Rh1DG359700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009529
Physical Location & Seq
Forward (+)
58423197 .. 58465115
41919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG359700.1

Sequence Viewer

Length: 1323 bp
ATGGAAATCCGAGCGGATCATGCGCTTGGGGAACGAATAAACTATCATCAAACATGGCGGCAACCATGCTACATAGCCAAAACAGCAGAAGATCTACTCCTCATATCGAGTTTATTCAGAAAAATCTGTGTTTTTAAGCTGGATTACAATTCTGATGGTAGCTACAGATGGATAGAGACAGAGTCCATTGGCAAGGGTGAATTGTATTTGAATAGGGACCAGTCACTACTAACCTCAACAGCCGATGATGCTTCAGAATGCAATAGGAACTCAATTTACTTCACAGACTTGTTGAATTCCGGCAAAGGTGCCTTTGGTTTATTTGCGTATAGTTTAAGAAAGAAAAAAGAAGAAAAGGTCCAAGACTTGTTACAAGCCAAGTACCAGAAGGTGTCAAGATTTTCTGCTGGAGCTTCTACACCAACAGTCACACAATTCACATCTTCATTTGGAACATTTCGGTCAAGAAGGCATATAAACCGAAAAAGATGGGGTTTATGTCTTTCCGTTGCAGATAGCAATCAGCTTACCACAGAAACTGGTGATAAGGCTTCTGAAACTACTTCAACTTCTCCTTCTGAGGATCCATTACCATCTGTGAGTTCTTCATCTTTGGGTATTTCTGCCAATGATAGTCAGTTCCAAACTAGTGCCATTGACGAGCCTAGTTCTCAAACCTCTGAGGCTTCCAATGGATCATCAGTTAATTCAAGTCAGAAACAGGAGGAAGCATCACCTCCACCAAACTCGCAATCTAAATCAAAAAGATCACCACTAACAGCCAGGGAGAGACTGAGGGCAGCCAAGGTTCTCAGCCGTTATAACACGGAGTCAAAGCCAGCTAGAAAGAAATCAGATAGGAGCAAGACTGTACTAGACGCTGCTAGAGCGAGCGACGGTGGGAAAAGAAGATCTGGACTTCCACAGGCCCCTACAAACATTTTCGACGACAGCAAACGAGGAATGCCAAAGGATGGCCTAACTTGGGATTTTCCAGGGGGGAAGCCATCTTTTACAAAGAAACAAGCAGATCTTTTCTTTCCTCCAGATTTCGCAGATGATTTCCCAGTTGCCATGCAGTACAGTAACAAGTCCTATACACCAGCATTTATCAATAAGGGCCTCATATCTAAAGCTTACACTCCTAAACTCAGAGAAGCTGTTAAGCGTTTGCAAGCAGAGAAAAAGGAAGCCAAAATTGAGGATGAGCCACAAAAGGAGAAGTTTGAAGTTCACCAGGAGAAAATGACGATTAGGAAAAGGAATTGGTGTAAAATATGGGTTTGTAGATCATATATGAATTCTAATATGTACCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

49.55

Weight (kDa)

9.47

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 19 - 103 1.1e-07 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 974
AccBSI CCGCTC 1 cut(s) 14
AciI CCGC 2 cut(s) 14, 58
AclWI GGATC 4 cut(s) 24, 578, 591, 703
AcsI RAATTY 2 cut(s) 295, 1300
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 4 cut(s) 383, 873, 1082, 1313
AfiI CCNNNNNNNGG 2 cut(s) 974, 985
AgsI TTSAA 5 cut(s) 211, 295, 567, 711, 1229
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 3 cut(s) 782, 994, 1236
AluBI AGCT 7 cut(s) 139, 162, 413, 526, 842, 1136, 1160
AluI AGCT 7 cut(s) 139, 162, 413, 526, 842, 1136, 1160
Alw26I GTCTC 2 cut(s) 170, 784
AlwI GGATC 4 cut(s) 24, 578, 591, 703
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 3 cut(s) 927, 976, 1120
ApeKI GCWGC 2 cut(s) 800, 881
ApoI RAATTY 2 cut(s) 295, 1300
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 4 cut(s) 217, 358, 928, 1120
AsuHPI GGTGA 5 cut(s) 209, 554, 726, 762, 1226
AvaII GGWCC 2 cut(s) 217, 358
BamHI GGATCC 1 cut(s) 583
BanI GGYRCC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 812, 868
BccI CCATC 6 cut(s) 149, 162, 483, 601, 968, 1015
BceAI ACGGC 1 cut(s) 801
BciT130I CCWGG 3 cut(s) 784, 996, 1238
BcoDI GTCTC 2 cut(s) 170, 784
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 5 cut(s) 648, 666, 843, 875, 885
BfmI CTRYAG 1 cut(s) 163
BglII AGATCT 3 cut(s) 91, 911, 1030
BisI GCNGC 3 cut(s) 59, 801, 882
BlsI GCNGC 3 cut(s) 60, 802, 883
Bme1390I CCNGG 3 cut(s) 784, 996, 1238
Bme18I GGWCC 2 cut(s) 217, 358
BmgT120I GGNCC 4 cut(s) 217, 358, 928, 1120
BmiI GGNNCC 4 cut(s) 218, 310, 585, 930
BmrFI CCNGG 3 cut(s) 784, 996, 1238
BmrI ACTGGG 1 cut(s) 1061
BmsI GCATC 2 cut(s) 238, 740
BmuI ACTGGG 1 cut(s) 1061
BpmI CTGGAG 2 cut(s) 429, 1029
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 783, 804, 995
Bsc4I CCNNNNNNNGG 2 cut(s) 974, 985
Bse1I ACTGG 3 cut(s) 220, 544, 1067
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 3 cut(s) 784, 996, 1238
BseDI CCNNGG 3 cut(s) 783, 804, 995
BseGI GGATG 2 cut(s) 979, 1210
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 974, 985
BseMII CTCAG 5 cut(s) 570, 672, 785, 826, 1165
BseNI ACTGG 3 cut(s) 220, 544, 1067
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 812, 868
BshFI GGCC 3 cut(s) 929, 978, 1122
BshNI GGYRCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 974, 985
BsmAI GTCTC 2 cut(s) 170, 784
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 2 cut(s) 263, 969
BsnI GGCC 3 cut(s) 929, 978, 1122
Bsp143I GATC 8 cut(s) 16, 91, 583, 695, 767, 911, 1030, 1289
BspACI CCGC 2 cut(s) 14, 58
BspANI GGCC 3 cut(s) 929, 978, 1122
BspCNI CTCAG 5 cut(s) 571, 673, 786, 825, 1164
BspLI GGNNCC 4 cut(s) 218, 310, 585, 930
BspPI GGATC 4 cut(s) 24, 578, 591, 703
BspT107I GGYRCC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 14
BsrI ACTGG 3 cut(s) 220, 544, 1067
BssECI CCNNGG 3 cut(s) 783, 804, 995
BssMI GATC 8 cut(s) 16, 91, 583, 695, 767, 911, 1030, 1289
BssT1I CCWWGG 1 cut(s) 804
Bst2UI CCWGG 3 cut(s) 784, 996, 1238
Bst4CI ACNGT 4 cut(s) 427, 871, 899, 1085
BstC8I GCNNGC 3 cut(s) 840, 892, 1176
BstDEI CTNAG 5 cut(s) 579, 681, 794, 812, 1151
BstF5I GGATG 2 cut(s) 979, 1210
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 8 cut(s) 19, 94, 586, 698, 770, 914, 1033, 1292
BstMAI GTCTC 2 cut(s) 170, 784
BstMBI GATC 8 cut(s) 16, 91, 583, 695, 767, 911, 1030, 1289
BstMWI GCNNNNNNNGC 4 cut(s) 20, 83, 248, 887
BstNI CCWGG 3 cut(s) 784, 996, 1238
BstSCI CCNGG 3 cut(s) 782, 994, 1236
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 812, 868
BstX2I RGATCY 4 cut(s) 91, 583, 911, 1030
BstYI RGATCY 4 cut(s) 91, 583, 911, 1030
BsuRI GGCC 3 cut(s) 929, 978, 1122
BtsCI GGATG 2 cut(s) 979, 1210
Cac8I GCNNGC 3 cut(s) 840, 892, 1176
CaiI CAGNNNCTG 1 cut(s) 539
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 4 cut(s) 217, 358, 928, 1120
CseI GACGC 1 cut(s) 887
Csp6I GTAC 4 cut(s) 382, 872, 1081, 1312
CviAII CATG 4 cut(s) 20, 54, 66, 1075
CviQI GTAC 4 cut(s) 382, 872, 1081, 1312
DdeI CTNAG 5 cut(s) 579, 681, 794, 812, 1151
DpnI GATC 8 cut(s) 18, 93, 585, 697, 769, 913, 1032, 1291
DpnII GATC 8 cut(s) 16, 91, 583, 695, 767, 911, 1030, 1289
Eco130I CCWWGG 1 cut(s) 804
Eco47I GGWCC 2 cut(s) 217, 358
Eco57I CTGAAG 1 cut(s) 237
EcoO109I RGGNCCY 2 cut(s) 928, 1120
EcoRI GAATTC 2 cut(s) 295, 1300
EcoRII CCWGG 3 cut(s) 782, 994, 1236
EcoT14I CCWWGG 1 cut(s) 804
ErhI CCWWGG 1 cut(s) 804
FaeI CATG 4 cut(s) 23, 57, 69, 1078
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FaqI GGGAC 1 cut(s) 230
FatI CATG 4 cut(s) 19, 53, 65, 1074
Fnu4HI GCNGC 3 cut(s) 59, 801, 882
FokI GGATG 2 cut(s) 986, 1217
Fsp4HI GCNGC 3 cut(s) 59, 801, 882
FspBI CTAG 5 cut(s) 648, 666, 843, 875, 885
GlaI GCGC 1 cut(s) 24
GluI GCNGC 3 cut(s) 59, 801, 882
GsuI CTGGAG 2 cut(s) 429, 1029
HaeIII GGCC 3 cut(s) 929, 978, 1122
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 887
HhaI GCGC 1 cut(s) 25
Hin1II CATG 4 cut(s) 23, 57, 69, 1078
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 1134
HinfI GANTC 2 cut(s) 182, 830
HpaII CCGG 1 cut(s) 300
HphI GGTGA 5 cut(s) 209, 554, 726, 762, 1226
Hpy166II GTNNAC 1 cut(s) 1234
Hpy188III TCNNGA 4 cut(s) 396, 465, 915, 1046
Hpy8I GTNNAC 1 cut(s) 1234
Hpy99I CGWCG 2 cut(s) 899, 950
HpyAV CCTTC 3 cut(s) 382, 462, 585
HpyCH4III ACNGT 4 cut(s) 427, 871, 899, 1085
HpyCH4V TGCA 4 cut(s) 261, 512, 1078, 1174
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 83, 248, 887
HpyF3I CTNAG 5 cut(s) 579, 681, 794, 812, 1151
Hsp92II CATG 4 cut(s) 23, 57, 69, 1078
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 8 cut(s) 16, 91, 583, 695, 767, 911, 1030, 1289
LmnI GCTCC 2 cut(s) 410, 861
Lsp1109I GCAGC 2 cut(s) 812, 868
LweI GCATC 2 cut(s) 238, 740
MaeI CTAG 5 cut(s) 648, 666, 843, 875, 885
MaeIII GTNAC 4 cut(s) 222, 369, 427, 1085
MalI GATC 8 cut(s) 18, 93, 585, 697, 769, 913, 1032, 1291
MbiI CCGCTC 1 cut(s) 14
MboI GATC 8 cut(s) 16, 91, 583, 695, 767, 911, 1030, 1289
MboII GAAGA 5 cut(s) 101, 362, 435, 597, 921
MflI RGATCY 4 cut(s) 91, 583, 911, 1030
MluCI AATT 9 cut(s) 148, 200, 273, 295, 434, 706, 1197, 1264, 1300
MlyI GAGTC 2 cut(s) 191, 839
MseI TTAA 4 cut(s) 135, 335, 705, 1164
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 3 cut(s) 784, 996, 1238
Mva1269I GAATGC 2 cut(s) 263, 969
MvaI CCWGG 3 cut(s) 784, 996, 1238
MwoI GCNNNNNNNGC 4 cut(s) 20, 83, 248, 887
NdeII GATC 8 cut(s) 16, 91, 583, 695, 767, 911, 1030, 1289
NlaIII CATG 4 cut(s) 23, 57, 69, 1078
NlaIV GGNNCC 4 cut(s) 218, 310, 585, 930
NmuCI GTSAC 2 cut(s) 222, 427
PctI GAATGC 2 cut(s) 263, 969
PflFI GACNNNGTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 974
PkrI GCNGC 3 cut(s) 60, 802, 883
PleI GAGTC 2 cut(s) 190, 838
PpsI GAGTC 2 cut(s) 190, 838
PsiI TTATAA 1 cut(s) 822
Psp6I CCWGG 3 cut(s) 782, 994, 1236
PspGI CCWGG 3 cut(s) 782, 994, 1236
PspN4I GGNNCC 4 cut(s) 218, 310, 585, 930
PspPI GGNCC 4 cut(s) 217, 358, 928, 1120
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PstNI CAGNNNCTG 1 cut(s) 539
PsuI RGATCY 4 cut(s) 91, 583, 911, 1030
PsyI GACNNNGTC 1 cut(s) 181
RsaI GTAC 4 cut(s) 383, 873, 1082, 1313
RsaNI GTAC 4 cut(s) 382, 872, 1081, 1312
SaqAI TTAA 4 cut(s) 135, 335, 705, 1164
SatI GCNGC 3 cut(s) 59, 801, 882
Sau3AI GATC 8 cut(s) 16, 91, 583, 695, 767, 911, 1030, 1289
Sau96I GGNCC 4 cut(s) 217, 358, 928, 1120
SchI GAGTC 2 cut(s) 191, 839
ScrFI CCNGG 3 cut(s) 784, 996, 1238
SfaNI GCATC 2 cut(s) 238, 740
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 2 cut(s) 217, 358
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 9 cut(s) 148, 200, 273, 295, 434, 706, 1197, 1264, 1300
SsiI CCGC 2 cut(s) 14, 58
SspI AATATT 1 cut(s) 1319
SspMI CTAG 5 cut(s) 648, 666, 843, 875, 885
StyD4I CCNGG 3 cut(s) 782, 994, 1236
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 4 cut(s) 427, 871, 899, 1085
TaqI TCGA 2 cut(s) 107, 945
TaqII GACCGA 1 cut(s) 450
TasI AATT 9 cut(s) 148, 200, 273, 295, 434, 706, 1197, 1264, 1300
TatI WGTACW 2 cut(s) 871, 1080
TauI GCSGC 1 cut(s) 61
Tru1I TTAA 4 cut(s) 135, 335, 705, 1164
Tru9I TTAA 4 cut(s) 135, 335, 705, 1164
TseFI GTSAC 2 cut(s) 222, 427
TseI GCWGC 2 cut(s) 800, 881
Tsp45I GTSAC 2 cut(s) 222, 427
TspDTI ATGAA 3 cut(s) 435, 597, 1313
TspGWI ACGGA 2 cut(s) 496, 842
Tth111I GACNNNGTC 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 974
VpaK11BI GGWCC 2 cut(s) 217, 358
XapI RAATTY 2 cut(s) 295, 1300
XspI CTAG 5 cut(s) 648, 666, 843, 875, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.