGCTTTGGAGTCAAACTACTTCACCCACCAAAGGTGGTGTATCTGTACAAGCGGAAATGGATCGAGGAAGCCACGTACCCGAGATTGACTATGATCGGGCAGAGCCTGGGCTCTGTGTATCTATCATGGGAAGCACTGACCAAGTTCACTCCAGCTTACTATTTCGACACCAGTGGTTACGCCTTCACTTACCCAATTGCGAGGCTATTTGGCTGCAGAGTCATCTGCTACACACATTACCCTACAATCAGCTTGGACATGCTCTCTCGGGTTCGCCAGCGGAGCTCCATGTACAACAATGATGACTTCATTGCCCGGAGGTCTGTTTTGCGCGAATGGTACATTGATGATGATATTGCAATTCTAACAAATATGGCTGAGTTCAATTGGTTATCGCACTGCAAGATTGTGTACTACAATGTGTTTAGCTGGATGTATGGGATTGTAGGCTCTTGTGCACATCTTGCCATGGTCAACTCTTCGTGGACTCAGTCTCATATACAGAAGCTGTGGAAGATTCCGCAGCGAACTAAGCGTGTCTACCCTCCTTGCGATACTTCTGGACTTCAGGTGCTTCCTTTGGAAAGACCAGCTGATCCTGCAAAAATCATATCTGTTGCTCAGTTTCGGCCAGAGAAGGCACATGGTCTCCAACTTGAAGCCTTTGCAGCTGCAATAGGGAAATTAGATGCACACTTGCCCAGACCTAAGCTGCAGTTTGTGGGTAGTTGTCGGAATAAATCAGATGAGGAAAGATTAGAACATCTGAAAAATAAAGCAATTGAGCTGAAGGTGGACGGGGACGTGGAATTTCATAAAAATGTCATGTACAGGTCTGTGCCGAGGATTTTATCCTCGGGTGGTTTTCAAATTGACAGGGACTTGGTGCAACTTTTGGGCGGAGCCGTTGCAGGAATCCATTCAATGACAGATGAACACTTCGGAATAAGTGTTGTGGAGTATATGGCTGCAGGAGCCATCCCAATTGGTGGGCGTCTCATTTGTTATTTGAACTAA

Protein Analysis

427

Amino Acids

48.6

Weight (kDa)

8.82

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALG11_N PF15924 34 - 260 6.2e-83 ALG11 mannosyltransferase N-terminus
Glycos_transf_1 PF00534 285 - 418 2.7e-11 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011501)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 1256
AccI GTMKAC 1 cut(s) 807
AccII CGCG 2 cut(s) 102, 600
AclWI GGATC 2 cut(s) 335, 857
AcoI YGGCCR 1 cut(s) 896
AcsI RAATTY 2 cut(s) 72, 1076
AcuI CTGAAG 2 cut(s) 818, 1076
AcyI GRCGYC 1 cut(s) 1261
AfaI GTAC 6 cut(s) 314, 344, 560, 608, 680, 1097
AfiI CCNNNNNNNGG 2 cut(s) 298, 1256
AgsI TTSAA 5 cut(s) 652, 926, 1136, 1191, 1279
AjiI CACGTC 1 cut(s) 1072
AjnI CCWGG 2 cut(s) 180, 372
AluBI AGCT 9 cut(s) 422, 519, 552, 696, 775, 860, 938, 979, 1054
AluI AGCT 9 cut(s) 422, 519, 552, 696, 775, 860, 938, 979, 1054
Alw21I GWGCWC 3 cut(s) 159, 554, 727
Alw26I GTCTC 3 cut(s) 765, 920, 1268
Alw44I GTGCAC 1 cut(s) 723
AlwI GGATC 2 cut(s) 335, 857
AlwNI CAGNNNCTG 2 cut(s) 373, 775
Ama87I CYCGRG 4 cut(s) 255, 346, 534, 1123
AoxI GGCC 2 cut(s) 23, 896
ApaLI GTGCAC 1 cut(s) 723
ApeKI GCWGC 6 cut(s) 480, 790, 935, 938, 979, 1235
ApoI RAATTY 2 cut(s) 72, 1076
Asp700I GAANNNNTTC 1 cut(s) 1186
AspLEI GCGC 3 cut(s) 104, 167, 600
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 3 cut(s) 70, 208, 281
AvaI CYCGRG 4 cut(s) 255, 346, 534, 1123
BaeGI GKGCMC 1 cut(s) 727
BanII GRGCYC 2 cut(s) 380, 554
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 3 cut(s) 159, 554, 727
BbvI GCAGC 6 cut(s) 467, 802, 925, 947, 966, 1222
BccI CCATC 2 cut(s) 185, 1253
BceAI ACGGC 5 cut(s) 89, 151, 152, 245, 1157
BciT130I CCWGG 2 cut(s) 182, 374
BclI TGATCA 1 cut(s) 30
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 3 cut(s) 765, 920, 1268
BfmI CTRYAG 3 cut(s) 481, 980, 1236
BisI GCNGC 9 cut(s) 139, 142, 145, 481, 791, 936, 939, 980, 1236
BlsI GCNGC 9 cut(s) 140, 143, 146, 482, 792, 937, 940, 981, 1237
Bme1390I CCNGG 3 cut(s) 182, 374, 583
BmeT110I CYCGRG 4 cut(s) 255, 346, 534, 1123
BmgBI CACGTC 1 cut(s) 1072
BmiI GGNNCC 2 cut(s) 1171, 1243
BmrFI CCNGG 3 cut(s) 182, 374, 583
BmsI GCATC 1 cut(s) 946
BpiI GAAGAC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 975
BpuMI CCSGG 1 cut(s) 583
BsaAI YACGTR 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 1261
BsaI GGTCTC 1 cut(s) 920
BsaJI CCNNGG 4 cut(s) 373, 735, 1109, 1122
BsaXI ACNNNNNCTCC 6 cut(s) 215, 218, 245, 248, 900, 930
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 1256
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 438
Bse3DI GCAATG 1 cut(s) 576
BseBI CCWGG 2 cut(s) 182, 374
BseDI CCNNGG 4 cut(s) 373, 735, 1109, 1122
BseGI GGATG 3 cut(s) 177, 705, 1245
BseLI CCNNNNNNNGG 2 cut(s) 298, 1256
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 4 cut(s) 70, 636, 770, 902
BseNI ACTGG 1 cut(s) 438
BseRI GAGGAG 1 cut(s) 223
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 6 cut(s) 467, 802, 925, 947, 966, 1222
Bsh1236I CGCG 2 cut(s) 102, 600
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 25, 898
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 3 cut(s) 159, 554, 727
BsiHKCI CYCGRG 4 cut(s) 255, 346, 534, 1123
BsiSI CCGG 2 cut(s) 219, 583
BslFI GGGAC 2 cut(s) 1082, 1160
BslI CCNNNNNNNGG 2 cut(s) 298, 1256
BsmAI GTCTC 3 cut(s) 765, 920, 1268
BsmBI CGTCTC 1 cut(s) 1268
BsmFI GGGAC 2 cut(s) 1082, 1160
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 2 cut(s) 25, 898
Bso31I GGTCTC 1 cut(s) 920
BsoBI CYCGRG 4 cut(s) 255, 346, 534, 1123
Bsp1286I GDGCHC 4 cut(s) 159, 380, 554, 727
Bsp1407I TGTACA 3 cut(s) 312, 558, 1095
Bsp143I GATC 5 cut(s) 30, 265, 327, 360, 862
Bsp19I CCATGG 1 cut(s) 735
BspANI GGCC 2 cut(s) 25, 898
BspCNI CTCAG 4 cut(s) 69, 637, 769, 901
BspFNI CGCG 2 cut(s) 102, 600
BspLI GGNNCC 2 cut(s) 1171, 1243
BspMAI CTGCAG 3 cut(s) 485, 984, 1240
BspPI GGATC 2 cut(s) 335, 857
BspTNI GGTCTC 1 cut(s) 920
BsrDI GCAATG 1 cut(s) 576
BsrFI RCCGGY 1 cut(s) 218
BsrGI TGTACA 3 cut(s) 312, 558, 1095
BsrI ACTGG 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 4 cut(s) 373, 735, 1109, 1122
BssMI GATC 5 cut(s) 30, 265, 327, 360, 862
BssNI GRCGYC 1 cut(s) 1261
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 182, 374
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 751
BstACI GRCGYC 1 cut(s) 1261
BstAPI GCANNNNNTGC 1 cut(s) 731
BstAUI TGTACA 3 cut(s) 312, 558, 1095
BstBAI YACGTR 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 545
BstDEI CTNAG 6 cut(s) 56, 645, 756, 798, 888, 975
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 3 cut(s) 177, 705, 1245
BstFNI CGCG 2 cut(s) 102, 600
BstHHI GCGC 3 cut(s) 104, 167, 600
BstKTI GATC 5 cut(s) 33, 268, 330, 363, 865
BstMAI GTCTC 3 cut(s) 765, 920, 1268
BstMBI GATC 5 cut(s) 30, 265, 327, 360, 862
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 9 cut(s) 144, 173, 257, 549, 731, 799, 866, 935, 1241
BstNI CCWGG 2 cut(s) 182, 374
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 3 cut(s) 180, 372, 581
BstSFI CTRYAG 3 cut(s) 481, 980, 1236
BstSLI GKGCMC 1 cut(s) 727
BstUI CGCG 2 cut(s) 102, 600
BstV1I GCAGC 6 cut(s) 467, 802, 925, 947, 966, 1222
BstV2I GAAGAC 1 cut(s) 205
BsuRI GGCC 2 cut(s) 25, 898
BtgI CCRYGG 1 cut(s) 735
BtrI CACGTC 1 cut(s) 1072
BtsCI GGATG 3 cut(s) 177, 705, 1245
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 4 cut(s) 33, 401, 445, 664
Cac8I GCNNGC 1 cut(s) 545
CaiI CAGNNNCTG 2 cut(s) 373, 775
CfoI GCGC 3 cut(s) 104, 167, 600
Cfr10I RCCGGY 1 cut(s) 218
CseI GACGC 2 cut(s) 196, 1250
Csp6I GTAC 6 cut(s) 313, 343, 559, 607, 679, 1096
CviAII CATG 6 cut(s) 393, 526, 556, 736, 911, 1093
CviQI GTAC 6 cut(s) 313, 343, 559, 607, 679, 1096
DdeI CTNAG 6 cut(s) 56, 645, 756, 798, 888, 975
DpnI GATC 5 cut(s) 32, 267, 329, 362, 864
DpnII GATC 5 cut(s) 30, 265, 327, 360, 862
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 896
Eam1104I CTCTTC 1 cut(s) 751
EarI CTCTTC 1 cut(s) 751
EciI GGCGGA 1 cut(s) 1182
Ecl136II GAGCTC 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 2 cut(s) 380, 554
Eco31I GGTCTC 1 cut(s) 920
Eco53kI GAGCTC 1 cut(s) 552
Eco57I CTGAAG 2 cut(s) 818, 1076
Eco88I CYCGRG 4 cut(s) 255, 346, 534, 1123
EcoICRI GAGCTC 1 cut(s) 552
EcoRII CCWGG 2 cut(s) 180, 372
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 2 cut(s) 380, 554
ErhI CCWWGG 1 cut(s) 735
Esp3I CGTCTC 1 cut(s) 1268
FaeI CATG 6 cut(s) 396, 529, 559, 739, 914, 1096
FaqI GGGAC 2 cut(s) 1082, 1160
FatI CATG 6 cut(s) 392, 525, 555, 735, 910, 1092
FbaI TGATCA 1 cut(s) 30
FblI GTMKAC 1 cut(s) 807
Fnu4HI GCNGC 9 cut(s) 139, 142, 145, 481, 791, 936, 939, 980, 1236
FokI GGATG 3 cut(s) 164, 712, 1232
FriOI GRGCYC 2 cut(s) 380, 554
Fsp4HI GCNGC 9 cut(s) 139, 142, 145, 481, 791, 936, 939, 980, 1236
GlaI GCGC 3 cut(s) 103, 166, 599
GluI GCNGC 9 cut(s) 139, 142, 145, 481, 791, 936, 939, 980, 1236
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 2 cut(s) 25, 898
HapII CCGG 2 cut(s) 219, 583
HgaI GACGC 2 cut(s) 196, 1250
HhaI GCGC 3 cut(s) 104, 167, 600
Hin1I GRCGYC 1 cut(s) 1261
Hin1II CATG 6 cut(s) 396, 529, 559, 739, 914, 1096
Hin6I GCGC 3 cut(s) 102, 165, 598
HinP1I GCGC 3 cut(s) 102, 165, 598
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HinfI GANTC 8 cut(s) 60, 230, 242, 276, 486, 754, 784, 1182
HpaII CCGG 2 cut(s) 219, 583
HphI GGTGA 3 cut(s) 70, 208, 281
Hpy166II GTNNAC 7 cut(s) 414, 679, 725, 742, 753, 808, 1063
Hpy188I TCNGA 6 cut(s) 30, 59, 1002, 1012, 1035, 1211
Hpy188III TCNNGA 2 cut(s) 255, 828
Hpy8I GTNNAC 7 cut(s) 414, 679, 725, 742, 753, 808, 1063
Hpy99I CGWCG 4 cut(s) 110, 137, 212, 266
HpyAV CCTTC 3 cut(s) 460, 898, 1051
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 341, 1071
HpyF10VI GCNNNNNNNGC 9 cut(s) 144, 173, 257, 549, 731, 799, 866, 935, 1241
HpyF3I CTNAG 6 cut(s) 56, 645, 756, 798, 888, 975
HpySE526I ACGT 2 cut(s) 341, 1071
Hsp92I GRCGYC 1 cut(s) 1261
Hsp92II CATG 6 cut(s) 396, 529, 559, 739, 914, 1096
HspAI GCGC 3 cut(s) 102, 165, 598
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 5 cut(s) 30, 265, 327, 360, 862
LmnI GCTCC 4 cut(s) 549, 557, 1169, 1241
Lsp1109I GCAGC 6 cut(s) 467, 802, 925, 947, 966, 1222
LweI GCATC 1 cut(s) 946
MaeII ACGT 2 cut(s) 341, 1071
MaeIII GTNAC 1 cut(s) 443
MalI GATC 5 cut(s) 32, 267, 329, 362, 864
MboI GATC 5 cut(s) 30, 265, 327, 360, 862
MboII GAAGA 5 cut(s) 7, 106, 205, 738, 793
MfeI CAATTG 4 cut(s) 462, 652, 1047, 1251
MhlI GDGCHC 4 cut(s) 159, 380, 554, 727
MlyI GAGTC 5 cut(s) 224, 236, 285, 495, 748
MmeI TCCRAC 2 cut(s) 943, 980
MroXI GAANNNNTTC 1 cut(s) 1186
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 1086
MspA1I CMGCKG 3 cut(s) 547, 860, 938
MspI CCGG 2 cut(s) 219, 583
MspR9I CCNGG 3 cut(s) 182, 374, 583
MunI CAATTG 4 cut(s) 462, 652, 1047, 1251
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 2 cut(s) 182, 374
MvnI CGCG 2 cut(s) 102, 600
MwoI GCNNNNNNNGC 9 cut(s) 144, 173, 257, 549, 731, 799, 866, 935, 1241
NciI CCSGG 1 cut(s) 583
NcoI CCATGG 1 cut(s) 735
NdeII GATC 5 cut(s) 30, 265, 327, 360, 862
NlaIII CATG 6 cut(s) 396, 529, 559, 739, 914, 1096
NlaIV GGNNCC 2 cut(s) 1171, 1243
NmeAIII GCCGAG 1 cut(s) 1134
NspI RCATGY 1 cut(s) 529
PctI GAATGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 1186
PfeI GAWTC 3 cut(s) 60, 784, 1182
PflFI GACNNNGTC 2 cut(s) 206, 757
PflMI CCANNNNNTGG 1 cut(s) 1256
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 9 cut(s) 140, 143, 146, 482, 792, 937, 940, 981, 1237
Ple19I CGATCG 1 cut(s) 268
PleI GAGTC 5 cut(s) 224, 236, 284, 494, 748
PpsI GAGTC 5 cut(s) 224, 236, 284, 494, 748
Ppu21I YACGTR 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 180, 372
PspGI CCWGG 2 cut(s) 180, 372
PspN4I GGNNCC 2 cut(s) 1171, 1243
PstI CTGCAG 3 cut(s) 485, 984, 1240
PstNI CAGNNNCTG 2 cut(s) 373, 775
PsyI GACNNNGTC 2 cut(s) 206, 757
PvuI CGATCG 1 cut(s) 268
PvuII CAGCTG 2 cut(s) 860, 938
RsaI GTAC 6 cut(s) 314, 344, 560, 608, 680, 1097
RsaNI GTAC 6 cut(s) 313, 343, 559, 607, 679, 1096
RseI CAYNNNNRTG 1 cut(s) 1086
SacI GAGCTC 1 cut(s) 554
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 9 cut(s) 139, 142, 145, 481, 791, 936, 939, 980, 1236
Sau3AI GATC 5 cut(s) 30, 265, 327, 360, 862
SchI GAGTC 5 cut(s) 224, 236, 285, 495, 748
ScrFI CCNGG 3 cut(s) 182, 374, 583
SduI GDGCHC 4 cut(s) 159, 380, 554, 727
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 3 cut(s) 481, 980, 1236
SgrAI CRCCGGYG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 1086
SstI GAGCTC 1 cut(s) 554
StyD4I CCNGG 3 cut(s) 180, 372, 581
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 2 cut(s) 344, 1074
TaqI TCGA 3 cut(s) 264, 330, 432
TatI WGTACW 4 cut(s) 312, 558, 678, 1095
TauI GCSGC 3 cut(s) 141, 144, 147
TfiI GAWTC 3 cut(s) 60, 784, 1182
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 4 cut(s) 40, 408, 445, 671
TseI GCWGC 6 cut(s) 480, 790, 935, 938, 979, 1235
TspDTI ATGAA 3 cut(s) 565, 1070, 1215
TspRI CASTG 4 cut(s) 40, 408, 445, 671
Tth111I GACNNNGTC 2 cut(s) 206, 757
Van91I CCANNNNNTGG 1 cut(s) 1256
VneI GTGCAC 1 cut(s) 723
XapI RAATTY 2 cut(s) 72, 1076
XceI RCATGY 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 807
XmnI GAANNNNTTC 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.