Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009529

Physical Location & Seq

Genomic Coordinates Forward (+)

47394939 .. 47403031

Gene Structure 8093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0357600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCAACCACCAGCACCCCCACCACGGATATTACTTTGAAGCTCTTGATTGATAGAAAGGGCCACAAAGTTCTGTATGCTGAATCGGGCAAGGAATTTGTGGATTTCCTTTTCACCATTATGTCATTACCCGTTGGCACTGTCATTAGGCTCCTCAGCAAGGATAGCATGGTTGGTAGCTTAGGCAAACTTTATCATAGTATTGAAAGCATTGGTGACATTTACATGCTACCAGATTGTAACAGAGATACCTTGCTCAAACCCACAGCGGTAATAGGCAGTGGGGATGCCTCTCTTTTGTTAACTAATGATGAGTCAGTGGCGAATAGAAAGGCTTACATGTGTGTGAACAGCCACCGGTATGTGGCTGATGACCCTAGAGCCATATGTCCAAAGTGCAAAAATTATATCTCCACCGAAGTGCCTTATGTTGCTCCGCAGGCTACTACTGCTGGATCTTCCGGGGGTGGTCGTGGATATGTGAAAGATATTGTGACATACATGATTATGGATAATTTGGAGGTGAATCCCCTGTCTACCACAGCTTGTCTAACTATGCTTAACAAGTTCAATGTTAAGGAGGTTGATTCCCTTGAAGAGAAGGTGGTTCATCTAGGCATGGATGAGGGTTTGAAACTGTTGAAGGCATCATTGGAGTCAAATTCTGTTCTCACAAATGTTTTCCTTGGGAAGAAAGAAGCATATAACATTTCAATGCCCTGCAAGCGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0001101 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0033577 GO:0033993 GO:0034645 GO:0036211 GO:0042175 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG11_N Glycos_transf_1

Protein Analysis

244

Amino Acids

26.74

Weight (kDa)

6.89

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	9 - 238	3.4e-42	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56010
fragaria_vesca	FvH4_7g24710 FvH4_7g24710
malus_domestica	MD01G1154900.v1.1 MD07G1224000.v1.1
prunus_persica	Prupe.2G252500_v2.0.a1
pyrus_communis	pycom01g17230 pycom07g20260
rosa_chinensis	RchiOBHm_Chr1g0370551
rosa_laevigata	RLG00000027027
rosa_multiflora	Rmu_sc0002021.1_g000017 Rmu_sc0021895.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286430
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG366900 Rh1BG329400 Rh1BG330400 Rh1CG344700 Rh1DG359700 Rh1DG360400 Rh1DG361900
rosa_wichuraiana	Rw1G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	536
AciI	CCGC	2 cut(s)	269, 437
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	2 cut(s)	95, 661
AfiI	CCNNNNNNNGG	3 cut(s)	25, 160, 364
AflIII	ACRYGT	1 cut(s)	339
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	7 cut(s)	40, 206, 571, 596, 634, 643, 714
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	3 cut(s)	43, 180, 545
AluI	AGCT	3 cut(s)	43, 180, 545
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	95, 661
AsiGI	ACCGGT	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	3 cut(s)	106, 227, 535
BbvCI	CCTCAGC	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	463
BfaI	CTAG	2 cut(s)	378, 614
Bme1390I	CCNGG	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	2 cut(s)	277, 656
Bpu10I	CCTNAGC	2 cut(s)	155, 181
BpuMI	CCSGG	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	24, 462, 685
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 160, 364
Bse118I	RCCGGY	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	24, 462, 685
BseGI	GGATG	2 cut(s)	292, 628
BseLI	CCNNNNNNNGG	3 cut(s)	25, 160, 364
BseMII	CTCAG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	63
BshTI	ACCGGT	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	358, 462
BslI	CCNNNNNNNGG	3 cut(s)	25, 160, 364
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	455
BspACI	CCGC	2 cut(s)	269, 437
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	3 cut(s)	24, 462, 685
BssMI	GATC	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	685
Bst4CI	ACNGT	2 cut(s)	142, 639
Bst6I	CTCTTC	1 cut(s)	591
BstC8I	GCNNGC	2 cut(s)	441, 725
BstDEI	CTNAG	2 cut(s)	155, 181
BstDSI	CCRYGG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	292, 628
BstKTI	GATC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	455
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 440, 449, 724
BstNSI	RCATGY	2 cut(s)	229, 343
BstSCI	CCNGG	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	292, 628
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	3 cut(s)	138, 286, 324
Cac8I	GCNNGC	2 cut(s)	441, 725
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	5 cut(s)	169, 226, 340, 502, 619
DdeI	CTNAG	2 cut(s)	155, 181
DpnI	GATC	1 cut(s)	457
DpnII	GATC	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	685
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	5 cut(s)	172, 229, 343, 505, 622
FatI	CATG	5 cut(s)	168, 225, 339, 501, 618
FauNDI	CATATG	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	536
FokI	GGATG	2 cut(s)	299, 635
FspBI	CTAG	2 cut(s)	378, 614
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	358, 462
Hin1II	CATG	5 cut(s)	172, 229, 343, 505, 622
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	5 cut(s)	83, 314, 526, 587, 656
HpaI	GTTAAC	1 cut(s)	303
HpaII	CCGG	2 cut(s)	358, 462
HphI	GGTGA	3 cut(s)	106, 227, 535
Hpy166II	GTNNAC	3 cut(s)	303, 349, 537
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	3 cut(s)	303, 349, 537
HpyAV	CCTTC	2 cut(s)	595, 637
HpyCH4III	ACNGT	2 cut(s)	142, 639
HpyCH4V	TGCA	2 cut(s)	399, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 440, 449, 724
HpyF3I	CTNAG	2 cut(s)	155, 181
Hsp92II	CATG	5 cut(s)	172, 229, 343, 505, 622
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	455
LmnI	GCTCC	2 cut(s)	156, 439
LpnPI	CCDG	7 cut(s)	25, 246, 371, 425, 438, 475, 545
LweI	GCATC	2 cut(s)	277, 656
MaeI	CTAG	2 cut(s)	378, 614
MaeIII	GTNAC	3 cut(s)	215, 239, 493
MalI	GATC	1 cut(s)	457
MboI	GATC	1 cut(s)	455
MboII	GAAGA	3 cut(s)	450, 608, 703
MflI	RGATCY	1 cut(s)	455
MluCI	AATT	4 cut(s)	95, 403, 514, 661
MlyI	GAGTC	2 cut(s)	323, 665
MnlI	CCTC	5 cut(s)	164, 301, 514, 574, 619
MseI	TTAA	3 cut(s)	302, 561, 576
MslI	CAYNNNNRTG	7 cut(s)	119, 224, 344, 360, 419, 506, 713
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	358, 462
MspR9I	CCNGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	4 cut(s)	165, 440, 449, 724
NciI	CCSGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	1 cut(s)	455
NlaIII	CATG	5 cut(s)	172, 229, 343, 505, 622
NlaIV	GGNNCC	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	215, 493
NspI	RCATGY	2 cut(s)	229, 343
OliI	CACNNNNGTG	1 cut(s)	419
PciI	ACATGT	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	83, 526, 587
PinAI	ACCGGT	1 cut(s)	357
PleI	GAGTC	2 cut(s)	322, 664
PpsI	GAGTC	2 cut(s)	322, 664
PscI	ACATGT	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	455
RseI	CAYNNNNRTG	7 cut(s)	119, 224, 344, 360, 419, 506, 713
SaqAI	TTAA	3 cut(s)	302, 561, 576
Sau3AI	GATC	1 cut(s)	455
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	323, 665
ScrFI	CCNGG	1 cut(s)	463
SetI	ASST	7 cut(s)	45, 182, 254, 525, 547, 585, 606
SfaNI	GCATC	2 cut(s)	277, 656
SmiMI	CAYNNNNRTG	7 cut(s)	119, 224, 344, 360, 419, 506, 713
Sse9I	AATT	4 cut(s)	95, 403, 514, 661
SsiI	CCGC	2 cut(s)	269, 437
SspMI	CTAG	2 cut(s)	378, 614
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	2 cut(s)	142, 639
TasI	AATT	4 cut(s)	95, 403, 514, 661
TfiI	GAWTC	3 cut(s)	83, 526, 587
Tru1I	TTAA	3 cut(s)	302, 561, 576
Tru9I	TTAA	3 cut(s)	302, 561, 576
TscAI	CASTG	3 cut(s)	145, 286, 324
TseFI	GTSAC	2 cut(s)	215, 493
Tsp45I	GTSAC	2 cut(s)	215, 493
TspDTI	ATGAA	1 cut(s)	599
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	3 cut(s)	145, 286, 324
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	95, 661
XceI	RCATGY	2 cut(s)	229, 343
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	2 cut(s)	378, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.